RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 NFKBIBQ15653 356 aa9.22□□□□□ -0.93
SYNE1-228ENST00000490135 ZHX1Q9UKY1 873 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-228ENST00000490135 FTSJ3Q8IY81 847 aaKnown RBP9.22□□□□□ -0.93
SYNE1-228ENST00000490135 PLCD3Q8N3E9 789 aa9.22□□□□□ -0.93
SYNE1-228ENST00000490135 CFAP53Q96M91 514 aa9.22□□□□□ -0.93
SYNE1-228ENST00000490135 IRX3P78415 501 aaPredicted RBP9.21□□□□□ -0.93
SYNE1-228ENST00000490135 DRC7Q8IY82 874 aa9.21□□□□□ -0.93
SYNE1-228ENST00000490135 CALD1Q05682 793 aaKnown RBP9.2□□□□□ -0.94
SYNE1-228ENST00000490135 EEA1Q15075 1411 aa9.2□□□□□ -0.94
SYNE1-228ENST00000490135 EIF4G2P78344 907 aaKnown RBP eCLIP9.2□□□□□ -0.94
SYNE1-228ENST00000490135 HSP90AB1P08238 724 aaKnown RBP9.2□□□□□ -0.94
SYNE1-228ENST00000490135 AEBP1Q8IUX7 1158 aa9.2□□□□□ -0.94
SYNE1-228ENST00000490135 PRDM10Q9NQV6 1147 aa9.19□□□□□ -0.94
SYNE1-228ENST00000490135 IPO4Q8TEX9 1081 aaKnown RBP9.18□□□□□ -0.94
SYNE1-228ENST00000490135 KDM2AQ9Y2K7 1162 aa9.18□□□□□ -0.94
SYNE1-228ENST00000490135 GNL2Q13823 731 aaKnown RBP9.18□□□□□ -0.94
SYNE1-228ENST00000490135 DHX37Q8IY37 1157 aaKnown RBP9.18□□□□□ -0.94
SYNE1-228ENST00000490135 KCNH8Q96L42 1107 aa9.18□□□□□ -0.94
SYNE1-228ENST00000490135 SLC4A3P48751 1232 aa9.16□□□□□ -0.94
SYNE1-228ENST00000490135 LMOD2Q6P5Q4 547 aa9.16□□□□□ -0.94
SYNE1-228ENST00000490135 C11orf95C9JLR9 678 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-228ENST00000490135 HIRIP3Q9BW71 556 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-228ENST00000490135 E9PSI1 815 aa9.15□□□□□ -0.94
SYNE1-228ENST00000490135 CALRP27797 417 aaKnown RBP9.15□□□□□ -0.94
SYNE1-228ENST00000490135 GOLGA6L1Q8N7Z2 621 aa9.15□□□□□ -0.94
SYNE1-228ENST00000490135 CHMP4AQ9BY43 222 aa9.15□□□□□ -0.94
SYNE1-228ENST00000490135 SENP3Q9H4L4 574 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-228ENST00000490135 WWC1Q8IX03 1113 aa9.15□□□□□ -0.95
SYNE1-228ENST00000490135 R3HCC1Q9Y3T6 440 aaKnown RBP9.15□□□□□ -0.95
SYNE1-228ENST00000490135 MAPK8IP3Q9UPT6 1336 aa9.15□□□□□ -0.95
SYNE1-228ENST00000490135 CCDC66A2RUB6 948 aa9.14□□□□□ -0.95
SYNE1-228ENST00000490135 TSPY4P0CV99 314 aa9.14□□□□□ -0.95
SYNE1-228ENST00000490135 TSPY10P0CW01 314 aa9.14□□□□□ -0.95
SYNE1-228ENST00000490135 MCCP23508 829 aa9.14□□□□□ -0.95
SYNE1-228ENST00000490135 PDE4AP27815 886 aa9.14□□□□□ -0.95
SYNE1-228ENST00000490135 CEP89Q96ST8 783 aa9.13□□□□□ -0.95
SYNE1-228ENST00000490135 SPRYD3Q8NCJ5 442 aa9.13□□□□□ -0.95
SYNE1-228ENST00000490135 SLKQ9H2G2 1235 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-228ENST00000490135 AEBP2Q6ZN18 517 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-228ENST00000490135 TMX4Q9H1E5 349 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-228ENST00000490135 HSP90B1P14625 803 aaKnown RBP9.12□□□□□ -0.95
SYNE1-228ENST00000490135 CSPP1Q1MSJ5 1256 aa9.12□□□□□ -0.95
SYNE1-228ENST00000490135 KIAA1211Q6ZU35 1233 aa9.12□□□□□ -0.95
SYNE1-228ENST00000490135 NUDCQ9Y266 331 aa9.1□□□□□ -0.95
SYNE1-228ENST00000490135 HSCBQ8IWL3 235 aa9.1□□□□□ -0.95
SYNE1-228ENST00000490135 TPM4P67936 248 aa9.1□□□□□ -0.95
SYNE1-228ENST00000490135 MS4A1P11836 297 aa9.1□□□□□ -0.95
SYNE1-228ENST00000490135 CHIC2Q9UKJ5 165 aa9.1□□□□□ -0.95
SYNE1-228ENST00000490135 VGLL3A8MV65 326 aa9.09□□□□□ -0.95
SYNE1-228ENST00000490135 SETQ01105 290 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-228ENST00000490135 CDCA8Q53HL2 280 aa9.09□□□□□ -0.95
SYNE1-228ENST00000490135 UQCRHLA0A096LP55 91 aa9.08□□□□□ -0.96
SYNE1-228ENST00000490135 UQCRHP07919 91 aa9.08□□□□□ -0.96
SYNE1-228ENST00000490135 PABPN1Q86U42 306 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE1-228ENST00000490135 SMAP1Q8IYB5 467 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-228ENST00000490135 HTATSF1O43719 755 aaKnown RBP9.08□□□□□ -0.96
SYNE1-228ENST00000490135 CCDC34Q96HJ3 373 aa9.08□□□□□ -0.96
SYNE1-228ENST00000490135 CGNQ9P2M7 1197 aaKnown RBP9.08□□□□□ -0.96
SYNE1-228ENST00000490135 FBXO3Q9UK99 471 aa9.08□□□□□ -0.96
SYNE1-228ENST00000490135 MRE11P49959 708 aa9.07□□□□□ -0.96
SYNE1-228ENST00000490135 CC2D1BQ5T0F9 858 aaKnown RBP9.07□□□□□ -0.96
SYNE1-228ENST00000490135 KNSTRNQ9Y448 316 aa9.07□□□□□ -0.96
SYNE1-228ENST00000490135 CFAP44Q96MT7 982 aa9.07□□□□□ -0.96
SYNE1-228ENST00000490135 GBP4Q96PP9 640 aa9.06□□□□□ -0.96
SYNE1-228ENST00000490135 DNAJC2Q99543 621 aaKnown RBP9.06□□□□□ -0.96
SYNE1-228ENST00000490135 DDX11L8A8MPP1 907 aa9.06□□□□□ -0.96
SYNE1-228ENST00000490135 WASHC2AQ641Q2 1341 aa9.06□□□□□ -0.96
SYNE1-228ENST00000490135 FRAT2O75474 233 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-228ENST00000490135 NEUROD2Q15784 382 aa9.06□□□□□ -0.96
SYNE1-228ENST00000490135 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
SYNE1-228ENST00000490135 TSPYL1Q9H0U9 437 aa9.05□□□□□ -0.96
SYNE1-228ENST00000490135 WASHC2CQ9Y4E1 1318 aa9.05□□□□□ -0.96
SYNE1-228ENST00000490135 RASSF8Q8NHQ8 419 aa9.04□□□□□ -0.96
SYNE1-228ENST00000490135 LETM1O95202 739 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-228ENST00000490135 TPM3P06753 285 aa9.04□□□□□ -0.96
SYNE1-228ENST00000490135 AXDND1Q5T1B0 1012 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-228ENST00000490135 NOM1Q5C9Z4 860 aaKnown RBP9.03□□□□□ -0.96
SYNE1-228ENST00000490135 ESPNB1AK53 854 aa9.03□□□□□ -0.96
SYNE1-228ENST00000490135 POGKQ9P215 609 aa9.03□□□□□ -0.96
SYNE1-228ENST00000490135 CBX1P83916 185 aa9.02□□□□□ -0.96
SYNE1-228ENST00000490135 CLGNO14967 610 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 CLCN1P35523 988 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 PPP4R3BQ5MIZ7 849 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 CNKSR2Q8WXI2 1034 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 ABCC9O60706 1549 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 G3V3G9 751 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 DCAF8Q5TAQ9 597 aa9.02□□□□□ -0.97
SYNE1-228ENST00000490135 GTPBP4Q9BZE4 634 aaKnown RBP9.01□□□□□ -0.97
SYNE1-228ENST00000490135 SENP3-EIF4A1A0A087X0R7 540 aa9.01□□□□□ -0.97
SYNE1-228ENST00000490135 VPS53Q5VIR6 699 aa9□□□□□ -0.97
SYNE1-228ENST00000490135 SYAP1Q96A49 352 aaPredicted RBP9□□□□□ -0.97
SYNE1-228ENST00000490135 FAM193AP78312 1265 aa9□□□□□ -0.97
SYNE1-228ENST00000490135 CREBRFQ8IUR6 639 aa9□□□□□ -0.97
SYNE1-228ENST00000490135 MARCH6O60337 910 aa9□□□□□ -0.97
SYNE1-228ENST00000490135 RRP12Q5JTH9 1297 aaKnown RBP9□□□□□ -0.97
SYNE1-228ENST00000490135 ZFP91Q96JP5 570 aaPredicted RBP9□□□□□ -0.97
SYNE1-228ENST00000490135 BCCIPQ9P287 314 aaKnown RBP eCLIP8.99□□□□□ -0.97
SYNE1-228ENST00000490135 U2SURPO15042 1029 aaKnown RBP8.99□□□□□ -0.97
SYNE1-228ENST00000490135 CCDC173Q0VFZ6 552 aa8.99□□□□□ -0.97
SYNE1-228ENST00000490135 SKOR2Q2VWA4 1001 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms