RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.68■□□□□ 0.42
TRIM40-208ENST00000489892 PHLDB1Q86UU1 1377 aa17.67■□□□□ 0.42
TRIM40-208ENST00000489892 MIA2Q96PC5 1412 aa17.66■□□□□ 0.42
TRIM40-208ENST00000489892 MAP3K4Q9Y6R4 1608 aa17.66■□□□□ 0.42
TRIM40-208ENST00000489892 TEX14Q8IWB6 1497 aa17.66■□□□□ 0.42
TRIM40-208ENST00000489892 FGD6Q6ZV73 1430 aa17.65■□□□□ 0.42
TRIM40-208ENST00000489892 ITSN2Q9NZM3 1697 aa17.64■□□□□ 0.42
TRIM40-208ENST00000489892 WDR7Q9Y4E6 1490 aa17.6■□□□□ 0.41
TRIM40-208ENST00000489892 TCOF1Q13428 1488 aaKnown RBP17.56■□□□□ 0.4
TRIM40-208ENST00000489892 PTPN23Q9H3S7 1636 aa17.56■□□□□ 0.4
TRIM40-208ENST00000489892 FAM50AQ14320 339 aaKnown RBP17.55■□□□□ 0.4
TRIM40-208ENST00000489892 COL17A1Q9UMD9 1497 aaPredicted RBP17.55■□□□□ 0.4
TRIM40-208ENST00000489892 GPATCH8Q9UKJ3 1502 aaKnown RBP17.54■□□□□ 0.4
TRIM40-208ENST00000489892 ZEB1P37275 1124 aaPredicted RBP17.54■□□□□ 0.4
TRIM40-208ENST00000489892 CFDP1Q9UEE9 299 aaPredicted RBP17.53■□□□□ 0.4
TRIM40-208ENST00000489892 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.51■□□□□ 0.39
TRIM40-208ENST00000489892 ARAP3Q8WWN8 1544 aa17.51■□□□□ 0.39
TRIM40-208ENST00000489892 PREX2Q70Z35 1606 aa17.5■□□□□ 0.39
TRIM40-208ENST00000489892 CDC42BPAQ5VT25 1732 aa17.5■□□□□ 0.39
TRIM40-208ENST00000489892 MYO5CQ9NQX4 1742 aa17.5■□□□□ 0.39
TRIM40-208ENST00000489892 CD109Q6YHK3 1445 aa17.49■□□□□ 0.39
TRIM40-208ENST00000489892 KCNH8Q96L42 1107 aa17.49■□□□□ 0.39
TRIM40-208ENST00000489892 PLEKHH2Q8IVE3 1493 aa17.49■□□□□ 0.39
TRIM40-208ENST00000489892 ABCA9Q8IUA7 1624 aa17.47■□□□□ 0.39
TRIM40-208ENST00000489892 TTC37Q6PGP7 1564 aa17.47■□□□□ 0.39
TRIM40-208ENST00000489892 CAMSAP2Q08AD1 1489 aa17.46■□□□□ 0.39
TRIM40-208ENST00000489892 PLCH2O75038 1416 aa17.46■□□□□ 0.39
TRIM40-208ENST00000489892 ARHGAP5Q13017 1502 aa17.45■□□□□ 0.38
TRIM40-208ENST00000489892 SPATA31D1Q6ZQQ2 1576 aa17.45■□□□□ 0.38
TRIM40-208ENST00000489892 RSPH4AQ5TD94 716 aa17.44■□□□□ 0.38
TRIM40-208ENST00000489892 DNMT1P26358 1616 aaKnown RBP17.43■□□□□ 0.38
TRIM40-208ENST00000489892 EFCAB2Q5VUJ9 269 aa17.42■□□□□ 0.38
TRIM40-208ENST00000489892 ACIN1Q9UKV3 1341 aaKnown RBP17.42■□□□□ 0.38
TRIM40-208ENST00000489892 AKNAQ7Z591 1439 aa17.41■□□□□ 0.38
TRIM40-208ENST00000489892 ITGAEP38570 1179 aa17.41■□□□□ 0.38
TRIM40-208ENST00000489892 CDC42BPBQ9Y5S2 1711 aa17.41■□□□□ 0.38
TRIM40-208ENST00000489892 KIAA1107Q9UPP5 1409 aa17.4■□□□□ 0.38
TRIM40-208ENST00000489892 ZNF777Q9ULD5 760 aaPredicted RBP17.4■□□□□ 0.38
TRIM40-208ENST00000489892 ARHGEF5Q12774 1597 aa17.4■□□□□ 0.38
TRIM40-208ENST00000489892 CFAP74Q9C0B2 1584 aa17.4■□□□□ 0.38
TRIM40-208ENST00000489892 DAPK1P53355 1430 aa17.39■□□□□ 0.38
TRIM40-208ENST00000489892 SHANK2Q9UPX8 1470 aa17.38■□□□□ 0.37
TRIM40-208ENST00000489892 ROCK1Q13464 1354 aa17.38■□□□□ 0.37
TRIM40-208ENST00000489892 HFM1A2PYH4 1435 aa17.36■□□□□ 0.37
TRIM40-208ENST00000489892 SAMD9LQ8IVG5 1584 aa17.36■□□□□ 0.37
TRIM40-208ENST00000489892 ABCC5O15440 1437 aa17.35■□□□□ 0.37
TRIM40-208ENST00000489892 SETD5Q9C0A6 1442 aa17.35■□□□□ 0.37
TRIM40-208ENST00000489892 FANCAO15360 1455 aa17.35■□□□□ 0.37
TRIM40-208ENST00000489892 CCDC141Q6ZP82 1450 aa17.35■□□□□ 0.37
TRIM40-208ENST00000489892 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
TRIM40-208ENST00000489892 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
TRIM40-208ENST00000489892 ZNF644Q9H582 1327 aaPredicted RBP17.34■□□□□ 0.37
TRIM40-208ENST00000489892 CROCC2H7BZ55 1655 aa17.33■□□□□ 0.37
TRIM40-208ENST00000489892 CERKQ8TCT0 537 aa17.33■□□□□ 0.36
TRIM40-208ENST00000489892 ABCC1P33527 1531 aa17.32■□□□□ 0.36
TRIM40-208ENST00000489892 ADGBQ8N7X0 1667 aa17.32■□□□□ 0.36
TRIM40-208ENST00000489892 ADGRL2O95490 1459 aa17.31■□□□□ 0.36
TRIM40-208ENST00000489892 ANKRD30AQ9BXX3 1397 aa17.31■□□□□ 0.36
TRIM40-208ENST00000489892 SYCP2Q9BX26 1530 aa17.31■□□□□ 0.36
TRIM40-208ENST00000489892 MBD5Q9P267 1494 aa17.31■□□□□ 0.36
TRIM40-208ENST00000489892 NEO1Q92859 1461 aa17.3■□□□□ 0.36
TRIM40-208ENST00000489892 PTPRKQ15262 1439 aa17.3■□□□□ 0.36
TRIM40-208ENST00000489892 GCC2Q8IWJ2 1684 aa17.29■□□□□ 0.36
TRIM40-208ENST00000489892 C9orf84Q5VXU9 1444 aa17.29■□□□□ 0.36
TRIM40-208ENST00000489892 MAST1Q9Y2H9 1570 aa17.28■□□□□ 0.36
TRIM40-208ENST00000489892 RAB3GAP2Q9H2M9 1393 aa17.27■□□□□ 0.35
TRIM40-208ENST00000489892 NAIPQ13075 1403 aa17.26■□□□□ 0.35
TRIM40-208ENST00000489892 HNRNPMP52272 730 aaKnown RBP eCLIP17.25■□□□□ 0.35
TRIM40-208ENST00000489892 NCOA1Q15788 1441 aa17.24■□□□□ 0.35
TRIM40-208ENST00000489892 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
TRIM40-208ENST00000489892 CHIC2Q9UKJ5 165 aa17.24■□□□□ 0.35
TRIM40-208ENST00000489892 ZNF518AQ6AHZ1 1483 aa17.23■□□□□ 0.35
TRIM40-208ENST00000489892 CLSPNQ9HAW4 1339 aa17.22■□□□□ 0.35
TRIM40-208ENST00000489892 RTEL1-TNFRSF6BF6WH68 1400 aa17.22■□□□□ 0.35
TRIM40-208ENST00000489892 RAPGEF3O95398 923 aa17.22■□□□□ 0.35
TRIM40-208ENST00000489892 SCAPERQ9BY12 1400 aa17.21■□□□□ 0.35
TRIM40-208ENST00000489892 PLXNC1O60486 1568 aa17.21■□□□□ 0.35
TRIM40-208ENST00000489892 ADAMTSL3P82987 1691 aa17.2■□□□□ 0.34
TRIM40-208ENST00000489892 FRMPD1Q5SYB0 1578 aa17.2■□□□□ 0.34
TRIM40-208ENST00000489892 RRP7BPQ9NSQ0 103 aa17.2■□□□□ 0.34
TRIM40-208ENST00000489892 ARHGEF12Q9NZN5 1544 aa17.2■□□□□ 0.34
TRIM40-208ENST00000489892 PTPRMP28827 1452 aa17.19■□□□□ 0.34
TRIM40-208ENST00000489892 SPAG9O60271 1321 aaKnown RBP17.19■□□□□ 0.34
TRIM40-208ENST00000489892 ARID4BQ4LE39 1312 aaPredicted RBP17.19■□□□□ 0.34
TRIM40-208ENST00000489892 KIF15Q9NS87 1388 aa17.18■□□□□ 0.34
TRIM40-208ENST00000489892 BCORL1Q5H9F3 1711 aa17.18■□□□□ 0.34
TRIM40-208ENST00000489892 ARHGEF40Q8TER5 1519 aa17.17■□□□□ 0.34
TRIM40-208ENST00000489892 POGZQ7Z3K3 1410 aa17.17■□□□□ 0.34
TRIM40-208ENST00000489892 TRAPPC8Q9Y2L5 1435 aa17.17■□□□□ 0.34
TRIM40-208ENST00000489892 DENND4BO75064 1496 aaPredicted RBP17.17■□□□□ 0.34
TRIM40-208ENST00000489892 ANKRD50Q9ULJ7 1429 aa17.16■□□□□ 0.34
TRIM40-208ENST00000489892 MADDQ8WXG6 1647 aa17.15■□□□□ 0.34
TRIM40-208ENST00000489892 RICTORQ6R327 1708 aa17.15■□□□□ 0.34
TRIM40-208ENST00000489892 DUOX2Q9NRD8 1548 aa17.15■□□□□ 0.34
TRIM40-208ENST00000489892 ATP7AQ04656 1500 aa17.14■□□□□ 0.33
TRIM40-208ENST00000489892 ZFYVE16Q7Z3T8 1539 aa17.14■□□□□ 0.33
TRIM40-208ENST00000489892 KDM5CP41229 1560 aa17.14■□□□□ 0.33
TRIM40-208ENST00000489892 INO80Q9ULG1 1556 aaPredicted RBP17.14■□□□□ 0.33
TRIM40-208ENST00000489892 DHX57Q6P158 1386 aaKnown RBP17.14■□□□□ 0.33
TRIM40-208ENST00000489892 ERBINQ96RT1 1412 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms