RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 BCL11BQ9C0K0 894 aaPredicted RBP9.58□□□□□ -0.88
ATG4A-208ENST00000489247 STK24Q9Y6E0 443 aa9.57□□□□□ -0.88
ATG4A-208ENST00000489247 CECR2Q9BXF3 1484 aa9.56□□□□□ -0.88
ATG4A-208ENST00000489247 CABP2Q9NPB3 220 aa9.56□□□□□ -0.88
ATG4A-208ENST00000489247 TAOK2Q9UL54 1235 aa9.56□□□□□ -0.88
ATG4A-208ENST00000489247 BICRAQ9NZM4 1560 aa9.55□□□□□ -0.88
ATG4A-208ENST00000489247 HS6ST3Q8IZP7 471 aa9.54□□□□□ -0.88
ATG4A-208ENST00000489247 BAZ1AQ9NRL2 1556 aaPredicted RBP9.54□□□□□ -0.88
ATG4A-208ENST00000489247 UNC13AQ9UPW8 1703 aa9.53□□□□□ -0.88
ATG4A-208ENST00000489247 MROH2BQ7Z745 1585 aa9.52□□□□□ -0.89
ATG4A-208ENST00000489247 EFCAB3Q8N7B9 438 aa9.51□□□□□ -0.89
ATG4A-208ENST00000489247 PDCD7Q8N8D1 485 aaKnown RBP9.5□□□□□ -0.89
ATG4A-208ENST00000489247 L3MBTL3Q96JM7 780 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-208ENST00000489247 ERBB3P21860 1342 aa9.49□□□□□ -0.89
ATG4A-208ENST00000489247 GOLGA2Q08379 1002 aa9.48□□□□□ -0.89
ATG4A-208ENST00000489247 NKX1-1Q15270 411 aaPredicted RBP9.47□□□□□ -0.89
ATG4A-208ENST00000489247 MKRN3Q13064 507 aaKnown RBP9.46□□□□□ -0.9
ATG4A-208ENST00000489247 SMARCA4P51532 1647 aa9.45□□□□□ -0.9
ATG4A-208ENST00000489247 HOXB1P14653 301 aaPredicted RBP9.45□□□□□ -0.9
ATG4A-208ENST00000489247 HOXB3P14651 431 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-208ENST00000489247 PHF8Q9UPP1 1060 aa9.44□□□□□ -0.9
ATG4A-208ENST00000489247 PTGER2P43116 358 aa9.43□□□□□ -0.9
ATG4A-208ENST00000489247 MFRPQ9BY79 579 aa9.43□□□□□ -0.9
ATG4A-208ENST00000489247 PEG3Q9GZU2 1588 aa9.42□□□□□ -0.9
ATG4A-208ENST00000489247 DNAJC5Q9H3Z4 198 aa9.42□□□□□ -0.9
ATG4A-208ENST00000489247 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.42□□□□□ -0.9
ATG4A-208ENST00000489247 SOX12O15370 315 aa9.4□□□□□ -0.9
ATG4A-208ENST00000489247 PLCB2Q00722 1185 aa9.4□□□□□ -0.9
ATG4A-208ENST00000489247 DPY19L2Q6NUT2 758 aa9.4□□□□□ -0.9
ATG4A-208ENST00000489247 ZNF710Q8N1W2 664 aa9.4□□□□□ -0.9
ATG4A-208ENST00000489247 MS4A4AQ96JQ5 239 aa9.4□□□□□ -0.9
ATG4A-208ENST00000489247 VARS2Q5ST30 1063 aaKnown RBP9.39□□□□□ -0.91
ATG4A-208ENST00000489247 ILDR1Q86SU0 546 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-208ENST00000489247 FBXO22Q8NEZ5 403 aa9.39□□□□□ -0.91
ATG4A-208ENST00000489247 BBXQ8WY36 941 aaPredicted RBP9.39□□□□□ -0.91
ATG4A-208ENST00000489247 TOP2AP11388 1531 aaKnown RBP9.39□□□□□ -0.91
ATG4A-208ENST00000489247 WIZO95785 1651 aa9.39□□□□□ -0.91
ATG4A-208ENST00000489247 NLRP6P59044 892 aa9.36□□□□□ -0.91
ATG4A-208ENST00000489247 GTPBP6O43824 516 aaPredicted RBP9.35□□□□□ -0.91
ATG4A-208ENST00000489247 PLA2G2EQ9NZK7 142 aa9.35□□□□□ -0.91
ATG4A-208ENST00000489247 PPP1R37O75864 691 aa9.34□□□□□ -0.91
ATG4A-208ENST00000489247 DOK7Q18PE1 504 aa9.33□□□□□ -0.92
ATG4A-208ENST00000489247 ZNF687Q8N1G0 1237 aa9.33□□□□□ -0.92
ATG4A-208ENST00000489247 ATAD2BQ9ULI0 1458 aa9.31□□□□□ -0.92
ATG4A-208ENST00000489247 SMARCA2P51531 1590 aa9.3□□□□□ -0.92
ATG4A-208ENST00000489247 EIF4G1Q04637 1599 aaKnown RBP9.3□□□□□ -0.92
ATG4A-208ENST00000489247 HAP1P54257 671 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-208ENST00000489247 PAXIP1Q6ZW49 1069 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-208ENST00000489247 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.3□□□□□ -0.92
ATG4A-208ENST00000489247 CFAP44Q96MT7 982 aa9.29□□□□□ -0.92
ATG4A-208ENST00000489247 CCDC88BA6NC98 1476 aa9.28□□□□□ -0.92
ATG4A-208ENST00000489247 SPRYD3Q8NCJ5 442 aa9.27□□□□□ -0.93
ATG4A-208ENST00000489247 RIMBP2O15034 1052 aa9.26□□□□□ -0.93
ATG4A-208ENST00000489247 ANKRD13DQ6ZTN6 518 aa9.26□□□□□ -0.93
ATG4A-208ENST00000489247 BOLA1Q9Y3E2 137 aa9.25□□□□□ -0.93
ATG4A-208ENST00000489247 NCAPD3P42695 1498 aa9.25□□□□□ -0.93
ATG4A-208ENST00000489247 MICALL2Q8IY33 904 aa9.24□□□□□ -0.93
ATG4A-208ENST00000489247 HMGXB3Q12766 1538 aa9.24□□□□□ -0.93
ATG4A-208ENST00000489247 RYDENQ9NUL5 291 aaKnown RBP9.23□□□□□ -0.93
ATG4A-208ENST00000489247 G3V3G9 751 aa9.22□□□□□ -0.93
ATG4A-208ENST00000489247 BAZ1BQ9UIG0 1483 aaKnown RBP9.21□□□□□ -0.93
ATG4A-208ENST00000489247 CADPS2Q86UW7 1296 aa9.17□□□□□ -0.94
ATG4A-208ENST00000489247 ZSWIM6Q9HCJ5 1215 aa9.17□□□□□ -0.94
ATG4A-208ENST00000489247 HCSTQ9UBK5 93 aa9.17□□□□□ -0.94
ATG4A-208ENST00000489247 LSM11P83369 360 aaKnown RBP eCLIP9.16□□□□□ -0.94
ATG4A-208ENST00000489247 TMEM92Q6UXU6 159 aa9.16□□□□□ -0.94
ATG4A-208ENST00000489247 TSHZ2Q9NRE2 1034 aa9.15□□□□□ -0.94
ATG4A-208ENST00000489247 GPR153Q6NV75 609 aa9.12□□□□□ -0.95
ATG4A-208ENST00000489247 VSIG10Q8N0Z9 540 aa9.1□□□□□ -0.95
ATG4A-208ENST00000489247 IRX2Q9BZI1 471 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-208ENST00000489247 NCKAP5LQ9HCH0 1330 aa9.09□□□□□ -0.95
ATG4A-208ENST00000489247 C2orf72A6NCS6 295 aa9.08□□□□□ -0.96
ATG4A-208ENST00000489247 KDM2AQ9Y2K7 1162 aa9.08□□□□□ -0.96
ATG4A-208ENST00000489247 KIF3CO14782 793 aa9.07□□□□□ -0.96
ATG4A-208ENST00000489247 CRISPLD2Q9H0B8 497 aa9.06□□□□□ -0.96
ATG4A-208ENST00000489247 CFTRP13569 1480 aa9.06□□□□□ -0.96
ATG4A-208ENST00000489247 WRNQ14191 1432 aaPredicted RBP eCLIP9.05□□□□□ -0.96
ATG4A-208ENST00000489247 TMC2Q8TDI7 906 aa9.04□□□□□ -0.96
ATG4A-208ENST00000489247 EEA1Q15075 1411 aa9.04□□□□□ -0.96
ATG4A-208ENST00000489247 ABCC8Q09428 1581 aa9.03□□□□□ -0.96
ATG4A-208ENST00000489247 CC2D2AQ9P2K1 1620 aa9.03□□□□□ -0.96
ATG4A-208ENST00000489247 ZNF316A6NFI3 1004 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-208ENST00000489247 LARP6Q9BRS8 491 aaKnown RBP9.03□□□□□ -0.96
ATG4A-208ENST00000489247 GPHNQ9NQX3 736 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-208ENST00000489247 RGS20O76081 388 aa9.02□□□□□ -0.97
ATG4A-208ENST00000489247 DSG2Q14126 1118 aa9.02□□□□□ -0.97
ATG4A-208ENST00000489247 PDE4AP27815 886 aa9.01□□□□□ -0.97
ATG4A-208ENST00000489247 ARSIQ5FYB1 569 aa9.01□□□□□ -0.97
ATG4A-208ENST00000489247 PBX2P40425 430 aa8.99□□□□□ -0.97
ATG4A-208ENST00000489247 CADPSQ9ULU8 1353 aa8.99□□□□□ -0.97
ATG4A-208ENST00000489247 FOXK1P85037 733 aa8.98□□□□□ -0.97
ATG4A-208ENST00000489247 MFSD10Q14728 455 aa8.98□□□□□ -0.97
ATG4A-208ENST00000489247 PPP1R15BQ5SWA1 713 aa8.98□□□□□ -0.97
ATG4A-208ENST00000489247 PLPP6Q8IY26 295 aa8.98□□□□□ -0.97
ATG4A-208ENST00000489247 LOC105371045A0A1W2PR82 267 aa8.97□□□□□ -0.97
ATG4A-208ENST00000489247 DDX27Q96GQ7 796 aaKnown RBP8.97□□□□□ -0.97
ATG4A-208ENST00000489247 SYNJ1O43426 1573 aa8.97□□□□□ -0.97
ATG4A-208ENST00000489247 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
ATG4A-208ENST00000489247 BIVM-ERCC5R4GMW8 1640 aa8.94□□□□□ -0.98
ATG4A-208ENST00000489247 POTEEQ6S8J3 1075 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms