RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 CDC42BPBQ9Y5S2 1711 aa33.9■■■■□ 3.02
LIME1-207ENST00000489212 PREX2Q70Z35 1606 aa33.86■■■■□ 3.01
LIME1-207ENST00000489212 POGZQ7Z3K3 1410 aa33.86■■■■□ 3.01
LIME1-207ENST00000489212 ZMYM4Q5VZL5 1548 aa33.85■■■■□ 3.01
LIME1-207ENST00000489212 ARHGEF40Q8TER5 1519 aa33.84■■■■□ 3.01
LIME1-207ENST00000489212 CDC42BPAQ5VT25 1732 aa33.83■■■■□ 3.01
LIME1-207ENST00000489212 MTUS2Q5JR59 1369 aa33.8■■■■□ 3
LIME1-207ENST00000489212 VPS8Q8N3P4 1428 aa33.78■■■■□ 3
LIME1-207ENST00000489212 YEATS2Q9ULM3 1422 aa33.77■■■■□ 3
LIME1-207ENST00000489212 ZFYVE16Q7Z3T8 1539 aa33.76■■■■□ 3
LIME1-207ENST00000489212 GPATCH8Q9UKJ3 1502 aaKnown RBP33.75■■■□□ 2.99
LIME1-207ENST00000489212 MAGI2Q86UL8 1455 aa33.75■■■□□ 2.99
LIME1-207ENST00000489212 EHBP1L1Q8N3D4 1523 aa33.73■■■□□ 2.99
LIME1-207ENST00000489212 ABCC1P33527 1531 aa33.72■■■□□ 2.99
LIME1-207ENST00000489212 ARHGEF12Q9NZN5 1544 aa33.72■■■□□ 2.99
LIME1-207ENST00000489212 ZNF518AQ6AHZ1 1483 aa33.71■■■□□ 2.99
LIME1-207ENST00000489212 AFAP1Q8N556 730 aa33.71■■■□□ 2.99
LIME1-207ENST00000489212 KDM5CP41229 1560 aa33.68■■■□□ 2.98
LIME1-207ENST00000489212 CCNB3Q8WWL7 1395 aa33.67■■■□□ 2.98
LIME1-207ENST00000489212 SIGLEC1Q9BZZ2 1709 aa33.67■■■□□ 2.98
LIME1-207ENST00000489212 TIAM1Q13009 1591 aa33.66■■■□□ 2.98
LIME1-207ENST00000489212 ARID4BQ4LE39 1312 aaPredicted RBP33.66■■■□□ 2.98
LIME1-207ENST00000489212 ITSN2Q9NZM3 1697 aa33.66■■■□□ 2.98
LIME1-207ENST00000489212 TRAPPC8Q9Y2L5 1435 aa33.66■■■□□ 2.98
LIME1-207ENST00000489212 ADAMTSL3P82987 1691 aa33.65■■■□□ 2.98
LIME1-207ENST00000489212 SAMD9LQ8IVG5 1584 aa33.65■■■□□ 2.98
LIME1-207ENST00000489212 BCORL1Q5H9F3 1711 aa33.65■■■□□ 2.98
LIME1-207ENST00000489212 ZNF777Q9ULD5 760 aaPredicted RBP33.64■■■□□ 2.98
LIME1-207ENST00000489212 CFDP1Q9UEE9 299 aaPredicted RBP33.6■■■□□ 2.97
LIME1-207ENST00000489212 ATP10AO60312 1499 aa33.59■■■□□ 2.97
LIME1-207ENST00000489212 HECW2Q9P2P5 1572 aa33.58■■■□□ 2.97
LIME1-207ENST00000489212 SYCP2Q9BX26 1530 aa33.57■■■□□ 2.96
LIME1-207ENST00000489212 MLH3Q9UHC1 1453 aa33.56■■■□□ 2.96
LIME1-207ENST00000489212 NCOA2Q15596 1464 aa33.55■■■□□ 2.96
LIME1-207ENST00000489212 C9orf84Q5VXU9 1444 aa33.54■■■□□ 2.96
LIME1-207ENST00000489212 SUPT6HQ7KZ85 1726 aaKnown RBP33.54■■■□□ 2.96
LIME1-207ENST00000489212 MADDQ8WXG6 1647 aa33.53■■■□□ 2.96
LIME1-207ENST00000489212 LRRC9Q6ZRR7 1453 aa33.53■■■□□ 2.96
LIME1-207ENST00000489212 DIP2CQ9Y2E4 1556 aa33.52■■■□□ 2.96
LIME1-207ENST00000489212 HNRNPMP52272 730 aaKnown RBP eCLIP33.52■■■□□ 2.96
LIME1-207ENST00000489212 MYT1LQ9UL68 1186 aa33.51■■■□□ 2.95
LIME1-207ENST00000489212 MAP3K1Q13233 1512 aa33.51■■■□□ 2.95
LIME1-207ENST00000489212 KIAA1107Q9UPP5 1409 aa33.51■■■□□ 2.95
LIME1-207ENST00000489212 PTPRMP28827 1452 aa33.5■■■□□ 2.95
LIME1-207ENST00000489212 ABCA6Q8N139 1617 aa33.5■■■□□ 2.95
LIME1-207ENST00000489212 PLEKHH2Q8IVE3 1493 aa33.49■■■□□ 2.95
LIME1-207ENST00000489212 ZNF644Q9H582 1327 aaPredicted RBP33.49■■■□□ 2.95
LIME1-207ENST00000489212 KANK4Q5T7N3 995 aaPredicted RBP33.48■■■□□ 2.95
LIME1-207ENST00000489212 KIDINS220Q9ULH0 1771 aa33.47■■■□□ 2.95
LIME1-207ENST00000489212 MLECQ14165 292 aa33.44■■■□□ 2.94
LIME1-207ENST00000489212 RIMS1Q86UR5 1692 aaKnown RBP33.42■■■□□ 2.94
LIME1-207ENST00000489212 REREQ9P2R6 1566 aa33.42■■■□□ 2.94
LIME1-207ENST00000489212 MBD5Q9P267 1494 aa33.39■■■□□ 2.94
LIME1-207ENST00000489212 SPAG9O60271 1321 aaKnown RBP33.39■■■□□ 2.94
LIME1-207ENST00000489212 INO80Q9ULG1 1556 aaPredicted RBP33.34■■■□□ 2.93
LIME1-207ENST00000489212 ATP7AQ04656 1500 aa33.34■■■□□ 2.93
LIME1-207ENST00000489212 FER1L4A9Z1Z3 1794 aa33.34■■■□□ 2.93
LIME1-207ENST00000489212 CAMSAP2Q08AD1 1489 aa33.33■■■□□ 2.93
LIME1-207ENST00000489212 AGLP35573 1532 aa33.32■■■□□ 2.92
LIME1-207ENST00000489212 APLP2Q06481 763 aa33.29■■■□□ 2.92
LIME1-207ENST00000489212 MYOM3Q5VTT5 1437 aa33.23■■■□□ 2.91
LIME1-207ENST00000489212 PLPPR3Q6T4P5 718 aa33.23■■■□□ 2.91
LIME1-207ENST00000489212 CCDC141Q6ZP82 1450 aa33.23■■■□□ 2.91
LIME1-207ENST00000489212 PLXNC1O60486 1568 aa33.2■■■□□ 2.91
LIME1-207ENST00000489212 RTEL1-TNFRSF6BF6WH68 1400 aa33.19■■■□□ 2.9
LIME1-207ENST00000489212 A2MP01023 1474 aa33.19■■■□□ 2.9
LIME1-207ENST00000489212 ARHGEF5Q12774 1597 aa33.18■■■□□ 2.9
LIME1-207ENST00000489212 MIA2Q96PC5 1412 aa33.18■■■□□ 2.9
LIME1-207ENST00000489212 RSPH4AQ5TD94 716 aa33.16■■■□□ 2.9
LIME1-207ENST00000489212 ADGBQ8N7X0 1667 aa33.15■■■□□ 2.9
LIME1-207ENST00000489212 CEBPAP49715 358 aaPredicted RBP33.13■■■□□ 2.89
LIME1-207ENST00000489212 LMTK3Q96Q04 1460 aa33.11■■■□□ 2.89
LIME1-207ENST00000489212 DHX29Q7Z478 1369 aaKnown RBP33.06■■■□□ 2.88
LIME1-207ENST00000489212 TSPY4P0CV99 314 aa33.05■■■□□ 2.88
LIME1-207ENST00000489212 TSPY10P0CW01 314 aa33.05■■■□□ 2.88
LIME1-207ENST00000489212 ESF1Q9H501 851 aaKnown RBP33.04■■■□□ 2.88
LIME1-207ENST00000489212 C3P01024 1663 aa33.04■■■□□ 2.88
LIME1-207ENST00000489212 PTPN23Q9H3S7 1636 aa33.03■■■□□ 2.88
LIME1-207ENST00000489212 MAST1Q9Y2H9 1570 aa33.01■■■□□ 2.88
LIME1-207ENST00000489212 FGD6Q6ZV73 1430 aa33.01■■■□□ 2.87
LIME1-207ENST00000489212 CNTLNQ9NXG0 1405 aa33.01■■■□□ 2.87
LIME1-207ENST00000489212 GGT6Q6P531 493 aa32.99■■■□□ 2.87
LIME1-207ENST00000489212 TCOF1Q13428 1488 aaKnown RBP32.96■■■□□ 2.87
LIME1-207ENST00000489212 HSPA2P54652 639 aa32.95■■■□□ 2.87
LIME1-207ENST00000489212 MROH2AA6NES4 1674 aa32.94■■■□□ 2.86
LIME1-207ENST00000489212 CLTCQ00610 1675 aaKnown RBP32.94■■■□□ 2.86
LIME1-207ENST00000489212 PREX1Q8TCU6 1659 aa32.94■■■□□ 2.86
LIME1-207ENST00000489212 ABCC5O15440 1437 aa32.93■■■□□ 2.86
LIME1-207ENST00000489212 SETD1BQ9UPS6 1966 aaKnown RBP32.92■■■□□ 2.86
LIME1-207ENST00000489212 KIF3BO15066 747 aa32.92■■■□□ 2.86
LIME1-207ENST00000489212 ZMYM3Q14202 1370 aa32.92■■■□□ 2.86
LIME1-207ENST00000489212 CROCC2H7BZ55 1655 aa32.89■■■□□ 2.86
LIME1-207ENST00000489212 PPP6R1Q9UPN7 881 aa32.89■■■□□ 2.86
LIME1-207ENST00000489212 DNMT1P26358 1616 aaKnown RBP32.88■■■□□ 2.85
LIME1-207ENST00000489212 DAPK1P53355 1430 aa32.87■■■□□ 2.85
LIME1-207ENST00000489212 SHANK2Q9UPX8 1470 aa32.86■■■□□ 2.85
LIME1-207ENST00000489212 UHRF1BP1Q6BDS2 1440 aa32.84■■■□□ 2.85
LIME1-207ENST00000489212 NPATQ14207 1427 aa32.8■■■□□ 2.84
LIME1-207ENST00000489212 DUOX2Q9NRD8 1548 aa32.78■■■□□ 2.84
LIME1-207ENST00000489212 PTPRKQ15262 1439 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms