RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 CDC42BPBQ9Y5S2 1711 aa22.61■■□□□ 1.21
BRCA1-218ENST00000489037 PREX2Q70Z35 1606 aa22.6■■□□□ 1.21
BRCA1-218ENST00000489037 FRMPD1Q5SYB0 1578 aa22.59■■□□□ 1.21
BRCA1-218ENST00000489037 CDC42BPAQ5VT25 1732 aa22.58■■□□□ 1.21
BRCA1-218ENST00000489037 KDM4FA0A1W2PPD8 638 aa22.58■■□□□ 1.21
BRCA1-218ENST00000489037 EHBP1L1Q8N3D4 1523 aa22.57■■□□□ 1.2
BRCA1-218ENST00000489037 CCNB3Q8WWL7 1395 aa22.55■■□□□ 1.2
BRCA1-218ENST00000489037 POGZQ7Z3K3 1410 aa22.54■■□□□ 1.2
BRCA1-218ENST00000489037 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
BRCA1-218ENST00000489037 ZMYM4Q5VZL5 1548 aa22.52■■□□□ 1.2
BRCA1-218ENST00000489037 TIAM1Q13009 1591 aa22.52■■□□□ 1.2
BRCA1-218ENST00000489037 MYT1LQ9UL68 1186 aa22.52■■□□□ 1.2
BRCA1-218ENST00000489037 MAGI2Q86UL8 1455 aa22.52■■□□□ 1.2
BRCA1-218ENST00000489037 APLP2Q06481 763 aa22.51■■□□□ 1.19
BRCA1-218ENST00000489037 CFDP1Q9UEE9 299 aaPredicted RBP22.51■■□□□ 1.19
BRCA1-218ENST00000489037 GPATCH8Q9UKJ3 1502 aaKnown RBP22.51■■□□□ 1.19
BRCA1-218ENST00000489037 ZNF518AQ6AHZ1 1483 aa22.5■■□□□ 1.19
BRCA1-218ENST00000489037 ARID4BQ4LE39 1312 aaPredicted RBP22.5■■□□□ 1.19
BRCA1-218ENST00000489037 SUPT6HQ7KZ85 1726 aaKnown RBP22.49■■□□□ 1.19
BRCA1-218ENST00000489037 ZFYVE16Q7Z3T8 1539 aa22.49■■□□□ 1.19
BRCA1-218ENST00000489037 ARHGEF40Q8TER5 1519 aa22.49■■□□□ 1.19
BRCA1-218ENST00000489037 ITSN2Q9NZM3 1697 aa22.47■■□□□ 1.19
BRCA1-218ENST00000489037 ABCC1P33527 1531 aa22.47■■□□□ 1.19
BRCA1-218ENST00000489037 AFAP1Q8N556 730 aa22.46■■□□□ 1.19
BRCA1-218ENST00000489037 MAP3K1Q13233 1512 aa22.46■■□□□ 1.19
BRCA1-218ENST00000489037 PLEKHH2Q8IVE3 1493 aa22.43■■□□□ 1.18
BRCA1-218ENST00000489037 LRRC9Q6ZRR7 1453 aa22.42■■□□□ 1.18
BRCA1-218ENST00000489037 YEATS2Q9ULM3 1422 aa22.42■■□□□ 1.18
BRCA1-218ENST00000489037 KDM5CP41229 1560 aa22.42■■□□□ 1.18
BRCA1-218ENST00000489037 SAMD9LQ8IVG5 1584 aa22.42■■□□□ 1.18
BRCA1-218ENST00000489037 NCOA2Q15596 1464 aa22.41■■□□□ 1.18
BRCA1-218ENST00000489037 HECW2Q9P2P5 1572 aa22.4■■□□□ 1.18
BRCA1-218ENST00000489037 ARHGEF12Q9NZN5 1544 aa22.4■■□□□ 1.18
BRCA1-218ENST00000489037 TRAPPC8Q9Y2L5 1435 aa22.4■■□□□ 1.18
BRCA1-218ENST00000489037 HNRNPMP52272 730 aaKnown RBP eCLIP22.39■■□□□ 1.17
BRCA1-218ENST00000489037 ATP10AO60312 1499 aa22.39■■□□□ 1.17
BRCA1-218ENST00000489037 SYCP2Q9BX26 1530 aa22.38■■□□□ 1.17
BRCA1-218ENST00000489037 KIAA1107Q9UPP5 1409 aa22.38■■□□□ 1.17
BRCA1-218ENST00000489037 BCORL1Q5H9F3 1711 aa22.37■■□□□ 1.17
BRCA1-218ENST00000489037 MLH3Q9UHC1 1453 aa22.37■■□□□ 1.17
BRCA1-218ENST00000489037 C9orf84Q5VXU9 1444 aa22.36■■□□□ 1.17
BRCA1-218ENST00000489037 KANK4Q5T7N3 995 aaPredicted RBP22.35■■□□□ 1.17
BRCA1-218ENST00000489037 SPAG9O60271 1321 aaKnown RBP22.33■■□□□ 1.17
BRCA1-218ENST00000489037 ADAMTSL3P82987 1691 aa22.33■■□□□ 1.17
BRCA1-218ENST00000489037 ZNF644Q9H582 1327 aaPredicted RBP22.31■■□□□ 1.16
BRCA1-218ENST00000489037 DIP2CQ9Y2E4 1556 aa22.3■■□□□ 1.16
BRCA1-218ENST00000489037 MLECQ14165 292 aa22.3■■□□□ 1.16
BRCA1-218ENST00000489037 KIDINS220Q9ULH0 1771 aa22.3■■□□□ 1.16
BRCA1-218ENST00000489037 ABCA6Q8N139 1617 aa22.28■■□□□ 1.16
BRCA1-218ENST00000489037 RSPH4AQ5TD94 716 aa22.28■■□□□ 1.16
BRCA1-218ENST00000489037 MADDQ8WXG6 1647 aa22.27■■□□□ 1.16
BRCA1-218ENST00000489037 CAMSAP2Q08AD1 1489 aa22.27■■□□□ 1.16
BRCA1-218ENST00000489037 SIGLEC1Q9BZZ2 1709 aa22.26■■□□□ 1.15
BRCA1-218ENST00000489037 REREQ9P2R6 1566 aa22.25■■□□□ 1.15
BRCA1-218ENST00000489037 ATP7AQ04656 1500 aa22.25■■□□□ 1.15
BRCA1-218ENST00000489037 RIMS1Q86UR5 1692 aaKnown RBP22.24■■□□□ 1.15
BRCA1-218ENST00000489037 MYOM3Q5VTT5 1437 aa22.23■■□□□ 1.15
BRCA1-218ENST00000489037 PTPRMP28827 1452 aa22.23■■□□□ 1.15
BRCA1-218ENST00000489037 MBD5Q9P267 1494 aa22.23■■□□□ 1.15
BRCA1-218ENST00000489037 FER1L4A9Z1Z3 1794 aa22.22■■□□□ 1.15
BRCA1-218ENST00000489037 MIA2Q96PC5 1412 aa22.22■■□□□ 1.15
BRCA1-218ENST00000489037 CCDC141Q6ZP82 1450 aa22.21■■□□□ 1.15
BRCA1-218ENST00000489037 INO80Q9ULG1 1556 aaPredicted RBP22.21■■□□□ 1.15
BRCA1-218ENST00000489037 TSPY4P0CV99 314 aa22.2■■□□□ 1.14
BRCA1-218ENST00000489037 TSPY10P0CW01 314 aa22.2■■□□□ 1.14
BRCA1-218ENST00000489037 ESF1Q9H501 851 aaKnown RBP22.19■■□□□ 1.14
BRCA1-218ENST00000489037 AGLP35573 1532 aa22.19■■□□□ 1.14
BRCA1-218ENST00000489037 RTEL1-TNFRSF6BF6WH68 1400 aa22.18■■□□□ 1.14
BRCA1-218ENST00000489037 ADGBQ8N7X0 1667 aa22.17■■□□□ 1.14
BRCA1-218ENST00000489037 ARHGEF5Q12774 1597 aa22.17■■□□□ 1.14
BRCA1-218ENST00000489037 PLPPR3Q6T4P5 718 aa22.16■■□□□ 1.14
BRCA1-218ENST00000489037 A2MP01023 1474 aa22.15■■□□□ 1.14
BRCA1-218ENST00000489037 PTPN23Q9H3S7 1636 aa22.11■■□□□ 1.13
BRCA1-218ENST00000489037 FGD6Q6ZV73 1430 aa22.08■■□□□ 1.13
BRCA1-218ENST00000489037 PLXNC1O60486 1568 aa22.08■■□□□ 1.12
BRCA1-218ENST00000489037 DHX29Q7Z478 1369 aaKnown RBP22.07■■□□□ 1.12
BRCA1-218ENST00000489037 GGT6Q6P531 493 aa22.06■■□□□ 1.12
BRCA1-218ENST00000489037 CNTLNQ9NXG0 1405 aa22.06■■□□□ 1.12
BRCA1-218ENST00000489037 MAST1Q9Y2H9 1570 aa22.05■■□□□ 1.12
BRCA1-218ENST00000489037 SETD1BQ9UPS6 1966 aaKnown RBP22.04■■□□□ 1.12
BRCA1-218ENST00000489037 TCOF1Q13428 1488 aaKnown RBP22.03■■□□□ 1.12
BRCA1-218ENST00000489037 CEBPAP49715 358 aaPredicted RBP22.02■■□□□ 1.12
BRCA1-218ENST00000489037 PPP6R1Q9UPN7 881 aa22.02■■□□□ 1.12
BRCA1-218ENST00000489037 KIF3BO15066 747 aa22.01■■□□□ 1.11
BRCA1-218ENST00000489037 FAM50AQ14320 339 aaKnown RBP22■■□□□ 1.11
BRCA1-218ENST00000489037 CROCC2H7BZ55 1655 aa21.99■■□□□ 1.11
BRCA1-218ENST00000489037 C3P01024 1663 aa21.99■■□□□ 1.11
BRCA1-218ENST00000489037 MROH2AA6NES4 1674 aa21.98■■□□□ 1.11
BRCA1-218ENST00000489037 DNMT1P26358 1616 aaKnown RBP21.98■■□□□ 1.11
BRCA1-218ENST00000489037 ABCC5O15440 1437 aa21.97■■□□□ 1.11
BRCA1-218ENST00000489037 DAPK1P53355 1430 aa21.97■■□□□ 1.11
BRCA1-218ENST00000489037 SHANK2Q9UPX8 1470 aa21.97■■□□□ 1.11
BRCA1-218ENST00000489037 CLTCQ00610 1675 aaKnown RBP21.97■■□□□ 1.11
BRCA1-218ENST00000489037 PPARGC1BQ86YN6 1023 aaKnown RBP21.96■■□□□ 1.11
BRCA1-218ENST00000489037 PREX1Q8TCU6 1659 aa21.95■■□□□ 1.1
BRCA1-218ENST00000489037 ZMYM3Q14202 1370 aa21.94■■□□□ 1.1
BRCA1-218ENST00000489037 LMTK3Q96Q04 1460 aa21.93■■□□□ 1.1
BRCA1-218ENST00000489037 DUOX2Q9NRD8 1548 aa21.92■■□□□ 1.1
BRCA1-218ENST00000489037 ANKRD30AQ9BXX3 1397 aa21.91■■□□□ 1.1
BRCA1-218ENST00000489037 KIF15Q9NS87 1388 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms