RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ASXL2Q76L83 1435 aa18.02■□□□□ 0.48
HDAC6-230ENST00000488543 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.01■□□□□ 0.47
HDAC6-230ENST00000488543 ITSN2Q9NZM3 1697 aa18.01■□□□□ 0.47
HDAC6-230ENST00000488543 CHIC2Q9UKJ5 165 aa18■□□□□ 0.47
HDAC6-230ENST00000488543 WDR7Q9Y4E6 1490 aa17.99■□□□□ 0.47
HDAC6-230ENST00000488543 TTC37Q6PGP7 1564 aa17.99■□□□□ 0.47
HDAC6-230ENST00000488543 CDC42BPAQ5VT25 1732 aa17.98■□□□□ 0.47
HDAC6-230ENST00000488543 CLSPNQ9HAW4 1339 aa17.96■□□□□ 0.47
HDAC6-230ENST00000488543 HFM1A2PYH4 1435 aa17.96■□□□□ 0.47
HDAC6-230ENST00000488543 CAMSAP2Q08AD1 1489 aa17.95■□□□□ 0.46
HDAC6-230ENST00000488543 DNMT1P26358 1616 aaKnown RBP17.94■□□□□ 0.46
HDAC6-230ENST00000488543 HNRNPMP52272 730 aaKnown RBP eCLIP17.94■□□□□ 0.46
HDAC6-230ENST00000488543 GCC2Q8IWJ2 1684 aa17.93■□□□□ 0.46
HDAC6-230ENST00000488543 NAIPQ13075 1403 aa17.93■□□□□ 0.46
HDAC6-230ENST00000488543 RRP7BPQ9NSQ0 103 aa17.93■□□□□ 0.46
HDAC6-230ENST00000488543 CDC42BPBQ9Y5S2 1711 aa17.92■□□□□ 0.46
HDAC6-230ENST00000488543 MAPKBP1O60336 1514 aa17.92■□□□□ 0.46
HDAC6-230ENST00000488543 ABCC5O15440 1437 aa17.91■□□□□ 0.46
HDAC6-230ENST00000488543 DAPK1P53355 1430 aa17.9■□□□□ 0.46
HDAC6-230ENST00000488543 AKNAQ7Z591 1439 aa17.9■□□□□ 0.46
HDAC6-230ENST00000488543 ARHGAP5Q13017 1502 aa17.9■□□□□ 0.46
HDAC6-230ENST00000488543 PLCH2O75038 1416 aa17.9■□□□□ 0.46
HDAC6-230ENST00000488543 PREX2Q70Z35 1606 aa17.89■□□□□ 0.45
HDAC6-230ENST00000488543 EFCAB2Q5VUJ9 269 aa17.87■□□□□ 0.45
HDAC6-230ENST00000488543 CROCC2H7BZ55 1655 aa17.86■□□□□ 0.45
HDAC6-230ENST00000488543 SAMD9LQ8IVG5 1584 aa17.86■□□□□ 0.45
HDAC6-230ENST00000488543 MYO5CQ9NQX4 1742 aa17.86■□□□□ 0.45
HDAC6-230ENST00000488543 KDM6BO15054 1643 aa17.85■□□□□ 0.45
HDAC6-230ENST00000488543 DIEXFQ68CQ4 756 aaKnown RBP17.84■□□□□ 0.45
HDAC6-230ENST00000488543 MBD5Q9P267 1494 aa17.83■□□□□ 0.45
HDAC6-230ENST00000488543 ABCA9Q8IUA7 1624 aa17.83■□□□□ 0.44
HDAC6-230ENST00000488543 ROCK1Q13464 1354 aa17.83■□□□□ 0.44
HDAC6-230ENST00000488543 ADGBQ8N7X0 1667 aa17.82■□□□□ 0.44
HDAC6-230ENST00000488543 ARHGEF12Q9NZN5 1544 aa17.81■□□□□ 0.44
HDAC6-230ENST00000488543 CD109Q6YHK3 1445 aa17.81■□□□□ 0.44
HDAC6-230ENST00000488543 SYCP2Q9BX26 1530 aa17.81■□□□□ 0.44
HDAC6-230ENST00000488543 TSPY4P0CV99 314 aa17.8■□□□□ 0.44
HDAC6-230ENST00000488543 TSPY10P0CW01 314 aa17.8■□□□□ 0.44
HDAC6-230ENST00000488543 FAM69CQ0P6D2 419 aa17.8■□□□□ 0.44
HDAC6-230ENST00000488543 NEUROD1Q13562 356 aa17.8■□□□□ 0.44
HDAC6-230ENST00000488543 FANCAO15360 1455 aa17.79■□□□□ 0.44
HDAC6-230ENST00000488543 AFAP1Q8N556 730 aa17.78■□□□□ 0.44
HDAC6-230ENST00000488543 ADGRL2O95490 1459 aa17.77■□□□□ 0.44
HDAC6-230ENST00000488543 ARHGEF5Q12774 1597 aa17.77■□□□□ 0.43
HDAC6-230ENST00000488543 NCOA1Q15788 1441 aa17.76■□□□□ 0.43
HDAC6-230ENST00000488543 KIAA1107Q9UPP5 1409 aa17.76■□□□□ 0.43
HDAC6-230ENST00000488543 DNAJC5Q9H3Z4 198 aa17.76■□□□□ 0.43
HDAC6-230ENST00000488543 C9orf84Q5VXU9 1444 aa17.75■□□□□ 0.43
HDAC6-230ENST00000488543 TRAPPC8Q9Y2L5 1435 aa17.75■□□□□ 0.43
HDAC6-230ENST00000488543 RSPH4AQ5TD94 716 aa17.75■□□□□ 0.43
HDAC6-230ENST00000488543 CCDC141Q6ZP82 1450 aa17.75■□□□□ 0.43
HDAC6-230ENST00000488543 SHANK2Q9UPX8 1470 aa17.75■□□□□ 0.43
HDAC6-230ENST00000488543 ARAP3Q8WWN8 1544 aa17.74■□□□□ 0.43
HDAC6-230ENST00000488543 ABCC1P33527 1531 aa17.72■□□□□ 0.43
HDAC6-230ENST00000488543 PLEKHH2Q8IVE3 1493 aa17.72■□□□□ 0.43
HDAC6-230ENST00000488543 SCAPERQ9BY12 1400 aa17.72■□□□□ 0.43
HDAC6-230ENST00000488543 ANKRD30AQ9BXX3 1397 aa17.72■□□□□ 0.43
HDAC6-230ENST00000488543 ACIN1Q9UKV3 1341 aaKnown RBP17.72■□□□□ 0.43
HDAC6-230ENST00000488543 DENND4BO75064 1496 aaPredicted RBP17.71■□□□□ 0.43
HDAC6-230ENST00000488543 TRIM52Q96A61 297 aa17.71■□□□□ 0.42
HDAC6-230ENST00000488543 ADGRL1O94910 1474 aa17.71■□□□□ 0.42
HDAC6-230ENST00000488543 DIP2BQ9P265 1576 aa17.69■□□□□ 0.42
HDAC6-230ENST00000488543 SIN3AQ96ST3 1273 aa17.68■□□□□ 0.42
HDAC6-230ENST00000488543 KIF15Q9NS87 1388 aa17.67■□□□□ 0.42
HDAC6-230ENST00000488543 SPAG9O60271 1321 aaKnown RBP17.66■□□□□ 0.42
HDAC6-230ENST00000488543 RAPGEF3O95398 923 aa17.66■□□□□ 0.42
HDAC6-230ENST00000488543 GLI2P10070 1586 aa17.66■□□□□ 0.42
HDAC6-230ENST00000488543 MAP3K4Q9Y6R4 1608 aa17.66■□□□□ 0.42
HDAC6-230ENST00000488543 MYT1LQ9UL68 1186 aa17.65■□□□□ 0.42
HDAC6-230ENST00000488543 ANKRD50Q9ULJ7 1429 aa17.65■□□□□ 0.42
HDAC6-230ENST00000488543 MAST1Q9Y2H9 1570 aa17.65■□□□□ 0.42
HDAC6-230ENST00000488543 ZNF316A6NFI3 1004 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-230ENST00000488543 TSPOAP1O95153 1857 aa17.63■□□□□ 0.41
HDAC6-230ENST00000488543 YTHDC1Q96MU7 727 aaKnown RBP17.62■□□□□ 0.41
HDAC6-230ENST00000488543 GTF3C3Q9Y5Q9 886 aa17.61■□□□□ 0.41
HDAC6-230ENST00000488543 FOXD1Q16676 465 aa17.6■□□□□ 0.41
HDAC6-230ENST00000488543 MPHOSPH9Q99550 1183 aa17.6■□□□□ 0.41
HDAC6-230ENST00000488543 PZPP20742 1482 aa17.6■□□□□ 0.41
HDAC6-230ENST00000488543 NEO1Q92859 1461 aa17.59■□□□□ 0.41
HDAC6-230ENST00000488543 TIMELESSQ9UNS1 1208 aa17.58■□□□□ 0.41
HDAC6-230ENST00000488543 KIF13AQ9H1H9 1805 aa17.58■□□□□ 0.4
HDAC6-230ENST00000488543 PLXNC1O60486 1568 aa17.57■□□□□ 0.4
HDAC6-230ENST00000488543 POGZQ7Z3K3 1410 aa17.57■□□□□ 0.4
HDAC6-230ENST00000488543 ZNF518AQ6AHZ1 1483 aa17.56■□□□□ 0.4
HDAC6-230ENST00000488543 SLC4A1APQ9BWU0 796 aaKnown RBP17.56■□□□□ 0.4
HDAC6-230ENST00000488543 ZFYVE16Q7Z3T8 1539 aa17.56■□□□□ 0.4
HDAC6-230ENST00000488543 CFAP74Q9C0B2 1584 aa17.56■□□□□ 0.4
HDAC6-230ENST00000488543 RTEL1-TNFRSF6BF6WH68 1400 aa17.56■□□□□ 0.4
HDAC6-230ENST00000488543 TRHP20396 242 aaPredicted RBP17.56■□□□□ 0.4
HDAC6-230ENST00000488543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.4
HDAC6-230ENST00000488543 PPRC1Q5VV67 1664 aaKnown RBP17.56■□□□□ 0.4
HDAC6-230ENST00000488543 ATP7AQ04656 1500 aa17.54■□□□□ 0.4
HDAC6-230ENST00000488543 KDM5DQ9BY66 1539 aa17.54■□□□□ 0.4
HDAC6-230ENST00000488543 NUP155O75694 1391 aa17.54■□□□□ 0.4
HDAC6-230ENST00000488543 CENPBP07199 599 aaPredicted RBP17.53■□□□□ 0.4
HDAC6-230ENST00000488543 MIER1Q8N108 512 aa17.52■□□□□ 0.39
HDAC6-230ENST00000488543 DUOX2Q9NRD8 1548 aa17.51■□□□□ 0.39
HDAC6-230ENST00000488543 ANKRD30BQ9BXX2 1392 aa17.51■□□□□ 0.39
HDAC6-230ENST00000488543 INO80Q9ULG1 1556 aaPredicted RBP17.51■□□□□ 0.39
HDAC6-230ENST00000488543 KIDINS220Q9ULH0 1771 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms