RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ZCCHC11Q5TAX3 1644 aaKnown RBP16.11■□□□□ 0.17
SKA1-204ENST00000488454 FAM69CQ0P6D2 419 aa16.09■□□□□ 0.17
SKA1-204ENST00000488454 MAPKBP1O60336 1514 aa16.09■□□□□ 0.17
SKA1-204ENST00000488454 CDK13Q14004 1512 aaKnown RBP16.09■□□□□ 0.17
SKA1-204ENST00000488454 WDR7Q9Y4E6 1490 aa16.06■□□□□ 0.16
SKA1-204ENST00000488454 MTUS2Q5JR59 1369 aa16.04■□□□□ 0.16
SKA1-204ENST00000488454 ABCC10Q5T3U5 1492 aa16.02■□□□□ 0.15
SKA1-204ENST00000488454 TROQ12816 1431 aaPredicted RBP16.02■□□□□ 0.15
SKA1-204ENST00000488454 ZBTB12Q9Y330 459 aaPredicted RBP16.01■□□□□ 0.15
SKA1-204ENST00000488454 MAP3K1Q13233 1512 aa15.99■□□□□ 0.15
SKA1-204ENST00000488454 KANK4Q5T7N3 995 aaPredicted RBP15.98■□□□□ 0.15
SKA1-204ENST00000488454 TIAM1Q13009 1591 aa15.97■□□□□ 0.15
SKA1-204ENST00000488454 LRRIQ1Q96JM4 1722 aa15.97■□□□□ 0.15
SKA1-204ENST00000488454 LRRC9Q6ZRR7 1453 aa15.95■□□□□ 0.14
SKA1-204ENST00000488454 CD109Q6YHK3 1445 aa15.94■□□□□ 0.14
SKA1-204ENST00000488454 DIP2BQ9P265 1576 aa15.94■□□□□ 0.14
SKA1-204ENST00000488454 GLI2P10070 1586 aa15.93■□□□□ 0.14
SKA1-204ENST00000488454 MAGI3Q5TCQ9 1506 aa15.93■□□□□ 0.14
SKA1-204ENST00000488454 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
SKA1-204ENST00000488454 EHBP1L1Q8N3D4 1523 aa15.92■□□□□ 0.14
SKA1-204ENST00000488454 KIF14Q15058 1648 aa15.91■□□□□ 0.14
SKA1-204ENST00000488454 CFAP43Q8NDM7 1665 aa15.91■□□□□ 0.14
SKA1-204ENST00000488454 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
SKA1-204ENST00000488454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.89■□□□□ 0.13
SKA1-204ENST00000488454 EFCAB2Q5VUJ9 269 aa15.88■□□□□ 0.13
SKA1-204ENST00000488454 CFDP1Q9UEE9 299 aaPredicted RBP15.87■□□□□ 0.13
SKA1-204ENST00000488454 ABCA9Q8IUA7 1624 aa15.86■□□□□ 0.13
SKA1-204ENST00000488454 PLCH2O75038 1416 aa15.85■□□□□ 0.13
SKA1-204ENST00000488454 NCOA2Q15596 1464 aa15.85■□□□□ 0.13
SKA1-204ENST00000488454 TEX14Q8IWB6 1497 aa15.85■□□□□ 0.13
SKA1-204ENST00000488454 KIF13AQ9H1H9 1805 aa15.84■□□□□ 0.13
SKA1-204ENST00000488454 MKRN4PQ13434 485 aaPredicted RBP15.84■□□□□ 0.13
SKA1-204ENST00000488454 ZNF777Q9ULD5 760 aaPredicted RBP15.84■□□□□ 0.13
SKA1-204ENST00000488454 SUPT6HQ7KZ85 1726 aaKnown RBP15.84■□□□□ 0.13
SKA1-204ENST00000488454 TTC37Q6PGP7 1564 aa15.83■□□□□ 0.12
SKA1-204ENST00000488454 MAP3K4Q9Y6R4 1608 aa15.83■□□□□ 0.12
SKA1-204ENST00000488454 PHLDB1Q86UU1 1377 aa15.82■□□□□ 0.12
SKA1-204ENST00000488454 GPATCH8Q9UKJ3 1502 aaKnown RBP15.82■□□□□ 0.12
SKA1-204ENST00000488454 ARHGAP5Q13017 1502 aa15.8■□□□□ 0.12
SKA1-204ENST00000488454 FANCAO15360 1455 aa15.8■□□□□ 0.12
SKA1-204ENST00000488454 TSPOAP1O95153 1857 aa15.8■□□□□ 0.12
SKA1-204ENST00000488454 NEO1Q92859 1461 aa15.78■□□□□ 0.12
SKA1-204ENST00000488454 AKNAQ7Z591 1439 aa15.77■□□□□ 0.12
SKA1-204ENST00000488454 ARAP3Q8WWN8 1544 aa15.77■□□□□ 0.11
SKA1-204ENST00000488454 MYO5CQ9NQX4 1742 aa15.77■□□□□ 0.11
SKA1-204ENST00000488454 MYOM3Q5VTT5 1437 aa15.77■□□□□ 0.11
SKA1-204ENST00000488454 RBM42Q9BTD8 480 aaKnown RBP15.76■□□□□ 0.11
SKA1-204ENST00000488454 MIA2Q96PC5 1412 aa15.75■□□□□ 0.11
SKA1-204ENST00000488454 ZNF644Q9H582 1327 aaPredicted RBP15.73■□□□□ 0.11
SKA1-204ENST00000488454 HNRNPMP52272 730 aaKnown RBP eCLIP15.73■□□□□ 0.114e-10■■■□□ 18.6
SKA1-204ENST00000488454 SCAPERQ9BY12 1400 aa15.73■□□□□ 0.11
SKA1-204ENST00000488454 CFAP74Q9C0B2 1584 aa15.73■□□□□ 0.11
SKA1-204ENST00000488454 PREX2Q70Z35 1606 aa15.72■□□□□ 0.11
SKA1-204ENST00000488454 FAM50AQ14320 339 aaKnown RBP15.72■□□□□ 0.11
SKA1-204ENST00000488454 PPRC1Q5VV67 1664 aaKnown RBP15.72■□□□□ 0.11
SKA1-204ENST00000488454 ITSN2Q9NZM3 1697 aa15.72■□□□□ 0.11
SKA1-204ENST00000488454 ADGRL1O94910 1474 aa15.71■□□□□ 0.11
SKA1-204ENST00000488454 PLEKHH2Q8IVE3 1493 aa15.71■□□□□ 0.11
SKA1-204ENST00000488454 CDC42BPAQ5VT25 1732 aa15.71■□□□□ 0.11
SKA1-204ENST00000488454 RAPGEF3O95398 923 aa15.71■□□□□ 0.11
SKA1-204ENST00000488454 RSPH4AQ5TD94 716 aa15.71■□□□□ 0.11
SKA1-204ENST00000488454 DENND4BO75064 1496 aaPredicted RBP15.71■□□□□ 0.1
SKA1-204ENST00000488454 FGD6Q6ZV73 1430 aa15.7■□□□□ 0.1
SKA1-204ENST00000488454 MYT1LQ9UL68 1186 aa15.7■□□□□ 0.1
SKA1-204ENST00000488454 CDC42BPBQ9Y5S2 1711 aa15.7■□□□□ 0.1
SKA1-204ENST00000488454 KIAA1107Q9UPP5 1409 aa15.69■□□□□ 0.1
SKA1-204ENST00000488454 TSPY4P0CV99 314 aa15.68■□□□□ 0.1
SKA1-204ENST00000488454 TSPY10P0CW01 314 aa15.68■□□□□ 0.1
SKA1-204ENST00000488454 AFAP1Q8N556 730 aa15.68■□□□□ 0.1
SKA1-204ENST00000488454 CAMSAP2Q08AD1 1489 aa15.65■□□□□ 0.1
SKA1-204ENST00000488454 SAMD9LQ8IVG5 1584 aa15.65■□□□□ 0.1
SKA1-204ENST00000488454 COL17A1Q9UMD9 1497 aaPredicted RBP15.65■□□□□ 0.1
SKA1-204ENST00000488454 KDM6BO15054 1643 aa15.65■□□□□ 0.1
SKA1-204ENST00000488454 ABCC1P33527 1531 aa15.63■□□□□ 0.09
SKA1-204ENST00000488454 PTPN23Q9H3S7 1636 aa15.63■□□□□ 0.09
SKA1-204ENST00000488454 ZNF518AQ6AHZ1 1483 aa15.63■□□□□ 0.09
SKA1-204ENST00000488454 SPAG9O60271 1321 aaKnown RBP15.63■□□□□ 0.09
SKA1-204ENST00000488454 SYCP2Q9BX26 1530 aa15.63■□□□□ 0.09
SKA1-204ENST00000488454 ARHGEF12Q9NZN5 1544 aa15.63■□□□□ 0.09
SKA1-204ENST00000488454 POGZQ7Z3K3 1410 aa15.62■□□□□ 0.09
SKA1-204ENST00000488454 TRAPPC8Q9Y2L5 1435 aa15.62■□□□□ 0.09
SKA1-204ENST00000488454 TCOF1Q13428 1488 aaKnown RBP15.62■□□□□ 0.09
SKA1-204ENST00000488454 MBD5Q9P267 1494 aa15.61■□□□□ 0.09
SKA1-204ENST00000488454 ITGAEP38570 1179 aa15.61■□□□□ 0.09
SKA1-204ENST00000488454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.61■□□□□ 0.09
SKA1-204ENST00000488454 RRBP1Q9P2E9 1410 aaKnown RBP15.6■□□□□ 0.09
SKA1-204ENST00000488454 CCDC141Q6ZP82 1450 aa15.59■□□□□ 0.09
SKA1-204ENST00000488454 SPDYE2BA6NHP3 402 aa15.57■□□□□ 0.08
SKA1-204ENST00000488454 SPDYE6P0CI01 402 aa15.57■□□□□ 0.08
SKA1-204ENST00000488454 SPDYE2Q495Y8 402 aa15.57■□□□□ 0.08
SKA1-204ENST00000488454 CHIC2Q9UKJ5 165 aa15.57■□□□□ 0.08
SKA1-204ENST00000488454 ABCC5O15440 1437 aa15.56■□□□□ 0.08
SKA1-204ENST00000488454 MAGI2Q86UL8 1455 aa15.56■□□□□ 0.08
SKA1-204ENST00000488454 ARHGEF5Q12774 1597 aa15.55■□□□□ 0.08
SKA1-204ENST00000488454 DAPK1P53355 1430 aa15.55■□□□□ 0.08
SKA1-204ENST00000488454 MLH3Q9UHC1 1453 aa15.54■□□□□ 0.08
SKA1-204ENST00000488454 RTEL1-TNFRSF6BF6WH68 1400 aa15.54■□□□□ 0.08
SKA1-204ENST00000488454 AKT1S1Q96B36 256 aa15.53■□□□□ 0.08
SKA1-204ENST00000488454 RICTORQ6R327 1708 aa15.53■□□□□ 0.08
SKA1-204ENST00000488454 C9orf84Q5VXU9 1444 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms