RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 FRMPD1Q5SYB0 1578 aa23.76■■□□□ 1.39
TRIM54-204ENST00000488321 POGZQ7Z3K3 1410 aa23.72■■□□□ 1.39
TRIM54-204ENST00000488321 ZNF777Q9ULD5 760 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-204ENST00000488321 CCNB3Q8WWL7 1395 aa23.7■■□□□ 1.38
TRIM54-204ENST00000488321 EHBP1L1Q8N3D4 1523 aa23.69■■□□□ 1.38
TRIM54-204ENST00000488321 ARID4BQ4LE39 1312 aaPredicted RBP23.68■■□□□ 1.38
TRIM54-204ENST00000488321 PREX2Q70Z35 1606 aa23.67■■□□□ 1.38
TRIM54-204ENST00000488321 GPATCH8Q9UKJ3 1502 aaKnown RBP23.67■■□□□ 1.38
TRIM54-204ENST00000488321 RICTORQ6R327 1708 aa23.67■■□□□ 1.38
TRIM54-204ENST00000488321 AFAP1Q8N556 730 aa23.66■■□□□ 1.38
TRIM54-204ENST00000488321 CFDP1Q9UEE9 299 aaPredicted RBP23.66■■□□□ 1.38
TRIM54-204ENST00000488321 MYT1LQ9UL68 1186 aa23.66■■□□□ 1.38
TRIM54-204ENST00000488321 ZMYM4Q5VZL5 1548 aa23.64■■□□□ 1.38
TRIM54-204ENST00000488321 YEATS2Q9ULM3 1422 aa23.64■■□□□ 1.37
TRIM54-204ENST00000488321 ZFYVE16Q7Z3T8 1539 aa23.64■■□□□ 1.37
TRIM54-204ENST00000488321 ZNF518AQ6AHZ1 1483 aa23.63■■□□□ 1.37
TRIM54-204ENST00000488321 MAGI2Q86UL8 1455 aa23.63■■□□□ 1.37
TRIM54-204ENST00000488321 TIAM1Q13009 1591 aa23.63■■□□□ 1.37
TRIM54-204ENST00000488321 CDC42BPBQ9Y5S2 1711 aa23.63■■□□□ 1.37
TRIM54-204ENST00000488321 ARHGEF40Q8TER5 1519 aa23.63■■□□□ 1.37
TRIM54-204ENST00000488321 ABCC1P33527 1531 aa23.6■■□□□ 1.37
TRIM54-204ENST00000488321 APLP2Q06481 763 aa23.6■■□□□ 1.37
TRIM54-204ENST00000488321 CDC42BPAQ5VT25 1732 aa23.59■■□□□ 1.37
TRIM54-204ENST00000488321 ARHGEF12Q9NZN5 1544 aa23.59■■□□□ 1.37
TRIM54-204ENST00000488321 TRAPPC8Q9Y2L5 1435 aa23.59■■□□□ 1.37
TRIM54-204ENST00000488321 NCOA2Q15596 1464 aa23.57■■□□□ 1.36
TRIM54-204ENST00000488321 LRRC9Q6ZRR7 1453 aa23.56■■□□□ 1.36
TRIM54-204ENST00000488321 HNRNPMP52272 730 aaKnown RBP eCLIP23.56■■□□□ 1.36
TRIM54-204ENST00000488321 KANK4Q5T7N3 995 aaPredicted RBP23.55■■□□□ 1.36
TRIM54-204ENST00000488321 SAMD9LQ8IVG5 1584 aa23.54■■□□□ 1.36
TRIM54-204ENST00000488321 KDM5CP41229 1560 aa23.53■■□□□ 1.36
TRIM54-204ENST00000488321 PLEKHH2Q8IVE3 1493 aa23.53■■□□□ 1.36
TRIM54-204ENST00000488321 ZNF644Q9H582 1327 aaPredicted RBP23.53■■□□□ 1.36
TRIM54-204ENST00000488321 MAP3K1Q13233 1512 aa23.53■■□□□ 1.36
TRIM54-204ENST00000488321 SYCP2Q9BX26 1530 aa23.53■■□□□ 1.36
TRIM54-204ENST00000488321 ATP10AO60312 1499 aa23.52■■□□□ 1.36
TRIM54-204ENST00000488321 SUPT6HQ7KZ85 1726 aaKnown RBP23.51■■□□□ 1.35
TRIM54-204ENST00000488321 MLECQ14165 292 aa23.51■■□□□ 1.35
TRIM54-204ENST00000488321 C9orf84Q5VXU9 1444 aa23.5■■□□□ 1.35
TRIM54-204ENST00000488321 KIAA1107Q9UPP5 1409 aa23.5■■□□□ 1.35
TRIM54-204ENST00000488321 ITSN2Q9NZM3 1697 aa23.5■■□□□ 1.35
TRIM54-204ENST00000488321 MLH3Q9UHC1 1453 aa23.49■■□□□ 1.35
TRIM54-204ENST00000488321 HECW2Q9P2P5 1572 aa23.49■■□□□ 1.35
TRIM54-204ENST00000488321 SPAG9O60271 1321 aaKnown RBP23.49■■□□□ 1.35
TRIM54-204ENST00000488321 BCORL1Q5H9F3 1711 aa23.43■■□□□ 1.34
TRIM54-204ENST00000488321 DIP2CQ9Y2E4 1556 aa23.42■■□□□ 1.34
TRIM54-204ENST00000488321 ADAMTSL3P82987 1691 aa23.41■■□□□ 1.34
TRIM54-204ENST00000488321 PTPRMP28827 1452 aa23.4■■□□□ 1.34
TRIM54-204ENST00000488321 CAMSAP2Q08AD1 1489 aa23.4■■□□□ 1.34
TRIM54-204ENST00000488321 ABCA6Q8N139 1617 aa23.4■■□□□ 1.34
TRIM54-204ENST00000488321 SIGLEC1Q9BZZ2 1709 aa23.39■■□□□ 1.34
TRIM54-204ENST00000488321 MBD5Q9P267 1494 aa23.39■■□□□ 1.34
TRIM54-204ENST00000488321 PLPPR3Q6T4P5 718 aa23.39■■□□□ 1.33
TRIM54-204ENST00000488321 MADDQ8WXG6 1647 aa23.39■■□□□ 1.33
TRIM54-204ENST00000488321 MYOM3Q5VTT5 1437 aa23.36■■□□□ 1.33
TRIM54-204ENST00000488321 KIDINS220Q9ULH0 1771 aa23.35■■□□□ 1.33
TRIM54-204ENST00000488321 ATP7AQ04656 1500 aa23.35■■□□□ 1.33
TRIM54-204ENST00000488321 RSPH4AQ5TD94 716 aa23.34■■□□□ 1.33
TRIM54-204ENST00000488321 REREQ9P2R6 1566 aa23.34■■□□□ 1.33
TRIM54-204ENST00000488321 CCDC141Q6ZP82 1450 aa23.33■■□□□ 1.33
TRIM54-204ENST00000488321 MIA2Q96PC5 1412 aa23.32■■□□□ 1.32
TRIM54-204ENST00000488321 INO80Q9ULG1 1556 aaPredicted RBP23.31■■□□□ 1.32
TRIM54-204ENST00000488321 TSPY4P0CV99 314 aa23.3■■□□□ 1.32
TRIM54-204ENST00000488321 TSPY10P0CW01 314 aa23.3■■□□□ 1.32
TRIM54-204ENST00000488321 ESF1Q9H501 851 aaKnown RBP23.3■■□□□ 1.32
TRIM54-204ENST00000488321 AGLP35573 1532 aa23.29■■□□□ 1.32
TRIM54-204ENST00000488321 RIMS1Q86UR5 1692 aaKnown RBP23.29■■□□□ 1.32
TRIM54-204ENST00000488321 RTEL1-TNFRSF6BF6WH68 1400 aa23.28■■□□□ 1.32
TRIM54-204ENST00000488321 A2MP01023 1474 aa23.28■■□□□ 1.32
TRIM54-204ENST00000488321 ARHGEF5Q12774 1597 aa23.24■■□□□ 1.31
TRIM54-204ENST00000488321 CEBPAP49715 358 aaPredicted RBP23.22■■□□□ 1.31
TRIM54-204ENST00000488321 FGD6Q6ZV73 1430 aa23.22■■□□□ 1.31
TRIM54-204ENST00000488321 FER1L4A9Z1Z3 1794 aa23.22■■□□□ 1.31
TRIM54-204ENST00000488321 GGT6Q6P531 493 aa23.21■■□□□ 1.31
TRIM54-204ENST00000488321 DHX29Q7Z478 1369 aaKnown RBP23.2■■□□□ 1.3
TRIM54-204ENST00000488321 PLXNC1O60486 1568 aa23.19■■□□□ 1.3
TRIM54-204ENST00000488321 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
TRIM54-204ENST00000488321 PTPN23Q9H3S7 1636 aa23.16■■□□□ 1.3
TRIM54-204ENST00000488321 ADGBQ8N7X0 1667 aa23.16■■□□□ 1.3
TRIM54-204ENST00000488321 KIF3BO15066 747 aa23.15■■□□□ 1.3
TRIM54-204ENST00000488321 CNTLNQ9NXG0 1405 aa23.15■■□□□ 1.3
TRIM54-204ENST00000488321 FAM50AQ14320 339 aaKnown RBP23.14■■□□□ 1.29
TRIM54-204ENST00000488321 TCOF1Q13428 1488 aaKnown RBP23.13■■□□□ 1.29
TRIM54-204ENST00000488321 ABCC5O15440 1437 aa23.13■■□□□ 1.29
TRIM54-204ENST00000488321 MAST1Q9Y2H9 1570 aa23.1■■□□□ 1.29
TRIM54-204ENST00000488321 DAPK1P53355 1430 aa23.1■■□□□ 1.29
TRIM54-204ENST00000488321 LMTK3Q96Q04 1460 aa23.1■■□□□ 1.29
TRIM54-204ENST00000488321 PPP6R1Q9UPN7 881 aa23.09■■□□□ 1.29
TRIM54-204ENST00000488321 HSPA2P54652 639 aa23.08■■□□□ 1.29
TRIM54-204ENST00000488321 CHIC2Q9UKJ5 165 aa23.08■■□□□ 1.29
TRIM54-204ENST00000488321 ZMYM3Q14202 1370 aa23.08■■□□□ 1.29
TRIM54-204ENST00000488321 RRP7BPQ9NSQ0 103 aa23.07■■□□□ 1.28
TRIM54-204ENST00000488321 SHANK2Q9UPX8 1470 aa23.06■■□□□ 1.28
TRIM54-204ENST00000488321 KIF15Q9NS87 1388 aa23.04■■□□□ 1.28
TRIM54-204ENST00000488321 DNMT1P26358 1616 aaKnown RBP23.03■■□□□ 1.28
TRIM54-204ENST00000488321 WASHC2CQ9Y4E1 1318 aa23.03■■□□□ 1.28
TRIM54-204ENST00000488321 UHRF1BP1Q6BDS2 1440 aa23.02■■□□□ 1.28
TRIM54-204ENST00000488321 C3P01024 1663 aa23.01■■□□□ 1.27
TRIM54-204ENST00000488321 ANKRD30AQ9BXX3 1397 aa23.01■■□□□ 1.27
TRIM54-204ENST00000488321 DUOX2Q9NRD8 1548 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms