RNA–Protein interactions for RNA: ENST00000487689.1

UBR3-211, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 3

Gene UBR3, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-211ENST00000487689 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.65□□□□□ -0.38
UBR3-211ENST00000487689 RIOK3O14730 519 aaKnown RBP12.65□□□□□ -0.38
UBR3-211ENST00000487689 ARSIQ5FYB1 569 aa12.65□□□□□ -0.38
UBR3-211ENST00000487689 ZFP91Q96JP5 570 aaPredicted RBP12.65□□□□□ -0.38
UBR3-211ENST00000487689 RNF25Q96BH1 459 aaPredicted RBP12.63□□□□□ -0.39
UBR3-211ENST00000487689 PTGER2P43116 358 aa12.61□□□□□ -0.39
UBR3-211ENST00000487689 ANKRD13DQ6ZTN6 518 aa12.61□□□□□ -0.39
UBR3-211ENST00000487689 VGFO15240 615 aaPredicted RBP12.6□□□□□ -0.39
UBR3-211ENST00000487689 KHSRPQ92945 711 aaKnown RBP eCLIP12.6□□□□□ -0.39
UBR3-211ENST00000487689 ZNF316A6NFI3 1004 aaPredicted RBP12.58□□□□□ -0.4
UBR3-211ENST00000487689 NLRP6P59044 892 aa12.52□□□□□ -0.41
UBR3-211ENST00000487689 LSM11P83369 360 aaKnown RBP eCLIP12.52□□□□□ -0.41
UBR3-211ENST00000487689 FBXO22Q8NEZ5 403 aa12.5□□□□□ -0.41
UBR3-211ENST00000487689 BCL11BQ9C0K0 894 aaPredicted RBP12.46□□□□□ -0.41
UBR3-211ENST00000487689 NUDT7P0C024 238 aa12.45□□□□□ -0.42
UBR3-211ENST00000487689 C2orf72A6NCS6 295 aa12.43□□□□□ -0.42
UBR3-211ENST00000487689 KIF3CO14782 793 aa12.43□□□□□ -0.42
UBR3-211ENST00000487689 STK24Q9Y6E0 443 aa12.42□□□□□ -0.42
UBR3-211ENST00000487689 PBX2P40425 430 aa12.41□□□□□ -0.42
UBR3-211ENST00000487689 MFRPQ9BY79 579 aa12.41□□□□□ -0.42
UBR3-211ENST00000487689 AXIN2Q9Y2T1 843 aa12.41□□□□□ -0.42
UBR3-211ENST00000487689 LHX6Q9UPM6 363 aa12.4□□□□□ -0.42
UBR3-211ENST00000487689 POTEEQ6S8J3 1075 aa12.39□□□□□ -0.43
UBR3-211ENST00000487689 TAOK2Q9UL54 1235 aa12.38□□□□□ -0.43
UBR3-211ENST00000487689 PCDHGA4Q9Y5G9 962 aa12.37□□□□□ -0.43
UBR3-211ENST00000487689 PLA2G2EQ9NZK7 142 aa12.35□□□□□ -0.43
UBR3-211ENST00000487689 STK25O00506 426 aa12.33□□□□□ -0.44
UBR3-211ENST00000487689 SLC34A2O95436 690 aa12.33□□□□□ -0.44
UBR3-211ENST00000487689 HCSTQ9UBK5 93 aa12.31□□□□□ -0.44
UBR3-211ENST00000487689 TMC2Q8TDI7 906 aa12.3□□□□□ -0.44
UBR3-211ENST00000487689 ADGRD1Q6QNK2 874 aa12.28□□□□□ -0.44
UBR3-211ENST00000487689 ARHGAP33O14559 1287 aa12.26□□□□□ -0.45
UBR3-211ENST00000487689 PSDA5PKW4 1024 aaPredicted RBP12.22□□□□□ -0.45
UBR3-211ENST00000487689 ECM2O94769 699 aaPredicted RBP12.2□□□□□ -0.46
UBR3-211ENST00000487689 DMRTA1Q5VZB9 504 aa12.19□□□□□ -0.46
UBR3-211ENST00000487689 PPP1R37O75864 691 aa12.18□□□□□ -0.46
UBR3-211ENST00000487689 PSEN2P49810 448 aa12.18□□□□□ -0.46
UBR3-211ENST00000487689 KDM4FA0A1W2PPD8 638 aa12.17□□□□□ -0.46
UBR3-211ENST00000487689 TK2O00142 265 aa12.17□□□□□ -0.46
UBR3-211ENST00000487689 HRO43593 1189 aa12.17□□□□□ -0.46
UBR3-211ENST00000487689 PTCD2Q8WV60 388 aaKnown RBP12.14□□□□□ -0.47
UBR3-211ENST00000487689 RGL2O15211 777 aa12.13□□□□□ -0.47
UBR3-211ENST00000487689 KCTD12Q96CX2 325 aaKnown RBP12.13□□□□□ -0.47
UBR3-211ENST00000487689 PPP4R3BQ5MIZ7 849 aa12.1□□□□□ -0.47
UBR3-211ENST00000487689 PLPP6Q8IY26 295 aa12.09□□□□□ -0.47
UBR3-211ENST00000487689 STAC3Q96MF2 364 aa12.09□□□□□ -0.47
UBR3-211ENST00000487689 FOXK1P85037 733 aa12.07□□□□□ -0.48
UBR3-211ENST00000487689 PKD2Q13563 968 aa12.05□□□□□ -0.48
UBR3-211ENST00000487689 KCNK17Q96T54 332 aa12.05□□□□□ -0.48
UBR3-211ENST00000487689 TBC1D12O60347 775 aa12.03□□□□□ -0.48
UBR3-211ENST00000487689 DSG2Q14126 1118 aa12.02□□□□□ -0.49
UBR3-211ENST00000487689 GPHNQ9NQX3 736 aaPredicted RBP12.02□□□□□ -0.49
UBR3-211ENST00000487689 KCNH8Q96L42 1107 aa12.01□□□□□ -0.49
UBR3-211ENST00000487689 PTPN5P54829 565 aa12□□□□□ -0.49
UBR3-211ENST00000487689 VPS9D1Q9Y2B5 631 aa11.98□□□□□ -0.49
UBR3-211ENST00000487689 ZNF454Q8N9F8 522 aa11.92□□□□□ -0.5
UBR3-211ENST00000487689 UPF1Q92900 1129 aaKnown RBP eCLIP11.92□□□□□ -0.5
UBR3-211ENST00000487689 OXER1Q8TDS5 423 aa11.91□□□□□ -0.5
UBR3-211ENST00000487689 RGS20O76081 388 aa11.89□□□□□ -0.51
UBR3-211ENST00000487689 IFFO2Q5TF58 517 aa11.89□□□□□ -0.51
UBR3-211ENST00000487689 SLC4A5Q9BY07 1137 aa11.89□□□□□ -0.51
UBR3-211ENST00000487689 BCL2L12Q9HB09 334 aa11.89□□□□□ -0.51
UBR3-211ENST00000487689 THSD4Q6ZMP0 1018 aa11.88□□□□□ -0.51
UBR3-211ENST00000487689 GOLGA8CPA6NN73 597 aa11.86□□□□□ -0.51
UBR3-211ENST00000487689 BHMG1C9JSJ3 638 aaPredicted RBP11.86□□□□□ -0.51
UBR3-211ENST00000487689 HS6ST3Q8IZP7 471 aa11.86□□□□□ -0.51
UBR3-211ENST00000487689 IRX2Q9BZI1 471 aaPredicted RBP11.86□□□□□ -0.51
UBR3-211ENST00000487689 A0A0G2JS52 829 aa11.85□□□□□ -0.51
UBR3-211ENST00000487689 PTPREP23469 700 aa11.84□□□□□ -0.51
UBR3-211ENST00000487689 WNT2BQ93097 391 aa11.84□□□□□ -0.51
UBR3-211ENST00000487689 FOSBP53539 338 aa11.83□□□□□ -0.52
UBR3-211ENST00000487689 ZBED2Q9BTP6 218 aa11.83□□□□□ -0.52
UBR3-211ENST00000487689 MRPL50Q8N5N7 158 aaKnown RBP11.82□□□□□ -0.52
UBR3-211ENST00000487689 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
UBR3-211ENST00000487689 CRISPLD2Q9H0B8 497 aa11.78□□□□□ -0.52
UBR3-211ENST00000487689 CHGAP10645 457 aaKnown RBP11.75□□□□□ -0.53
UBR3-211ENST00000487689 JPH4Q96JJ6 628 aa11.75□□□□□ -0.53
UBR3-211ENST00000487689 ADAM33Q9BZ11 813 aa11.75□□□□□ -0.53
UBR3-211ENST00000487689 NBPF3Q9H094 633 aa11.75□□□□□ -0.53
UBR3-211ENST00000487689 ANO8Q9HCE9 1232 aaPredicted RBP11.75□□□□□ -0.53
UBR3-211ENST00000487689 ZDHHC16Q969W1 377 aa11.74□□□□□ -0.53
UBR3-211ENST00000487689 EVI5O60447 810 aa11.73□□□□□ -0.53
UBR3-211ENST00000487689 NKX1-1Q15270 411 aaPredicted RBP11.72□□□□□ -0.53
UBR3-211ENST00000487689 NCKAP5LQ9HCH0 1330 aa11.69□□□□□ -0.54
UBR3-211ENST00000487689 PDE4AP27815 886 aa11.68□□□□□ -0.54
UBR3-211ENST00000487689 RYDENQ9NUL5 291 aaKnown RBP11.67□□□□□ -0.54
UBR3-211ENST00000487689 DCAF8L2P0C7V8 631 aa11.66□□□□□ -0.54
UBR3-211ENST00000487689 DNAJC5Q9H3Z4 198 aa11.66□□□□□ -0.54
UBR3-211ENST00000487689 ANKK1Q8NFD2 765 aa11.65□□□□□ -0.54
UBR3-211ENST00000487689 PPP1R3GB7ZBB8 358 aa11.64□□□□□ -0.55
UBR3-211ENST00000487689 ITGBL1O95965 494 aaPredicted RBP11.64□□□□□ -0.55
UBR3-211ENST00000487689 PROX2Q3B8N5 592 aa11.64□□□□□ -0.55
UBR3-211ENST00000487689 MAP3K9P80192 1104 aa11.63□□□□□ -0.55
UBR3-211ENST00000487689 RABGEF1Q9UJ41 708 aa11.63□□□□□ -0.55
UBR3-211ENST00000487689 BCAMP50895 628 aa11.62□□□□□ -0.55
UBR3-211ENST00000487689 COL9A1P20849 921 aa11.61□□□□□ -0.55
UBR3-211ENST00000487689 Q6ZNB5 142 aa11.6□□□□□ -0.55
UBR3-211ENST00000487689 LARP6Q9BRS8 491 aaKnown RBP11.6□□□□□ -0.55
UBR3-211ENST00000487689 PCDHGA10Q9Y5H3 936 aa11.6□□□□□ -0.55
UBR3-211ENST00000487689 DDX27Q96GQ7 796 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms