RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 GPATCH8Q9UKJ3 1502 aaKnown RBP10.49□□□□□ -0.73
PTPRE-209ENST00000487428 NCOA2Q15596 1464 aa10.49□□□□□ -0.73
PTPRE-209ENST00000487428 ZMYM4Q5VZL5 1548 aa10.48□□□□□ -0.73
PTPRE-209ENST00000487428 AKNAQ7Z591 1439 aa10.48□□□□□ -0.73
PTPRE-209ENST00000487428 MIA2Q96PC5 1412 aa10.47□□□□□ -0.73
PTPRE-209ENST00000487428 KIAA1107Q9UPP5 1409 aa10.47□□□□□ -0.73
PTPRE-209ENST00000487428 PLEKHH2Q8IVE3 1493 aa10.47□□□□□ -0.73
PTPRE-209ENST00000487428 ABCC1P33527 1531 aa10.47□□□□□ -0.73
PTPRE-209ENST00000487428 EFCAB2Q5VUJ9 269 aa10.46□□□□□ -0.73
PTPRE-209ENST00000487428 COL17A1Q9UMD9 1497 aaPredicted RBP10.46□□□□□ -0.74
PTPRE-209ENST00000487428 ARHGAP5Q13017 1502 aa10.46□□□□□ -0.74
PTPRE-209ENST00000487428 KDM5CP41229 1560 aa10.46□□□□□ -0.74
PTPRE-209ENST00000487428 FRMPD1Q5SYB0 1578 aa10.46□□□□□ -0.74
PTPRE-209ENST00000487428 MAGI2Q86UL8 1455 aa10.45□□□□□ -0.74
PTPRE-209ENST00000487428 APLP2Q06481 763 aa10.45□□□□□ -0.74
PTPRE-209ENST00000487428 SAMD9LQ8IVG5 1584 aa10.44□□□□□ -0.74
PTPRE-209ENST00000487428 DENND4BO75064 1496 aaPredicted RBP10.44□□□□□ -0.74
PTPRE-209ENST00000487428 ADGRL1O94910 1474 aa10.44□□□□□ -0.74
PTPRE-209ENST00000487428 CCNB3Q8WWL7 1395 aa10.44□□□□□ -0.74
PTPRE-209ENST00000487428 ZNF518AQ6AHZ1 1483 aa10.43□□□□□ -0.74
PTPRE-209ENST00000487428 MYOM3Q5VTT5 1437 aa10.43□□□□□ -0.74
PTPRE-209ENST00000487428 POGZQ7Z3K3 1410 aa10.42□□□□□ -0.74
PTPRE-209ENST00000487428 KANK4Q5T7N3 995 aaPredicted RBP10.42□□□□□ -0.74
PTPRE-209ENST00000487428 ARHGEF5Q12774 1597 aa10.42□□□□□ -0.74
PTPRE-209ENST00000487428 RSPH4AQ5TD94 716 aa10.41□□□□□ -0.74
PTPRE-209ENST00000487428 MLH3Q9UHC1 1453 aa10.41□□□□□ -0.74
PTPRE-209ENST00000487428 REREQ9P2R6 1566 aa10.4□□□□□ -0.74
PTPRE-209ENST00000487428 TCOF1Q13428 1488 aaKnown RBP10.4□□□□□ -0.74
PTPRE-209ENST00000487428 MBD5Q9P267 1494 aa10.4□□□□□ -0.74
PTPRE-209ENST00000487428 SCAPERQ9BY12 1400 aa10.4□□□□□ -0.75
PTPRE-209ENST00000487428 ARHGEF40Q8TER5 1519 aa10.39□□□□□ -0.75
PTPRE-209ENST00000487428 ARHGEF12Q9NZN5 1544 aa10.39□□□□□ -0.75
PTPRE-209ENST00000487428 CFDP1Q9UEE9 299 aaPredicted RBP10.39□□□□□ -0.75
PTPRE-209ENST00000487428 HECW2Q9P2P5 1572 aa10.39□□□□□ -0.75
PTPRE-209ENST00000487428 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTPRE-209ENST00000487428 KIDINS220Q9ULH0 1771 aa10.38□□□□□ -0.75
PTPRE-209ENST00000487428 RTEL1-TNFRSF6BF6WH68 1400 aa10.38□□□□□ -0.75
PTPRE-209ENST00000487428 INO80Q9ULG1 1556 aaPredicted RBP10.38□□□□□ -0.75
PTPRE-209ENST00000487428 MAST1Q9Y2H9 1570 aa10.38□□□□□ -0.75
PTPRE-209ENST00000487428 SYCP2Q9BX26 1530 aa10.38□□□□□ -0.75
PTPRE-209ENST00000487428 CAMSAP2Q08AD1 1489 aa10.37□□□□□ -0.75
PTPRE-209ENST00000487428 PTPN23Q9H3S7 1636 aa10.37□□□□□ -0.75
PTPRE-209ENST00000487428 FGD6Q6ZV73 1430 aa10.37□□□□□ -0.75
PTPRE-209ENST00000487428 CROCC2H7BZ55 1655 aa10.36□□□□□ -0.75
PTPRE-209ENST00000487428 ADGBQ8N7X0 1667 aa10.35□□□□□ -0.75
PTPRE-209ENST00000487428 ZFYVE16Q7Z3T8 1539 aa10.35□□□□□ -0.75
PTPRE-209ENST00000487428 DNMT1P26358 1616 aaKnown RBP10.35□□□□□ -0.75
PTPRE-209ENST00000487428 CCDC141Q6ZP82 1450 aa10.35□□□□□ -0.75
PTPRE-209ENST00000487428 SHANK2Q9UPX8 1470 aa10.35□□□□□ -0.75
PTPRE-209ENST00000487428 TRAPPC8Q9Y2L5 1435 aa10.34□□□□□ -0.75
PTPRE-209ENST00000487428 BCORL1Q5H9F3 1711 aa10.34□□□□□ -0.75
PTPRE-209ENST00000487428 AGLP35573 1532 aa10.33□□□□□ -0.76
PTPRE-209ENST00000487428 ATP7AQ04656 1500 aa10.33□□□□□ -0.76
PTPRE-209ENST00000487428 RAPGEF3O95398 923 aa10.33□□□□□ -0.76
PTPRE-209ENST00000487428 PLXNC1O60486 1568 aa10.33□□□□□ -0.76
PTPRE-209ENST00000487428 DIP2CQ9Y2E4 1556 aa10.33□□□□□ -0.76
PTPRE-209ENST00000487428 RRBP1Q9P2E9 1410 aaKnown RBP10.33□□□□□ -0.76
PTPRE-209ENST00000487428 ATP10AO60312 1499 aa10.32□□□□□ -0.76
PTPRE-209ENST00000487428 ABCA6Q8N139 1617 aa10.32□□□□□ -0.76
PTPRE-209ENST00000487428 C9orf84Q5VXU9 1444 aa10.3□□□□□ -0.76
PTPRE-209ENST00000487428 ADGRL2O95490 1459 aa10.3□□□□□ -0.76
PTPRE-209ENST00000487428 FAM135AQ9P2D6 1515 aa10.29□□□□□ -0.76
PTPRE-209ENST00000487428 AFAP1Q8N556 730 aa10.29□□□□□ -0.76
PTPRE-209ENST00000487428 ZNF644Q9H582 1327 aaPredicted RBP10.29□□□□□ -0.76
PTPRE-209ENST00000487428 EIF2AK4Q9P2K8 1649 aaKnown RBP10.29□□□□□ -0.76
PTPRE-209ENST00000487428 ADAMTSL3P82987 1691 aa10.28□□□□□ -0.76
PTPRE-209ENST00000487428 SIGLEC1Q9BZZ2 1709 aa10.28□□□□□ -0.76
PTPRE-209ENST00000487428 DAPK1P53355 1430 aa10.28□□□□□ -0.76
PTPRE-209ENST00000487428 YEATS2Q9ULM3 1422 aa10.28□□□□□ -0.76
PTPRE-209ENST00000487428 HNRNPMP52272 730 aaKnown RBP eCLIP10.28□□□□□ -0.76
PTPRE-209ENST00000487428 SPAG9O60271 1321 aaKnown RBP10.28□□□□□ -0.76
PTPRE-209ENST00000487428 ABCC5O15440 1437 aa10.27□□□□□ -0.77
PTPRE-209ENST00000487428 ZNF777Q9ULD5 760 aaPredicted RBP10.27□□□□□ -0.77
PTPRE-209ENST00000487428 A2MP01023 1474 aa10.25□□□□□ -0.77
PTPRE-209ENST00000487428 TSPY4P0CV99 314 aa10.25□□□□□ -0.77
PTPRE-209ENST00000487428 TSPY10P0CW01 314 aa10.25□□□□□ -0.77
PTPRE-209ENST00000487428 ROCK1Q13464 1354 aa10.25□□□□□ -0.77
PTPRE-209ENST00000487428 DUOX2Q9NRD8 1548 aa10.24□□□□□ -0.77
PTPRE-209ENST00000487428 PPP6R1Q9UPN7 881 aa10.24□□□□□ -0.77
PTPRE-209ENST00000487428 RNF17Q9BXT8 1623 aaKnown RBP10.24□□□□□ -0.77
PTPRE-209ENST00000487428 SETD1BQ9UPS6 1966 aaKnown RBP10.24□□□□□ -0.77
PTPRE-209ENST00000487428 MROH2AA6NES4 1674 aa10.24□□□□□ -0.77
PTPRE-209ENST00000487428 DHX29Q7Z478 1369 aaKnown RBP10.24□□□□□ -0.77
PTPRE-209ENST00000487428 NCOA1Q15788 1441 aa10.24□□□□□ -0.77
PTPRE-209ENST00000487428 ERBINQ96RT1 1412 aa10.23□□□□□ -0.77
PTPRE-209ENST00000487428 DEPDC5O75140 1603 aa10.22□□□□□ -0.77
PTPRE-209ENST00000487428 FER1L4A9Z1Z3 1794 aa10.22□□□□□ -0.77
PTPRE-209ENST00000487428 ANKRD30AQ9BXX3 1397 aa10.21□□□□□ -0.78
PTPRE-209ENST00000487428 ZC3H13Q5T200 1668 aaKnown RBP10.21□□□□□ -0.78
PTPRE-209ENST00000487428 KDM5DQ9BY66 1539 aa10.2□□□□□ -0.78
PTPRE-209ENST00000487428 GCC2Q8IWJ2 1684 aa10.19□□□□□ -0.78
PTPRE-209ENST00000487428 CNTLNQ9NXG0 1405 aa10.19□□□□□ -0.78
PTPRE-209ENST00000487428 PRDM15P57071 1507 aaPredicted RBP10.18□□□□□ -0.78
PTPRE-209ENST00000487428 PTPRKQ15262 1439 aa10.18□□□□□ -0.78
PTPRE-209ENST00000487428 MROH1Q8NDA8 1641 aa10.18□□□□□ -0.78
PTPRE-209ENST00000487428 MADDQ8WXG6 1647 aa10.18□□□□□ -0.78
PTPRE-209ENST00000487428 VWDEQ8N2E2 1590 aa10.18□□□□□ -0.78
PTPRE-209ENST00000487428 KIF15Q9NS87 1388 aa10.17□□□□□ -0.78
PTPRE-209ENST00000487428 ACIN1Q9UKV3 1341 aaKnown RBP10.16□□□□□ -0.78
PTPRE-209ENST00000487428 UNC13BO14795 1591 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms