RNA–Protein interactions for RNA: ENST00000487222.5

EPHB4-206, Transcript of EPH receptor B4, humanhuman

TSL 1 (best)

Gene EPHB4, Length 5,058 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB4-206ENST00000487222 PKD2Q13563 968 aa18.81■□□□□ 0.6
EPHB4-206ENST00000487222 L1TD1Q5T7N2 865 aaKnown RBP18.8■□□□□ 0.6
EPHB4-206ENST00000487222 MORC1Q86VD1 984 aa18.8■□□□□ 0.6
EPHB4-206ENST00000487222 HAP1P54257 671 aaPredicted RBP18.78■□□□□ 0.6
EPHB4-206ENST00000487222 PLCB2Q00722 1185 aa18.78■□□□□ 0.6
EPHB4-206ENST00000487222 RCAN3Q9UKA8 241 aa18.78■□□□□ 0.6
EPHB4-206ENST00000487222 RALBP1Q15311 655 aa18.78■□□□□ 0.6
EPHB4-206ENST00000487222 WIZO95785 1651 aa18.77■□□□□ 0.6
EPHB4-206ENST00000487222 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.59
EPHB4-206ENST00000487222 CFAP44Q96MT7 982 aa18.77■□□□□ 0.59
EPHB4-206ENST00000487222 OS9Q13438 667 aaPredicted RBP18.76■□□□□ 0.59
EPHB4-206ENST00000487222 TCERG1O14776 1098 aaKnown RBP18.76■□□□□ 0.59
EPHB4-206ENST00000487222 MPHOSPH9Q99550 1183 aa18.75■□□□□ 0.59
EPHB4-206ENST00000487222 KCNJ4P48050 445 aa18.74■□□□□ 0.59
EPHB4-206ENST00000487222 HDGFP51858 240 aaKnown RBP18.74■□□□□ 0.59
EPHB4-206ENST00000487222 FOXD1Q16676 465 aa18.74■□□□□ 0.59
EPHB4-206ENST00000487222 FGD1P98174 961 aa18.73■□□□□ 0.59
EPHB4-206ENST00000487222 SRPK2P78362 688 aaKnown RBP18.73■□□□□ 0.59
EPHB4-206ENST00000487222 EFCAB2Q5VUJ9 269 aa18.72■□□□□ 0.59
EPHB4-206ENST00000487222 TSHZ2Q9NRE2 1034 aa18.72■□□□□ 0.59
EPHB4-206ENST00000487222 RAPGEF2Q9Y4G8 1499 aa18.72■□□□□ 0.59
EPHB4-206ENST00000487222 GOLGA6L6A8MZA4 724 aa18.71■□□□□ 0.59
EPHB4-206ENST00000487222 GGT6Q6P531 493 aa18.71■□□□□ 0.59
EPHB4-206ENST00000487222 IPO8O15397 1037 aaKnown RBP18.71■□□□□ 0.59
EPHB4-206ENST00000487222 LMOD2Q6P5Q4 547 aa18.71■□□□□ 0.59
EPHB4-206ENST00000487222 ANKRD30AQ9BXX3 1397 aa18.71■□□□□ 0.59
EPHB4-206ENST00000487222 MCCP23508 829 aa18.7■□□□□ 0.58
EPHB4-206ENST00000487222 NRDCO43847 1150 aa18.7■□□□□ 0.58
EPHB4-206ENST00000487222 NUP155O75694 1391 aa18.7■□□□□ 0.58
EPHB4-206ENST00000487222 GOLGA6L4A6NEF3 574 aa18.69■□□□□ 0.58
EPHB4-206ENST00000487222 ROCK2O75116 1388 aaKnown RBP18.68■□□□□ 0.58
EPHB4-206ENST00000487222 MLECQ14165 292 aa18.68■□□□□ 0.58
EPHB4-206ENST00000487222 ATAD2BQ9ULI0 1458 aa18.67■□□□□ 0.58
EPHB4-206ENST00000487222 RWDD1Q9H446 243 aaPredicted RBP18.67■□□□□ 0.58
EPHB4-206ENST00000487222 MSNP26038 577 aaKnown RBP18.67■□□□□ 0.58
EPHB4-206ENST00000487222 SPRYD3Q8NCJ5 442 aa18.66■□□□□ 0.58
EPHB4-206ENST00000487222 FHOD3Q2V2M9 1422 aa18.65■□□□□ 0.58
EPHB4-206ENST00000487222 CHAF1AQ13111 956 aaPredicted RBP18.64■□□□□ 0.57
EPHB4-206ENST00000487222 L3MBTL2Q969R5 705 aa18.63■□□□□ 0.57
EPHB4-206ENST00000487222 GBP4Q96PP9 640 aa18.63■□□□□ 0.57
EPHB4-206ENST00000487222 SAFB2Q14151 953 aaKnown RBP eCLIP18.63■□□□□ 0.57
EPHB4-206ENST00000487222 PTMSP20962 102 aa18.63■□□□□ 0.57
EPHB4-206ENST00000487222 PDE3BQ13370 1112 aa18.62■□□□□ 0.57
EPHB4-206ENST00000487222 U2AF1L5P0DN76 240 aaPredicted RBP18.62■□□□□ 0.57
EPHB4-206ENST00000487222 U2AF1Q01081 240 aaKnown RBP eCLIP18.62■□□□□ 0.57
EPHB4-206ENST00000487222 CALD1Q05682 793 aaKnown RBP18.62■□□□□ 0.57
EPHB4-206ENST00000487222 HDGFL2Q7Z4V5 671 aaPredicted RBP18.62■□□□□ 0.57
EPHB4-206ENST00000487222 IPO9Q96P70 1041 aaKnown RBP18.62■□□□□ 0.57
EPHB4-206ENST00000487222 NLRP13Q86W25 1043 aa18.61■□□□□ 0.57
EPHB4-206ENST00000487222 NAP1L2Q9ULW6 460 aaPredicted RBP18.61■□□□□ 0.57
EPHB4-206ENST00000487222 RSPH4AQ5TD94 716 aa18.6■□□□□ 0.57
EPHB4-206ENST00000487222 RTF1Q92541 710 aaKnown RBP18.6■□□□□ 0.57
EPHB4-206ENST00000487222 PMFBP1Q8TBY8 1022 aa18.59■□□□□ 0.57
EPHB4-206ENST00000487222 GOLGA2Q08379 1002 aa18.58■□□□□ 0.57
EPHB4-206ENST00000487222 CCDC18Q5T9S5 1454 aa18.58■□□□□ 0.57
EPHB4-206ENST00000487222 SLKQ9H2G2 1235 aaPredicted RBP18.58■□□□□ 0.56
EPHB4-206ENST00000487222 ITPRIPQ8IWB1 547 aa18.58■□□□□ 0.56
EPHB4-206ENST00000487222 STK26Q9P289 416 aa18.58■□□□□ 0.56
EPHB4-206ENST00000487222 SMARCA4P51532 1647 aa18.57■□□□□ 0.56
EPHB4-206ENST00000487222 TAOK2Q9UL54 1235 aa18.57■□□□□ 0.56
EPHB4-206ENST00000487222 SOX12O15370 315 aa18.56■□□□□ 0.56
EPHB4-206ENST00000487222 JPH4Q96JJ6 628 aa18.56■□□□□ 0.56
EPHB4-206ENST00000487222 TRHP20396 242 aaPredicted RBP18.55■□□□□ 0.56
EPHB4-206ENST00000487222 HNRNPMP52272 730 aaKnown RBP eCLIP18.55■□□□□ 0.56
EPHB4-206ENST00000487222 KIF3BO15066 747 aa18.55■□□□□ 0.56
EPHB4-206ENST00000487222 EIF3AQ14152 1382 aaKnown RBP18.55■□□□□ 0.56
EPHB4-206ENST00000487222 KIAA1211Q6ZU35 1233 aa18.54■□□□□ 0.56
EPHB4-206ENST00000487222 DHX57Q6P158 1386 aaKnown RBP18.53■□□□□ 0.56
EPHB4-206ENST00000487222 APBB1O00213 710 aa18.53■□□□□ 0.56
EPHB4-206ENST00000487222 PHLDB1Q86UU1 1377 aa18.52■□□□□ 0.56
EPHB4-206ENST00000487222 SPAG9O60271 1321 aaKnown RBP18.51■□□□□ 0.55
EPHB4-206ENST00000487222 DRC7Q8IY82 874 aa18.51■□□□□ 0.55
EPHB4-206ENST00000487222 GZF1Q9H116 711 aaPredicted RBP18.51■□□□□ 0.55
EPHB4-206ENST00000487222 SMC4Q9NTJ3 1288 aa18.5■□□□□ 0.55
EPHB4-206ENST00000487222 RUSC2Q8N2Y8 1516 aa18.49■□□□□ 0.55
EPHB4-206ENST00000487222 CENPJQ9HC77 1338 aaPredicted RBP18.48■□□□□ 0.55
EPHB4-206ENST00000487222 KIF15Q9NS87 1388 aa18.48■□□□□ 0.55
EPHB4-206ENST00000487222 MFAP1P55081 439 aaKnown RBP18.48■□□□□ 0.55
EPHB4-206ENST00000487222 FANCD2Q9BXW9 1451 aa18.48■□□□□ 0.55
EPHB4-206ENST00000487222 KIAA2012Q0VF49 1180 aa18.47■□□□□ 0.55
EPHB4-206ENST00000487222 CHMP4AQ9BY43 222 aa18.47■□□□□ 0.55
EPHB4-206ENST00000487222 GOLGA6L3A6NEY3 463 aa18.47■□□□□ 0.55
EPHB4-206ENST00000487222 SYAP1Q96A49 352 aaPredicted RBP18.47■□□□□ 0.55
EPHB4-206ENST00000487222 MYBBP1AQ9BQG0 1328 aaKnown RBP18.46■□□□□ 0.55
EPHB4-206ENST00000487222 NPHP1O15259 732 aa18.46■□□□□ 0.55
EPHB4-206ENST00000487222 TERF2IPQ9NYB0 399 aa18.45■□□□□ 0.54
EPHB4-206ENST00000487222 CLUAP1Q96AJ1 413 aa18.44■□□□□ 0.54
EPHB4-206ENST00000487222 HMMRO75330 724 aa18.43■□□□□ 0.54
EPHB4-206ENST00000487222 CCDC146Q8IYE0 955 aa18.43■□□□□ 0.54
EPHB4-206ENST00000487222 PRKRIP1Q9H875 184 aaPredicted RBP18.43■□□□□ 0.54
EPHB4-206ENST00000487222 STK31Q9BXU1 1019 aa18.43■□□□□ 0.54
EPHB4-206ENST00000487222 USP35Q9P2H5 1018 aa18.43■□□□□ 0.54
EPHB4-206ENST00000487222 TULP1O00294 542 aaPredicted RBP18.42■□□□□ 0.54
EPHB4-206ENST00000487222 HTATSF1O43719 755 aaKnown RBP18.42■□□□□ 0.54
EPHB4-206ENST00000487222 WASHC2CQ9Y4E1 1318 aa18.41■□□□□ 0.54
EPHB4-206ENST00000487222 ZBED9Q6R2W3 1325 aa18.41■□□□□ 0.54
EPHB4-206ENST00000487222 ST20-MTHFSA0A0A6YYL1 179 aa18.4■□□□□ 0.54
EPHB4-206ENST00000487222 GNL2Q13823 731 aaKnown RBP18.4■□□□□ 0.54
EPHB4-206ENST00000487222 CENPQQ7L2Z9 268 aaPredicted RBP18.4■□□□□ 0.54
EPHB4-206ENST00000487222 HDAC5Q9UQL6 1122 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms