RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RCAN3Q9UKA8 241 aa21.04■□□□□ 0.96
COL7A1-210ENST00000487017 MORC1Q86VD1 984 aa21.04■□□□□ 0.96
COL7A1-210ENST00000487017 RALBP1Q15311 655 aa21.03■□□□□ 0.96
COL7A1-210ENST00000487017 PLCB2Q00722 1185 aa21.02■□□□□ 0.95
COL7A1-210ENST00000487017 FMN1Q68DA7 1419 aa21.01■□□□□ 0.95
COL7A1-210ENST00000487017 TCERG1O14776 1098 aaKnown RBP21.01■□□□□ 0.95
COL7A1-210ENST00000487017 ERCC6Q03468 1493 aa21■□□□□ 0.95
COL7A1-210ENST00000487017 ARID4BQ4LE39 1312 aaPredicted RBP20.99■□□□□ 0.95
COL7A1-210ENST00000487017 ROCK2O75116 1388 aaKnown RBP20.98■□□□□ 0.95
COL7A1-210ENST00000487017 OS9Q13438 667 aaPredicted RBP20.97■□□□□ 0.95
COL7A1-210ENST00000487017 TOP2AP11388 1531 aaKnown RBP20.96■□□□□ 0.95
COL7A1-210ENST00000487017 SMARCA2P51531 1590 aa20.95■□□□□ 0.95
COL7A1-210ENST00000487017 SPRYD3Q8NCJ5 442 aa20.95■□□□□ 0.94
COL7A1-210ENST00000487017 SRPK2P78362 688 aaKnown RBP20.94■□□□□ 0.94
COL7A1-210ENST00000487017 CFAP44Q96MT7 982 aa20.94■□□□□ 0.94
COL7A1-210ENST00000487017 LMOD2Q6P5Q4 547 aa20.93■□□□□ 0.94
COL7A1-210ENST00000487017 WIZO95785 1651 aa20.92■□□□□ 0.94
COL7A1-210ENST00000487017 KCNJ4P48050 445 aa20.91■□□□□ 0.94
COL7A1-210ENST00000487017 NUP155O75694 1391 aa20.91■□□□□ 0.94
COL7A1-210ENST00000487017 GOLGA6L6A8MZA4 724 aa20.91■□□□□ 0.94
COL7A1-210ENST00000487017 MCCP23508 829 aa20.9■□□□□ 0.94
COL7A1-210ENST00000487017 ANKRD30AQ9BXX3 1397 aa20.9■□□□□ 0.94
COL7A1-210ENST00000487017 IPO8O15397 1037 aaKnown RBP20.9■□□□□ 0.94
COL7A1-210ENST00000487017 FGD1P98174 961 aa20.89■□□□□ 0.94
COL7A1-210ENST00000487017 L3MBTL2Q969R5 705 aa20.89■□□□□ 0.93
COL7A1-210ENST00000487017 MSNP26038 577 aaKnown RBP20.89■□□□□ 0.93
COL7A1-210ENST00000487017 RWDD1Q9H446 243 aaPredicted RBP20.88■□□□□ 0.93
COL7A1-210ENST00000487017 IPO9Q96P70 1041 aaKnown RBP20.88■□□□□ 0.93
COL7A1-210ENST00000487017 NAP1L2Q9ULW6 460 aaPredicted RBP20.88■□□□□ 0.93
COL7A1-210ENST00000487017 DHX57Q6P158 1386 aaKnown RBP20.87■□□□□ 0.93
COL7A1-210ENST00000487017 NPHP1O15259 732 aa20.87■□□□□ 0.93
COL7A1-210ENST00000487017 CARMIL2Q6F5E8 1435 aa20.86■□□□□ 0.93
COL7A1-210ENST00000487017 GOLGA6L4A6NEF3 574 aa20.85■□□□□ 0.93
COL7A1-210ENST00000487017 SAFB2Q14151 953 aaKnown RBP eCLIP20.85■□□□□ 0.93
COL7A1-210ENST00000487017 RAPGEF2Q9Y4G8 1499 aa20.84■□□□□ 0.93
COL7A1-210ENST00000487017 PTMSP20962 102 aa20.83■□□□□ 0.93
COL7A1-210ENST00000487017 GBP4Q96PP9 640 aa20.83■□□□□ 0.93
COL7A1-210ENST00000487017 NRDCO43847 1150 aa20.83■□□□□ 0.92
COL7A1-210ENST00000487017 PDE3BQ13370 1112 aa20.83■□□□□ 0.92
COL7A1-210ENST00000487017 U2AF1L5P0DN76 240 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-210ENST00000487017 U2AF1Q01081 240 aaKnown RBP eCLIP20.82■□□□□ 0.92
COL7A1-210ENST00000487017 PMFBP1Q8TBY8 1022 aa20.82■□□□□ 0.92
COL7A1-210ENST00000487017 HDGFL2Q7Z4V5 671 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-210ENST00000487017 CHAF1AQ13111 956 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-210ENST00000487017 NLRP13Q86W25 1043 aa20.81■□□□□ 0.92
COL7A1-210ENST00000487017 ITPRIPQ8IWB1 547 aa20.81■□□□□ 0.92
COL7A1-210ENST00000487017 FHOD3Q2V2M9 1422 aa20.81■□□□□ 0.92
COL7A1-210ENST00000487017 SLKQ9H2G2 1235 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-210ENST00000487017 EIF3AQ14152 1382 aaKnown RBP20.8■□□□□ 0.92
COL7A1-210ENST00000487017 GOLGA2Q08379 1002 aa20.8■□□□□ 0.92
COL7A1-210ENST00000487017 HDGFP51858 240 aaKnown RBP20.8■□□□□ 0.92
COL7A1-210ENST00000487017 CALD1Q05682 793 aaKnown RBP20.79■□□□□ 0.92
COL7A1-210ENST00000487017 TDRD9Q8NDG6 1382 aaKnown RBP20.79■□□□□ 0.92
COL7A1-210ENST00000487017 RTF1Q92541 710 aaKnown RBP20.78■□□□□ 0.92
COL7A1-210ENST00000487017 SOX12O15370 315 aa20.76■□□□□ 0.91
COL7A1-210ENST00000487017 STK26Q9P289 416 aa20.76■□□□□ 0.91
COL7A1-210ENST00000487017 GGT6Q6P531 493 aa20.76■□□□□ 0.91
COL7A1-210ENST00000487017 NCBP3Q53F19 620 aaKnown RBP20.75■□□□□ 0.91
COL7A1-210ENST00000487017 PHLDB1Q86UU1 1377 aa20.75■□□□□ 0.91
COL7A1-210ENST00000487017 KIF15Q9NS87 1388 aa20.75■□□□□ 0.91
COL7A1-210ENST00000487017 PDS5BQ9NTI5 1447 aa20.74■□□□□ 0.91
COL7A1-210ENST00000487017 APBB1O00213 710 aa20.74■□□□□ 0.91
COL7A1-210ENST00000487017 GZF1Q9H116 711 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-210ENST00000487017 CCDC18Q5T9S5 1454 aa20.73■□□□□ 0.91
COL7A1-210ENST00000487017 MYBBP1AQ9BQG0 1328 aaKnown RBP20.71■□□□□ 0.91
COL7A1-210ENST00000487017 MFAP1P55081 439 aaKnown RBP20.71■□□□□ 0.91
COL7A1-210ENST00000487017 EFCAB2Q5VUJ9 269 aa20.71■□□□□ 0.91
COL7A1-210ENST00000487017 DRC7Q8IY82 874 aa20.7■□□□□ 0.9
COL7A1-210ENST00000487017 CENPJQ9HC77 1338 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-210ENST00000487017 SMC4Q9NTJ3 1288 aa20.7■□□□□ 0.9
COL7A1-210ENST00000487017 KIAA1211Q6ZU35 1233 aa20.7■□□□□ 0.9
COL7A1-210ENST00000487017 CCDC146Q8IYE0 955 aa20.69■□□□□ 0.9
COL7A1-210ENST00000487017 CLSTN1O94985 981 aa20.69■□□□□ 0.9
COL7A1-210ENST00000487017 GOLGA6L3A6NEY3 463 aa20.68■□□□□ 0.9
COL7A1-210ENST00000487017 RUSC2Q8N2Y8 1516 aa20.68■□□□□ 0.9
COL7A1-210ENST00000487017 HNRNPMP52272 730 aaKnown RBP eCLIP20.66■□□□□ 0.9
COL7A1-210ENST00000487017 MLECQ14165 292 aa20.66■□□□□ 0.9
COL7A1-210ENST00000487017 PRKRIP1Q9H875 184 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-210ENST00000487017 AMER1Q5JTC6 1135 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-210ENST00000487017 ZBED9Q6R2W3 1325 aa20.66■□□□□ 0.9
COL7A1-210ENST00000487017 RSPH4AQ5TD94 716 aa20.65■□□□□ 0.9
COL7A1-210ENST00000487017 CLUAP1Q96AJ1 413 aa20.64■□□□□ 0.89
COL7A1-210ENST00000487017 SYAP1Q96A49 352 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-210ENST00000487017 KIAA2012Q0VF49 1180 aa20.63■□□□□ 0.89
COL7A1-210ENST00000487017 USP35Q9P2H5 1018 aa20.62■□□□□ 0.89
COL7A1-210ENST00000487017 ST20-MTHFSA0A0A6YYL1 179 aa20.62■□□□□ 0.89
COL7A1-210ENST00000487017 ISY1Q9ULR0 285 aaKnown RBP20.62■□□□□ 0.89
COL7A1-210ENST00000487017 CENPQQ7L2Z9 268 aaPredicted RBP20.61■□□□□ 0.89
COL7A1-210ENST00000487017 CADPSQ9ULU8 1353 aa20.61■□□□□ 0.89
COL7A1-210ENST00000487017 TERF2IPQ9NYB0 399 aa20.61■□□□□ 0.89
COL7A1-210ENST00000487017 PDE4AP27815 886 aa20.6■□□□□ 0.89
COL7A1-210ENST00000487017 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.6■□□□□ 0.89
COL7A1-210ENST00000487017 KIF3BO15066 747 aa20.59■□□□□ 0.89
COL7A1-210ENST00000487017 RRP1P56182 461 aaKnown RBP20.59■□□□□ 0.89
COL7A1-210ENST00000487017 PANK3Q9H999 370 aa20.58■□□□□ 0.88
COL7A1-210ENST00000487017 SMARCA4P51532 1647 aa20.58■□□□□ 0.88
COL7A1-210ENST00000487017 HMMRO75330 724 aa20.58■□□□□ 0.88
COL7A1-210ENST00000487017 STK31Q9BXU1 1019 aa20.58■□□□□ 0.88
COL7A1-210ENST00000487017 FAM161AQ3B820 660 aa20.57■□□□□ 0.88
COL7A1-210ENST00000487017 SPAG9O60271 1321 aaKnown RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms