RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 CDK13Q14004 1512 aaKnown RBP14.19□□□□□ -0.14
COL12A1-208ENST00000486533 ARAP3Q8WWN8 1544 aa14.19□□□□□ -0.14
COL12A1-208ENST00000486533 APLP2Q06481 763 aa14.17□□□□□ -0.14
COL12A1-208ENST00000486533 PHLDB1Q86UU1 1377 aa14.17□□□□□ -0.14
COL12A1-208ENST00000486533 SLC4A1APQ9BWU0 796 aaKnown RBP14.17□□□□□ -0.14
COL12A1-208ENST00000486533 HECW1Q76N89 1606 aa14.16□□□□□ -0.14
COL12A1-208ENST00000486533 NEO1Q92859 1461 aa14.16□□□□□ -0.14
COL12A1-208ENST00000486533 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.14□□□□□ -0.15
COL12A1-208ENST00000486533 TTC37Q6PGP7 1564 aa14.14□□□□□ -0.15
COL12A1-208ENST00000486533 RAPGEF3O95398 923 aa14.13□□□□□ -0.15
COL12A1-208ENST00000486533 SAMD1Q6SPF0 538 aaPredicted RBP14.13□□□□□ -0.15
COL12A1-208ENST00000486533 FANCAO15360 1455 aa14.11□□□□□ -0.15
COL12A1-208ENST00000486533 CFAP74Q9C0B2 1584 aa14.11□□□□□ -0.15
COL12A1-208ENST00000486533 PCGF6Q9BYE7 350 aa14.1□□□□□ -0.15
COL12A1-208ENST00000486533 ZNF219Q9P2Y4 722 aaPredicted RBP14.09□□□□□ -0.15
COL12A1-208ENST00000486533 CDK11AQ9UQ88 783 aaPredicted RBP14.09□□□□□ -0.15
COL12A1-208ENST00000486533 FRMPD1Q5SYB0 1578 aa14.09□□□□□ -0.15
COL12A1-208ENST00000486533 AKNAQ7Z591 1439 aa14.09□□□□□ -0.15
COL12A1-208ENST00000486533 MYCNP04198 464 aaPredicted RBP14.08□□□□□ -0.16
COL12A1-208ENST00000486533 LRRIQ1Q96JM4 1722 aa14.07□□□□□ -0.16
COL12A1-208ENST00000486533 DENND4BO75064 1496 aaPredicted RBP14.07□□□□□ -0.16
COL12A1-208ENST00000486533 PCF11O94913 1555 aaKnown RBP14.06□□□□□ -0.16
COL12A1-208ENST00000486533 KIF14Q15058 1648 aa14.06□□□□□ -0.16
COL12A1-208ENST00000486533 RICTORQ6R327 1708 aa14.06□□□□□ -0.16
COL12A1-208ENST00000486533 TRIM26Q12899 539 aaPredicted RBP14.05□□□□□ -0.16
COL12A1-208ENST00000486533 MYO5CQ9NQX4 1742 aa14.05□□□□□ -0.16
COL12A1-208ENST00000486533 PLCH2O75038 1416 aa14.04□□□□□ -0.16
COL12A1-208ENST00000486533 CLIP1P30622 1438 aa14.04□□□□□ -0.16
COL12A1-208ENST00000486533 TROQ12816 1431 aaPredicted RBP14.04□□□□□ -0.16
COL12A1-208ENST00000486533 CASKIN1Q8WXD9 1431 aa14.04□□□□□ -0.16
COL12A1-208ENST00000486533 CCDC18Q5T9S5 1454 aa14.03□□□□□ -0.16
COL12A1-208ENST00000486533 ARID4BQ4LE39 1312 aaPredicted RBP14.03□□□□□ -0.16
COL12A1-208ENST00000486533 ARHGEF40Q8TER5 1519 aa14.02□□□□□ -0.16
COL12A1-208ENST00000486533 FYCO1Q9BQS8 1478 aa14.01□□□□□ -0.17
COL12A1-208ENST00000486533 EFCAB2Q5VUJ9 269 aa14□□□□□ -0.17
COL12A1-208ENST00000486533 ZMYM4Q5VZL5 1548 aa14□□□□□ -0.17
COL12A1-208ENST00000486533 SCAPERQ9BY12 1400 aa14□□□□□ -0.17
COL12A1-208ENST00000486533 ARHGAP5Q13017 1502 aa14□□□□□ -0.17
COL12A1-208ENST00000486533 POGZQ7Z3K3 1410 aa13.99□□□□□ -0.17
COL12A1-208ENST00000486533 ZFYVE16Q7Z3T8 1539 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 ADAMTSL3P82987 1691 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 LOC105371045A0A1W2PR82 267 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 FOXD4L1Q9NU39 408 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 HECW2Q9P2P5 1572 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 BCORL1Q5H9F3 1711 aa13.98□□□□□ -0.17
COL12A1-208ENST00000486533 ZEB1P37275 1124 aaPredicted RBP13.97□□□□□ -0.17
COL12A1-208ENST00000486533 YEATS2Q9ULM3 1422 aa13.96□□□□□ -0.17
COL12A1-208ENST00000486533 ABCB7O75027 752 aa13.96□□□□□ -0.17
COL12A1-208ENST00000486533 MAGI2Q86UL8 1455 aa13.96□□□□□ -0.17
COL12A1-208ENST00000486533 MADDQ8WXG6 1647 aa13.95□□□□□ -0.18
COL12A1-208ENST00000486533 CDC42BPBQ9Y5S2 1711 aa13.95□□□□□ -0.18
COL12A1-208ENST00000486533 PTPRMP28827 1452 aa13.95□□□□□ -0.18
COL12A1-208ENST00000486533 PREX2Q70Z35 1606 aa13.94□□□□□ -0.18
COL12A1-208ENST00000486533 ZNF518AQ6AHZ1 1483 aa13.93□□□□□ -0.18
COL12A1-208ENST00000486533 SIGLEC1Q9BZZ2 1709 aa13.92□□□□□ -0.18
COL12A1-208ENST00000486533 CEP162Q5TB80 1403 aa13.91□□□□□ -0.18
COL12A1-208ENST00000486533 CDC42BPAQ5VT25 1732 aa13.91□□□□□ -0.18
COL12A1-208ENST00000486533 RIMS1Q86UR5 1692 aaKnown RBP13.91□□□□□ -0.18
COL12A1-208ENST00000486533 MYT1LQ9UL68 1186 aa13.91□□□□□ -0.18
COL12A1-208ENST00000486533 MLECQ14165 292 aa13.9□□□□□ -0.18
COL12A1-208ENST00000486533 AFAP1Q8N556 730 aa13.9□□□□□ -0.18
COL12A1-208ENST00000486533 KDM5CP41229 1560 aa13.89□□□□□ -0.19
COL12A1-208ENST00000486533 ATP10AO60312 1499 aa13.89□□□□□ -0.19
COL12A1-208ENST00000486533 C9orf84Q5VXU9 1444 aa13.89□□□□□ -0.19
COL12A1-208ENST00000486533 ABCC1P33527 1531 aa13.88□□□□□ -0.19
COL12A1-208ENST00000486533 MTUS2Q5JR59 1369 aa13.87□□□□□ -0.19
COL12A1-208ENST00000486533 ITSN2Q9NZM3 1697 aa13.87□□□□□ -0.19
COL12A1-208ENST00000486533 ZNF777Q9ULD5 760 aaPredicted RBP13.87□□□□□ -0.19
COL12A1-208ENST00000486533 FER1L4A9Z1Z3 1794 aa13.86□□□□□ -0.19
COL12A1-208ENST00000486533 ARHGEF12Q9NZN5 1544 aa13.85□□□□□ -0.19
COL12A1-208ENST00000486533 TRAPPC8Q9Y2L5 1435 aa13.85□□□□□ -0.19
COL12A1-208ENST00000486533 GPATCH8Q9UKJ3 1502 aaKnown RBP13.85□□□□□ -0.19
COL12A1-208ENST00000486533 DIP2CQ9Y2E4 1556 aa13.84□□□□□ -0.19
COL12A1-208ENST00000486533 CCNB3Q8WWL7 1395 aa13.83□□□□□ -0.19
COL12A1-208ENST00000486533 MLH3Q9UHC1 1453 aa13.83□□□□□ -0.19
COL12A1-208ENST00000486533 SAMD9LQ8IVG5 1584 aa13.83□□□□□ -0.19
COL12A1-208ENST00000486533 ABCA6Q8N139 1617 aa13.83□□□□□ -0.19
COL12A1-208ENST00000486533 EHBP1L1Q8N3D4 1523 aa13.82□□□□□ -0.2
COL12A1-208ENST00000486533 SYCP2Q9BX26 1530 aa13.82□□□□□ -0.2
COL12A1-208ENST00000486533 ZBTB22O15209 634 aa13.82□□□□□ -0.2
COL12A1-208ENST00000486533 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
COL12A1-208ENST00000486533 REREQ9P2R6 1566 aa13.8□□□□□ -0.2
COL12A1-208ENST00000486533 LMTK3Q96Q04 1460 aa13.8□□□□□ -0.2
COL12A1-208ENST00000486533 KIDINS220Q9ULH0 1771 aa13.8□□□□□ -0.2
COL12A1-208ENST00000486533 HNRNPMP52272 730 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL12A1-208ENST00000486533 PLEKHH2Q8IVE3 1493 aa13.79□□□□□ -0.2
COL12A1-208ENST00000486533 TIAM1Q13009 1591 aa13.78□□□□□ -0.2
COL12A1-208ENST00000486533 SPAG9O60271 1321 aaKnown RBP13.77□□□□□ -0.2
COL12A1-208ENST00000486533 KIAA1107Q9UPP5 1409 aa13.77□□□□□ -0.21
COL12A1-208ENST00000486533 AGLP35573 1532 aa13.75□□□□□ -0.21
COL12A1-208ENST00000486533 SUPT6HQ7KZ85 1726 aaKnown RBP13.75□□□□□ -0.21
COL12A1-208ENST00000486533 VPS8Q8N3P4 1428 aa13.75□□□□□ -0.21
COL12A1-208ENST00000486533 ATP7AQ04656 1500 aa13.75□□□□□ -0.21
COL12A1-208ENST00000486533 CEBPAP49715 358 aaPredicted RBP13.75□□□□□ -0.21
COL12A1-208ENST00000486533 POLA2Q14181 598 aa13.75□□□□□ -0.21
COL12A1-208ENST00000486533 ESF1Q9H501 851 aaKnown RBP13.75□□□□□ -0.21
COL12A1-208ENST00000486533 HSPA2P54652 639 aa13.74□□□□□ -0.21
COL12A1-208ENST00000486533 ATF5Q9Y2D1 282 aaPredicted RBP13.74□□□□□ -0.21
COL12A1-208ENST00000486533 ZNF644Q9H582 1327 aaPredicted RBP13.73□□□□□ -0.21
COL12A1-208ENST00000486533 NCOA2Q15596 1464 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms