RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ARHGAP5Q13017 1502 aa25.14■■□□□ 1.62
UPF3A-208ENST00000484246 GPATCH8Q9UKJ3 1502 aaKnown RBP25.13■■□□□ 1.61
UPF3A-208ENST00000484246 DENND4BO75064 1496 aaPredicted RBP25.13■■□□□ 1.61
UPF3A-208ENST00000484246 LRRC9Q6ZRR7 1453 aa25.13■■□□□ 1.61
UPF3A-208ENST00000484246 FRMPD1Q5SYB0 1578 aa25.13■■□□□ 1.61
UPF3A-208ENST00000484246 ADGRL1O94910 1474 aa25.12■■□□□ 1.61
UPF3A-208ENST00000484246 POGZQ7Z3K3 1410 aa25.09■■□□□ 1.61
UPF3A-208ENST00000484246 ZMYM4Q5VZL5 1548 aa25.08■■□□□ 1.61
UPF3A-208ENST00000484246 CCNB3Q8WWL7 1395 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 CDC42BPAQ5VT25 1732 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 CDC42BPBQ9Y5S2 1711 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 SCAPERQ9BY12 1400 aa25.07■■□□□ 1.6
UPF3A-208ENST00000484246 NCOA2Q15596 1464 aa25.06■■□□□ 1.6
UPF3A-208ENST00000484246 RAPGEF3O95398 923 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 RICTORQ6R327 1708 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 ABCC1P33527 1531 aa25.05■■□□□ 1.6
UPF3A-208ENST00000484246 SUPT6HQ7KZ85 1726 aaKnown RBP25.03■■□□□ 1.6
UPF3A-208ENST00000484246 MAGI2Q86UL8 1455 aa25.02■■□□□ 1.6
UPF3A-208ENST00000484246 ZNF518AQ6AHZ1 1483 aa25.01■■□□□ 1.59
UPF3A-208ENST00000484246 KANK4Q5T7N3 995 aaPredicted RBP25■■□□□ 1.59
UPF3A-208ENST00000484246 KDM5CP41229 1560 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 PLEKHH2Q8IVE3 1493 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 ITSN2Q9NZM3 1697 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 KIAA1107Q9UPP5 1409 aa24.99■■□□□ 1.59
UPF3A-208ENST00000484246 SAMD9LQ8IVG5 1584 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 ARHGEF40Q8TER5 1519 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 APLP2Q06481 763 aa24.98■■□□□ 1.59
UPF3A-208ENST00000484246 CFDP1Q9UEE9 299 aaPredicted RBP24.98■■□□□ 1.59
UPF3A-208ENST00000484246 ARHGEF12Q9NZN5 1544 aa24.97■■□□□ 1.59
UPF3A-208ENST00000484246 TRAPPC8Q9Y2L5 1435 aa24.92■■□□□ 1.58
UPF3A-208ENST00000484246 ZFYVE16Q7Z3T8 1539 aa24.91■■□□□ 1.58
UPF3A-208ENST00000484246 SYCP2Q9BX26 1530 aa24.91■■□□□ 1.58
UPF3A-208ENST00000484246 MLH3Q9UHC1 1453 aa24.9■■□□□ 1.58
UPF3A-208ENST00000484246 MYOM3Q5VTT5 1437 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 MIA2Q96PC5 1412 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 YEATS2Q9ULM3 1422 aa24.88■■□□□ 1.57
UPF3A-208ENST00000484246 AFAP1Q8N556 730 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 MBD5Q9P267 1494 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 HECW2Q9P2P5 1572 aa24.87■■□□□ 1.57
UPF3A-208ENST00000484246 ZNF777Q9ULD5 760 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-208ENST00000484246 FOXD1Q16676 465 aa24.85■■□□□ 1.57
UPF3A-208ENST00000484246 CAMSAP2Q08AD1 1489 aa24.84■■□□□ 1.57
UPF3A-208ENST00000484246 PLPPR3Q6T4P5 718 aa24.84■■□□□ 1.57
UPF3A-208ENST00000484246 ZNF644Q9H582 1327 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-208ENST00000484246 REREQ9P2R6 1566 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 C9orf84Q5VXU9 1444 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 ATP10AO60312 1499 aa24.8■■□□□ 1.56
UPF3A-208ENST00000484246 KDM4FA0A1W2PPD8 638 aa24.79■■□□□ 1.56
UPF3A-208ENST00000484246 HNRNPMP52272 730 aaKnown RBP eCLIP24.79■■□□□ 1.56
UPF3A-208ENST00000484246 DIP2CQ9Y2E4 1556 aa24.79■■□□□ 1.56
UPF3A-208ENST00000484246 ARHGEF5Q12774 1597 aa24.78■■□□□ 1.56
UPF3A-208ENST00000484246 CCDC141Q6ZP82 1450 aa24.77■■□□□ 1.56
UPF3A-208ENST00000484246 INO80Q9ULG1 1556 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-208ENST00000484246 RSPH4AQ5TD94 716 aa24.77■■□□□ 1.56
UPF3A-208ENST00000484246 ABCA6Q8N139 1617 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 SPAG9O60271 1321 aaKnown RBP24.75■■□□□ 1.55
UPF3A-208ENST00000484246 FGD6Q6ZV73 1430 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 KIDINS220Q9ULH0 1771 aa24.75■■□□□ 1.55
UPF3A-208ENST00000484246 RTEL1-TNFRSF6BF6WH68 1400 aa24.74■■□□□ 1.55
UPF3A-208ENST00000484246 ATP7AQ04656 1500 aa24.74■■□□□ 1.55
UPF3A-208ENST00000484246 TCOF1Q13428 1488 aaKnown RBP24.73■■□□□ 1.55
UPF3A-208ENST00000484246 AGLP35573 1532 aa24.71■■□□□ 1.55
UPF3A-208ENST00000484246 SIGLEC1Q9BZZ2 1709 aa24.69■■□□□ 1.54
UPF3A-208ENST00000484246 BCORL1Q5H9F3 1711 aa24.68■■□□□ 1.54
UPF3A-208ENST00000484246 PTPN23Q9H3S7 1636 aa24.68■■□□□ 1.54
UPF3A-208ENST00000484246 ADAMTSL3P82987 1691 aa24.67■■□□□ 1.54
UPF3A-208ENST00000484246 PLXNC1O60486 1568 aa24.65■■□□□ 1.54
UPF3A-208ENST00000484246 ILDR1Q86SU0 546 aaPredicted RBP24.65■■□□□ 1.54
UPF3A-208ENST00000484246 MAST1Q9Y2H9 1570 aa24.65■■□□□ 1.54
UPF3A-208ENST00000484246 MYT1LQ9UL68 1186 aa24.64■■□□□ 1.54
UPF3A-208ENST00000484246 SHANK2Q9UPX8 1470 aa24.64■■□□□ 1.53
UPF3A-208ENST00000484246 ARID4BQ4LE39 1312 aaPredicted RBP24.63■■□□□ 1.53
UPF3A-208ENST00000484246 A2MP01023 1474 aa24.62■■□□□ 1.53
UPF3A-208ENST00000484246 ABCC5O15440 1437 aa24.59■■□□□ 1.53
UPF3A-208ENST00000484246 TSPY4P0CV99 314 aa24.58■■□□□ 1.53
UPF3A-208ENST00000484246 TSPY10P0CW01 314 aa24.58■■□□□ 1.53
UPF3A-208ENST00000484246 DNMT1P26358 1616 aaKnown RBP24.57■■□□□ 1.52
UPF3A-208ENST00000484246 ADGBQ8N7X0 1667 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 DAPK1P53355 1430 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 MADDQ8WXG6 1647 aa24.57■■□□□ 1.52
UPF3A-208ENST00000484246 DHX29Q7Z478 1369 aaKnown RBP24.54■■□□□ 1.52
UPF3A-208ENST00000484246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.54■■□□□ 1.52
UPF3A-208ENST00000484246 CROCC2H7BZ55 1655 aa24.53■■□□□ 1.52
UPF3A-208ENST00000484246 PTPRMP28827 1452 aa24.53■■□□□ 1.52
UPF3A-208ENST00000484246 ADGRL2O95490 1459 aa24.47■■□□□ 1.51
UPF3A-208ENST00000484246 RRBP1Q9P2E9 1410 aaKnown RBP24.47■■□□□ 1.51
UPF3A-208ENST00000484246 MLECQ14165 292 aa24.46■■□□□ 1.51
UPF3A-208ENST00000484246 CNTLNQ9NXG0 1405 aa24.45■■□□□ 1.51
UPF3A-208ENST00000484246 FER1L4A9Z1Z3 1794 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 RIMS1Q86UR5 1692 aaKnown RBP24.44■■□□□ 1.5
UPF3A-208ENST00000484246 FAM50AQ14320 339 aaKnown RBP24.44■■□□□ 1.5
UPF3A-208ENST00000484246 DUOX2Q9NRD8 1548 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 FAM135AQ9P2D6 1515 aa24.44■■□□□ 1.5
UPF3A-208ENST00000484246 PPARGC1BQ86YN6 1023 aaKnown RBP24.43■■□□□ 1.5
UPF3A-208ENST00000484246 PPP6R1Q9UPN7 881 aa24.43■■□□□ 1.5
UPF3A-208ENST00000484246 KIF15Q9NS87 1388 aa24.42■■□□□ 1.5
UPF3A-208ENST00000484246 ANKRD30AQ9BXX3 1397 aa24.42■■□□□ 1.5
UPF3A-208ENST00000484246 EIF2AK4Q9P2K8 1649 aaKnown RBP24.41■■□□□ 1.5
UPF3A-208ENST00000484246 NCOA1Q15788 1441 aa24.41■■□□□ 1.5
UPF3A-208ENST00000484246 ERBINQ96RT1 1412 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms