RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ARHGAP5Q13017 1502 aa18.8■□□□□ 0.6
SDC1-206ENST00000482879 EFCAB2Q5VUJ9 269 aa18.8■□□□□ 0.6
SDC1-206ENST00000482879 ZNF777Q9ULD5 760 aaPredicted RBP18.79■□□□□ 0.6
SDC1-206ENST00000482879 ARAP3Q8WWN8 1544 aa18.79■□□□□ 0.6
SDC1-206ENST00000482879 PPRC1Q5VV67 1664 aaKnown RBP18.78■□□□□ 0.6
SDC1-206ENST00000482879 FGD6Q6ZV73 1430 aa18.76■□□□□ 0.59
SDC1-206ENST00000482879 MIA2Q96PC5 1412 aa18.76■□□□□ 0.59
SDC1-206ENST00000482879 FANCAO15360 1455 aa18.76■□□□□ 0.59
SDC1-206ENST00000482879 TEX14Q8IWB6 1497 aa18.75■□□□□ 0.59
SDC1-206ENST00000482879 CFAP74Q9C0B2 1584 aa18.74■□□□□ 0.59
SDC1-206ENST00000482879 ZNF644Q9H582 1327 aaPredicted RBP18.74■□□□□ 0.59
SDC1-206ENST00000482879 PTPN23Q9H3S7 1636 aa18.73■□□□□ 0.59
SDC1-206ENST00000482879 AKNAQ7Z591 1439 aa18.72■□□□□ 0.59
SDC1-206ENST00000482879 NEO1Q92859 1461 aa18.71■□□□□ 0.59
SDC1-206ENST00000482879 FAM50AQ14320 339 aaKnown RBP18.71■□□□□ 0.59
SDC1-206ENST00000482879 SAMD9LQ8IVG5 1584 aa18.71■□□□□ 0.59
SDC1-206ENST00000482879 CAMSAP2Q08AD1 1489 aa18.7■□□□□ 0.58
SDC1-206ENST00000482879 RRBP1Q9P2E9 1410 aaKnown RBP18.69■□□□□ 0.58
SDC1-206ENST00000482879 TCOF1Q13428 1488 aaKnown RBP18.68■□□□□ 0.58
SDC1-206ENST00000482879 PLEKHH2Q8IVE3 1493 aa18.68■□□□□ 0.58
SDC1-206ENST00000482879 ADGRL1O94910 1474 aa18.67■□□□□ 0.58
SDC1-206ENST00000482879 HNRNPMP52272 730 aaKnown RBP eCLIP18.67■□□□□ 0.58
SDC1-206ENST00000482879 SCAPERQ9BY12 1400 aa18.66■□□□□ 0.58
SDC1-206ENST00000482879 ABCC1P33527 1531 aa18.65■□□□□ 0.58
SDC1-206ENST00000482879 KIAA1107Q9UPP5 1409 aa18.65■□□□□ 0.58
SDC1-206ENST00000482879 SYCP2Q9BX26 1530 aa18.64■□□□□ 0.58
SDC1-206ENST00000482879 ARHGEF12Q9NZN5 1544 aa18.64■□□□□ 0.57
SDC1-206ENST00000482879 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.63■□□□□ 0.57
SDC1-206ENST00000482879 DENND4BO75064 1496 aaPredicted RBP18.61■□□□□ 0.57
SDC1-206ENST00000482879 MBD5Q9P267 1494 aa18.61■□□□□ 0.57
SDC1-206ENST00000482879 RSPH4AQ5TD94 716 aa18.61■□□□□ 0.57
SDC1-206ENST00000482879 TRAPPC8Q9Y2L5 1435 aa18.6■□□□□ 0.57
SDC1-206ENST00000482879 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
SDC1-206ENST00000482879 RAPGEF3O95398 923 aa18.59■□□□□ 0.57
SDC1-206ENST00000482879 ITGAEP38570 1179 aa18.59■□□□□ 0.57
SDC1-206ENST00000482879 AFAP1Q8N556 730 aa18.59■□□□□ 0.57
SDC1-206ENST00000482879 TRIM26Q12899 539 aaPredicted RBP18.58■□□□□ 0.56
SDC1-206ENST00000482879 DNMT1P26358 1616 aaKnown RBP18.58■□□□□ 0.56
SDC1-206ENST00000482879 CCDC141Q6ZP82 1450 aa18.58■□□□□ 0.56
SDC1-206ENST00000482879 COL17A1Q9UMD9 1497 aaPredicted RBP18.58■□□□□ 0.56
SDC1-206ENST00000482879 RICTORQ6R327 1708 aa18.57■□□□□ 0.56
SDC1-206ENST00000482879 ABCC5O15440 1437 aa18.57■□□□□ 0.56
SDC1-206ENST00000482879 DAPK1P53355 1430 aa18.57■□□□□ 0.56
SDC1-206ENST00000482879 POGZQ7Z3K3 1410 aa18.57■□□□□ 0.56
SDC1-206ENST00000482879 TSPY4P0CV99 314 aa18.56■□□□□ 0.56
SDC1-206ENST00000482879 TSPY10P0CW01 314 aa18.56■□□□□ 0.56
SDC1-206ENST00000482879 KDM6BO15054 1643 aa18.56■□□□□ 0.56
SDC1-206ENST00000482879 ZNF518AQ6AHZ1 1483 aa18.55■□□□□ 0.56
SDC1-206ENST00000482879 CROCC2H7BZ55 1655 aa18.54■□□□□ 0.56
SDC1-206ENST00000482879 MYT1LQ9UL68 1186 aa18.53■□□□□ 0.56
SDC1-206ENST00000482879 SPAG9O60271 1321 aaKnown RBP18.52■□□□□ 0.56
SDC1-206ENST00000482879 FRMPD1Q5SYB0 1578 aa18.52■□□□□ 0.56
SDC1-206ENST00000482879 CHIC2Q9UKJ5 165 aa18.52■□□□□ 0.56
SDC1-206ENST00000482879 PTPRKQ15262 1439 aa18.51■□□□□ 0.55
SDC1-206ENST00000482879 KDM5CP41229 1560 aa18.51■□□□□ 0.55
SDC1-206ENST00000482879 C9orf84Q5VXU9 1444 aa18.49■□□□□ 0.55
SDC1-206ENST00000482879 SHANK2Q9UPX8 1470 aa18.49■□□□□ 0.55
SDC1-206ENST00000482879 MAST1Q9Y2H9 1570 aa18.48■□□□□ 0.55
SDC1-206ENST00000482879 HECW2Q9P2P5 1572 aa18.47■□□□□ 0.55
SDC1-206ENST00000482879 MLH3Q9UHC1 1453 aa18.47■□□□□ 0.55
SDC1-206ENST00000482879 ZMYM4Q5VZL5 1548 aa18.47■□□□□ 0.55
SDC1-206ENST00000482879 KIDINS220Q9ULH0 1771 aa18.47■□□□□ 0.55
SDC1-206ENST00000482879 RTEL1-TNFRSF6BF6WH68 1400 aa18.47■□□□□ 0.55
SDC1-206ENST00000482879 ATP7AQ04656 1500 aa18.46■□□□□ 0.55
SDC1-206ENST00000482879 ADGBQ8N7X0 1667 aa18.46■□□□□ 0.55
SDC1-206ENST00000482879 INO80Q9ULG1 1556 aaPredicted RBP18.46■□□□□ 0.55
SDC1-206ENST00000482879 ZFYVE16Q7Z3T8 1539 aa18.44■□□□□ 0.54
SDC1-206ENST00000482879 ANKRD30AQ9BXX3 1397 aa18.44■□□□□ 0.54
SDC1-206ENST00000482879 RRP7BPQ9NSQ0 103 aa18.44■□□□□ 0.54
SDC1-206ENST00000482879 MAGI2Q86UL8 1455 aa18.44■□□□□ 0.54
SDC1-206ENST00000482879 ROCK1Q13464 1354 aa18.42■□□□□ 0.54
SDC1-206ENST00000482879 NCOA1Q15788 1441 aa18.42■□□□□ 0.54
SDC1-206ENST00000482879 ADGRL2O95490 1459 aa18.42■□□□□ 0.54
SDC1-206ENST00000482879 PCGF6Q9BYE7 350 aa18.41■□□□□ 0.54
SDC1-206ENST00000482879 YEATS2Q9ULM3 1422 aa18.4■□□□□ 0.54
SDC1-206ENST00000482879 PLXNC1O60486 1568 aa18.4■□□□□ 0.54
SDC1-206ENST00000482879 ABCA6Q8N139 1617 aa18.39■□□□□ 0.53
SDC1-206ENST00000482879 KIF15Q9NS87 1388 aa18.39■□□□□ 0.53
SDC1-206ENST00000482879 DIP2CQ9Y2E4 1556 aa18.38■□□□□ 0.53
SDC1-206ENST00000482879 ATP10AO60312 1499 aa18.37■□□□□ 0.53
SDC1-206ENST00000482879 ARHGEF40Q8TER5 1519 aa18.37■□□□□ 0.53
SDC1-206ENST00000482879 DUOX2Q9NRD8 1548 aa18.35■□□□□ 0.53
SDC1-206ENST00000482879 A2MP01023 1474 aa18.34■□□□□ 0.53
SDC1-206ENST00000482879 HFM1A2PYH4 1435 aa18.34■□□□□ 0.53
SDC1-206ENST00000482879 NAIPQ13075 1403 aa18.34■□□□□ 0.53
SDC1-206ENST00000482879 DHX29Q7Z478 1369 aaKnown RBP18.34■□□□□ 0.53
SDC1-206ENST00000482879 GCC2Q8IWJ2 1684 aa18.34■□□□□ 0.53
SDC1-206ENST00000482879 SETD5Q9C0A6 1442 aa18.32■□□□□ 0.52
SDC1-206ENST00000482879 ANKRD50Q9ULJ7 1429 aa18.32■□□□□ 0.52
SDC1-206ENST00000482879 ERBINQ96RT1 1412 aa18.29■□□□□ 0.52
SDC1-206ENST00000482879 REREQ9P2R6 1566 aa18.29■□□□□ 0.52
SDC1-206ENST00000482879 KIF3BO15066 747 aa18.27■□□□□ 0.52
SDC1-206ENST00000482879 ARID4BQ4LE39 1312 aaPredicted RBP18.26■□□□□ 0.51
SDC1-206ENST00000482879 EIF2AK4Q9P2K8 1649 aaKnown RBP18.26■□□□□ 0.51
SDC1-206ENST00000482879 SIGLEC1Q9BZZ2 1709 aa18.26■□□□□ 0.51
SDC1-206ENST00000482879 RAB3GAP2Q9H2M9 1393 aa18.25■□□□□ 0.51
SDC1-206ENST00000482879 AGLP35573 1532 aa18.24■□□□□ 0.51
SDC1-206ENST00000482879 BCORL1Q5H9F3 1711 aa18.23■□□□□ 0.51
SDC1-206ENST00000482879 GGT6Q6P531 493 aa18.22■□□□□ 0.51
SDC1-206ENST00000482879 HRCP23327 699 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms