RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 PLEKHD1A6NEE1 506 aa21.04■□□□□ 0.96
CHD3-211ENST00000481999 CFDP1Q9UEE9 299 aaPredicted RBP21.04■□□□□ 0.96
CHD3-211ENST00000481999 GPATCH8Q9UKJ3 1502 aaKnown RBP21.02■□□□□ 0.95
CHD3-211ENST00000481999 ABCC5O15440 1437 aa21■□□□□ 0.95
CHD3-211ENST00000481999 DAPK1P53355 1430 aa21■□□□□ 0.95
CHD3-211ENST00000481999 CAMSAP2Q08AD1 1489 aa20.97■□□□□ 0.95
CHD3-211ENST00000481999 TRIM52Q96A61 297 aa20.97■□□□□ 0.95
CHD3-211ENST00000481999 UACAQ9BZF9 1416 aa20.96■□□□□ 0.95
CHD3-211ENST00000481999 ADCY10Q96PN6 1610 aa20.94■□□□□ 0.94
CHD3-211ENST00000481999 FOXD1Q16676 465 aa20.94■□□□□ 0.94
CHD3-211ENST00000481999 DNMT1P26358 1616 aaKnown RBP20.93■□□□□ 0.94
CHD3-211ENST00000481999 ABCC10Q5T3U5 1492 aa20.92■□□□□ 0.94
CHD3-211ENST00000481999 CDC42BPAQ5VT25 1732 aa20.92■□□□□ 0.94
CHD3-211ENST00000481999 GCC2Q8IWJ2 1684 aa20.91■□□□□ 0.94
CHD3-211ENST00000481999 CYB5RLQ6IPT4 315 aa20.91■□□□□ 0.94
CHD3-211ENST00000481999 DENND4BO75064 1496 aaPredicted RBP20.91■□□□□ 0.94
CHD3-211ENST00000481999 KCNH8Q96L42 1107 aa20.89■□□□□ 0.94
CHD3-211ENST00000481999 ITSN2Q9NZM3 1697 aa20.89■□□□□ 0.94
CHD3-211ENST00000481999 HNRNPMP52272 730 aaKnown RBP eCLIP20.86■□□□□ 0.93
CHD3-211ENST00000481999 PELP1Q8IZL8 1130 aaKnown RBP20.85■□□□□ 0.93
CHD3-211ENST00000481999 ABCC2Q92887 1545 aa20.85■□□□□ 0.93
CHD3-211ENST00000481999 AKNAQ7Z591 1439 aa20.85■□□□□ 0.93
CHD3-211ENST00000481999 HIRIP3Q9BW71 556 aaPredicted RBP20.84■□□□□ 0.93
CHD3-211ENST00000481999 MIER1Q8N108 512 aa20.83■□□□□ 0.92
CHD3-211ENST00000481999 MPHOSPH9Q99550 1183 aa20.82■□□□□ 0.92
CHD3-211ENST00000481999 ROCK1Q13464 1354 aa20.81■□□□□ 0.92
CHD3-211ENST00000481999 TTC37Q6PGP7 1564 aa20.81■□□□□ 0.92
CHD3-211ENST00000481999 NCOA1Q15788 1441 aa20.81■□□□□ 0.92
CHD3-211ENST00000481999 GTF3C3Q9Y5Q9 886 aa20.79■□□□□ 0.92
CHD3-211ENST00000481999 CDC42BPBQ9Y5S2 1711 aa20.78■□□□□ 0.92
CHD3-211ENST00000481999 TONSLQ96HA7 1378 aa20.78■□□□□ 0.92
CHD3-211ENST00000481999 PPP1R15AO75807 674 aaPredicted RBP20.77■□□□□ 0.92
CHD3-211ENST00000481999 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.77■□□□□ 0.92
CHD3-211ENST00000481999 ZCCHC11Q5TAX3 1644 aaKnown RBP20.76■□□□□ 0.91
CHD3-211ENST00000481999 CROCC2H7BZ55 1655 aa20.76■□□□□ 0.91
CHD3-211ENST00000481999 SAMD9LQ8IVG5 1584 aa20.75■□□□□ 0.91
CHD3-211ENST00000481999 SLC4A1APQ9BWU0 796 aaKnown RBP20.74■□□□□ 0.91
CHD3-211ENST00000481999 C9orf84Q5VXU9 1444 aa20.73■□□□□ 0.91
CHD3-211ENST00000481999 PREX2Q70Z35 1606 aa20.72■□□□□ 0.91
CHD3-211ENST00000481999 MBD5Q9P267 1494 aa20.72■□□□□ 0.91
CHD3-211ENST00000481999 ARHGAP5Q13017 1502 aa20.71■□□□□ 0.91
CHD3-211ENST00000481999 ADGBQ8N7X0 1667 aa20.71■□□□□ 0.91
CHD3-211ENST00000481999 ANKRD30AQ9BXX3 1397 aa20.7■□□□□ 0.9
CHD3-211ENST00000481999 TSPY4P0CV99 314 aa20.7■□□□□ 0.9
CHD3-211ENST00000481999 TSPY10P0CW01 314 aa20.7■□□□□ 0.9
CHD3-211ENST00000481999 SYCP2Q9BX26 1530 aa20.69■□□□□ 0.9
CHD3-211ENST00000481999 KDM5BQ9UGL1 1544 aa20.69■□□□□ 0.9
CHD3-211ENST00000481999 ADGRL2O95490 1459 aa20.68■□□□□ 0.9
CHD3-211ENST00000481999 YTHDC1Q96MU7 727 aaKnown RBP20.68■□□□□ 0.9
CHD3-211ENST00000481999 ANKRD50Q9ULJ7 1429 aa20.68■□□□□ 0.9
CHD3-211ENST00000481999 PZPP20742 1482 aa20.66■□□□□ 0.9
CHD3-211ENST00000481999 TIMELESSQ9UNS1 1208 aa20.66■□□□□ 0.9
CHD3-211ENST00000481999 UHRF1BP1LA0JNW5 1464 aa20.66■□□□□ 0.9
CHD3-211ENST00000481999 KIF15Q9NS87 1388 aa20.64■□□□□ 0.9
CHD3-211ENST00000481999 ANKRD30BQ9BXX2 1392 aa20.63■□□□□ 0.89
CHD3-211ENST00000481999 ARHGEF12Q9NZN5 1544 aa20.62■□□□□ 0.89
CHD3-211ENST00000481999 L3MBTL2Q969R5 705 aa20.62■□□□□ 0.89
CHD3-211ENST00000481999 MYO5CQ9NQX4 1742 aa20.62■□□□□ 0.89
CHD3-211ENST00000481999 CCDC141Q6ZP82 1450 aa20.62■□□□□ 0.89
CHD3-211ENST00000481999 PKD2Q13563 968 aa20.61■□□□□ 0.89
CHD3-211ENST00000481999 SHANK2Q9UPX8 1470 aa20.61■□□□□ 0.89
CHD3-211ENST00000481999 NUP155O75694 1391 aa20.59■□□□□ 0.89
CHD3-211ENST00000481999 ARHGEF5Q12774 1597 aa20.59■□□□□ 0.89
CHD3-211ENST00000481999 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.89
CHD3-211ENST00000481999 DDX10Q13206 875 aaKnown RBP20.58■□□□□ 0.88
CHD3-211ENST00000481999 PLCH2O75038 1416 aa20.57■□□□□ 0.88
CHD3-211ENST00000481999 RPRD2Q5VT52 1461 aaKnown RBP20.54■□□□□ 0.88
CHD3-211ENST00000481999 WDR7Q9Y4E6 1490 aa20.53■□□□□ 0.88
CHD3-211ENST00000481999 AFAP1Q8N556 730 aa20.53■□□□□ 0.88
CHD3-211ENST00000481999 TRAPPC8Q9Y2L5 1435 aa20.53■□□□□ 0.88
CHD3-211ENST00000481999 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.53■□□□□ 0.88
CHD3-211ENST00000481999 EFCAB2Q5VUJ9 269 aa20.52■□□□□ 0.88
CHD3-211ENST00000481999 NBPF8Q3BBV2 869 aa20.52■□□□□ 0.87
CHD3-211ENST00000481999 ASXL2Q76L83 1435 aa20.51■□□□□ 0.87
CHD3-211ENST00000481999 KIAA1107Q9UPP5 1409 aa20.5■□□□□ 0.87
CHD3-211ENST00000481999 TEX14Q8IWB6 1497 aa20.5■□□□□ 0.87
CHD3-211ENST00000481999 RSPH4AQ5TD94 716 aa20.48■□□□□ 0.87
CHD3-211ENST00000481999 PLEKHH2Q8IVE3 1493 aa20.47■□□□□ 0.87
CHD3-211ENST00000481999 ZNF326Q5BKZ1 582 aaKnown RBP20.47■□□□□ 0.87
CHD3-211ENST00000481999 ABCC1P33527 1531 aa20.47■□□□□ 0.87
CHD3-211ENST00000481999 HSPA5P11021 654 aaKnown RBP20.44■□□□□ 0.86
CHD3-211ENST00000481999 FANCAO15360 1455 aa20.42■□□□□ 0.86
CHD3-211ENST00000481999 FAM135AQ9P2D6 1515 aa20.42■□□□□ 0.86
CHD3-211ENST00000481999 MAST1Q9Y2H9 1570 aa20.41■□□□□ 0.86
CHD3-211ENST00000481999 SPAG9O60271 1321 aaKnown RBP20.39■□□□□ 0.85
CHD3-211ENST00000481999 KDM5DQ9BY66 1539 aa20.38■□□□□ 0.85
CHD3-211ENST00000481999 ABCA9Q8IUA7 1624 aa20.38■□□□□ 0.85
CHD3-211ENST00000481999 MYT1LQ9UL68 1186 aa20.38■□□□□ 0.85
CHD3-211ENST00000481999 TRHP20396 242 aaPredicted RBP20.37■□□□□ 0.85
CHD3-211ENST00000481999 PLXNC1O60486 1568 aa20.37■□□□□ 0.85
CHD3-211ENST00000481999 KDM2AQ9Y2K7 1162 aa20.36■□□□□ 0.85
CHD3-211ENST00000481999 C11orf95C9JLR9 678 aaPredicted RBP20.36■□□□□ 0.85
CHD3-211ENST00000481999 SCAPERQ9BY12 1400 aa20.35■□□□□ 0.85
CHD3-211ENST00000481999 DIP2BQ9P265 1576 aa20.35■□□□□ 0.85
CHD3-211ENST00000481999 FAM69CQ0P6D2 419 aa20.34■□□□□ 0.85
CHD3-211ENST00000481999 ADGRL1O94910 1474 aa20.34■□□□□ 0.85
CHD3-211ENST00000481999 WASHC2AQ641Q2 1341 aa20.34■□□□□ 0.85
CHD3-211ENST00000481999 EIF4G2P78344 907 aaKnown RBP eCLIP20.34■□□□□ 0.85
CHD3-211ENST00000481999 ZFYVE16Q7Z3T8 1539 aa20.33■□□□□ 0.84
CHD3-211ENST00000481999 DUOX2Q9NRD8 1548 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms