RNA–Protein interactions for RNA: ENST00000481300.1

CBX3-207, Transcript of chromobox 3, humanhuman

TSL 2

Gene CBX3, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-207ENST00000481300 EMP3P54852 163 aa9.99□□□□□ -0.81
CBX3-207ENST00000481300 DOK7Q18PE1 504 aa9.98□□□□□ -0.81
CBX3-207ENST00000481300 POTEB3A0JP26 581 aa9.96□□□□□ -0.82
CBX3-207ENST00000481300 POTEBQ6S5H4 581 aa9.96□□□□□ -0.82
CBX3-207ENST00000481300 ZNF710Q8N1W2 664 aa9.96□□□□□ -0.82
CBX3-207ENST00000481300 KIF3CO14782 793 aa9.95□□□□□ -0.82
CBX3-207ENST00000481300 HOXB1P14653 301 aaPredicted RBP9.95□□□□□ -0.82
CBX3-207ENST00000481300 NKX1-1Q15270 411 aaPredicted RBP9.95□□□□□ -0.82
CBX3-207ENST00000481300 DNAJC5Q9H3Z4 198 aa9.94□□□□□ -0.82
CBX3-207ENST00000481300 C2orf72A6NCS6 295 aa9.93□□□□□ -0.82
CBX3-207ENST00000481300 FAM205CA6NFA0 338 aa9.93□□□□□ -0.82
CBX3-207ENST00000481300 HS3ST6Q96QI5 342 aa9.93□□□□□ -0.82
CBX3-207ENST00000481300 RIMBP2O15034 1052 aa9.91□□□□□ -0.82
CBX3-207ENST00000481300 GPR153Q6NV75 609 aa9.9□□□□□ -0.82
CBX3-207ENST00000481300 ZSWIM6Q9HCJ5 1215 aa9.9□□□□□ -0.82
CBX3-207ENST00000481300 ARSIQ5FYB1 569 aa9.85□□□□□ -0.83
CBX3-207ENST00000481300 TMC2Q8TDI7 906 aa9.85□□□□□ -0.83
CBX3-207ENST00000481300 ERBB3P21860 1342 aa9.84□□□□□ -0.83
CBX3-207ENST00000481300 KHSRPQ92945 711 aaKnown RBP eCLIP9.84□□□□□ -0.837e-9■■■□□ 14.6
CBX3-207ENST00000481300 KRTAP3-3Q9BYR6 98 aa9.84□□□□□ -0.83
CBX3-207ENST00000481300 KRTAP3-2Q9BYR7 98 aa9.84□□□□□ -0.83
CBX3-207ENST00000481300 DCAF8L2P0C7V8 631 aa9.82□□□□□ -0.84
CBX3-207ENST00000481300 VARS2Q5ST30 1063 aaKnown RBP9.81□□□□□ -0.84
CBX3-207ENST00000481300 SLC34A2O95436 690 aa9.8□□□□□ -0.84
CBX3-207ENST00000481300 GTPBP6O43824 516 aaPredicted RBP9.79□□□□□ -0.84
CBX3-207ENST00000481300 SPNS2Q8IVW8 549 aa9.79□□□□□ -0.84
CBX3-207ENST00000481300 RYDENQ9NUL5 291 aaKnown RBP9.79□□□□□ -0.84
CBX3-207ENST00000481300 GPHNQ9NQX3 736 aaPredicted RBP9.78□□□□□ -0.84
CBX3-207ENST00000481300 PCDHGA4Q9Y5G9 962 aa9.77□□□□□ -0.85
CBX3-207ENST00000481300 FOXK1P85037 733 aa9.76□□□□□ -0.85
CBX3-207ENST00000481300 ZNF316A6NFI3 1004 aaPredicted RBP9.75□□□□□ -0.85
CBX3-207ENST00000481300 NUDT7P0C024 238 aa9.75□□□□□ -0.85
CBX3-207ENST00000481300 DSG2Q14126 1118 aa9.75□□□□□ -0.85
CBX3-207ENST00000481300 MMRN1Q13201 1228 aa9.74□□□□□ -0.85
CBX3-207ENST00000481300 PLPP6Q8IY26 295 aa9.74□□□□□ -0.85
CBX3-207ENST00000481300 ZNF687Q8N1G0 1237 aa9.73□□□□□ -0.85
CBX3-207ENST00000481300 CRISPLD2Q9H0B8 497 aa9.72□□□□□ -0.85
CBX3-207ENST00000481300 PTCD2Q8WV60 388 aaKnown RBP9.71□□□□□ -0.86
CBX3-207ENST00000481300 LHX6Q9UPM6 363 aa9.7□□□□□ -0.86
CBX3-207ENST00000481300 NCKAP5LQ9HCH0 1330 aa9.7□□□□□ -0.86
CBX3-207ENST00000481300 KDM4FA0A1W2PPD8 638 aa9.69□□□□□ -0.86
CBX3-207ENST00000481300 PPP1R15BQ5SWA1 713 aa9.65□□□□□ -0.86
CBX3-207ENST00000481300 SLC24A1O60721 1099 aa9.64□□□□□ -0.87
CBX3-207ENST00000481300 PDE4AP27815 886 aa9.63□□□□□ -0.87
CBX3-207ENST00000481300 POTEEQ6S8J3 1075 aa9.63□□□□□ -0.87
CBX3-207ENST00000481300 CADPS2Q86UW7 1296 aa9.63□□□□□ -0.87
CBX3-207ENST00000481300 OXER1Q8TDS5 423 aa9.62□□□□□ -0.87
CBX3-207ENST00000481300 BBXQ8WY36 941 aaPredicted RBP9.61□□□□□ -0.87
CBX3-207ENST00000481300 UPF1Q92900 1129 aaKnown RBP eCLIP9.61□□□□□ -0.87
CBX3-207ENST00000481300 LARP6Q9BRS8 491 aaKnown RBP9.61□□□□□ -0.87
CBX3-207ENST00000481300 TBC1D12O60347 775 aa9.59□□□□□ -0.87
CBX3-207ENST00000481300 MFSD10Q14728 455 aa9.59□□□□□ -0.87
CBX3-207ENST00000481300 LSM11P83369 360 aaKnown RBP eCLIP9.58□□□□□ -0.88
CBX3-207ENST00000481300 DDX27Q96GQ7 796 aaKnown RBP9.58□□□□□ -0.88
CBX3-207ENST00000481300 AXIN2Q9Y2T1 843 aa9.58□□□□□ -0.88
CBX3-207ENST00000481300 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
CBX3-207ENST00000481300 PBX2P40425 430 aa9.57□□□□□ -0.88
CBX3-207ENST00000481300 ANKRD13DQ6ZTN6 518 aa9.57□□□□□ -0.88
CBX3-207ENST00000481300 ARHGAP33O14559 1287 aa9.52□□□□□ -0.89
CBX3-207ENST00000481300 PPP4R3BQ5MIZ7 849 aa9.52□□□□□ -0.89
CBX3-207ENST00000481300 RNF166Q96A37 237 aaPredicted RBP9.52□□□□□ -0.89
CBX3-207ENST00000481300 EMILIN3Q9NT22 766 aa9.52□□□□□ -0.89
CBX3-207ENST00000481300 MYT1LQ9UL68 1186 aa9.52□□□□□ -0.89
CBX3-207ENST00000481300 PTGER2P43116 358 aa9.5□□□□□ -0.89
CBX3-207ENST00000481300 PSEN2P49810 448 aa9.49□□□□□ -0.89
CBX3-207ENST00000481300 DMRTA1Q5VZB9 504 aa9.49□□□□□ -0.89
CBX3-207ENST00000481300 SPRYD3Q8NCJ5 442 aa9.49□□□□□ -0.89
CBX3-207ENST00000481300 ANO8Q9HCE9 1232 aaPredicted RBP9.49□□□□□ -0.89
CBX3-207ENST00000481300 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.49□□□□□ -0.89
CBX3-207ENST00000481300 EVI5O60447 810 aa9.48□□□□□ -0.89
CBX3-207ENST00000481300 PLCB2Q00722 1185 aa9.48□□□□□ -0.89
CBX3-207ENST00000481300 ZNF454Q8N9F8 522 aa9.47□□□□□ -0.89
CBX3-207ENST00000481300 FOSBP53539 338 aa9.46□□□□□ -0.9
CBX3-207ENST00000481300 MAP3K9P80192 1104 aa9.46□□□□□ -0.9
CBX3-207ENST00000481300 ADGRD1Q6QNK2 874 aa9.46□□□□□ -0.9
CBX3-207ENST00000481300 CAMK2BQ13554 666 aa9.45□□□□□ -0.9
CBX3-207ENST00000481300 PAXIP1Q6ZW49 1069 aaPredicted RBP9.44□□□□□ -0.9
CBX3-207ENST00000481300 JPH4Q96JJ6 628 aa9.44□□□□□ -0.9
CBX3-207ENST00000481300 KCNK17Q96T54 332 aa9.44□□□□□ -0.9
CBX3-207ENST00000481300 CFAP44Q96MT7 982 aa9.43□□□□□ -0.9
CBX3-207ENST00000481300 TK2O00142 265 aa9.42□□□□□ -0.9
CBX3-207ENST00000481300 BCL2L12Q9HB09 334 aa9.42□□□□□ -0.9
CBX3-207ENST00000481300 HRO43593 1189 aa9.41□□□□□ -0.9
CBX3-207ENST00000481300 DPYSL4O14531 572 aa9.39□□□□□ -0.91
CBX3-207ENST00000481300 ADAM33Q9BZ11 813 aa9.39□□□□□ -0.91
CBX3-207ENST00000481300 HAP1P54257 671 aaPredicted RBP9.38□□□□□ -0.91
CBX3-207ENST00000481300 ZDHHC16Q969W1 377 aa9.38□□□□□ -0.91
CBX3-207ENST00000481300 KCNH8Q96L42 1107 aa9.37□□□□□ -0.91
CBX3-207ENST00000481300 VPS9D1Q9Y2B5 631 aa9.37□□□□□ -0.91
CBX3-207ENST00000481300 PCDHGA10Q9Y5H3 936 aa9.37□□□□□ -0.91
CBX3-207ENST00000481300 PTPREP23469 700 aa9.36□□□□□ -0.91
CBX3-207ENST00000481300 SLC4A5Q9BY07 1137 aa9.34□□□□□ -0.91
CBX3-207ENST00000481300 PHF14O94880 888 aa9.33□□□□□ -0.92
CBX3-207ENST00000481300 ZBED2Q9BTP6 218 aa9.33□□□□□ -0.92
CBX3-207ENST00000481300 TYW1BQ6NUM6 668 aa9.32□□□□□ -0.92
CBX3-207ENST00000481300 FBXW7Q969H0 707 aa9.3□□□□□ -0.92
CBX3-207ENST00000481300 BHMG1C9JSJ3 638 aaPredicted RBP9.29□□□□□ -0.92
CBX3-207ENST00000481300 COL9A1P20849 921 aa9.29□□□□□ -0.92
CBX3-207ENST00000481300 PDIA6Q15084 440 aa9.29□□□□□ -0.92
CBX3-207ENST00000481300 E2F4Q16254 413 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms