RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-223ENST00000480525 GPATCH8Q9UKJ3 1502 aaKnown RBP8.05□□□□□ -1.12
HDAC6-223ENST00000480525 REREQ9P2R6 1566 aa8.05□□□□□ -1.12
HDAC6-223ENST00000480525 RANGAP1P46060 587 aaPredicted RBP8.04□□□□□ -1.12
HDAC6-223ENST00000480525 NCOA2Q15596 1464 aa8.04□□□□□ -1.12
HDAC6-223ENST00000480525 ZNF518AQ6AHZ1 1483 aa8.04□□□□□ -1.12
HDAC6-223ENST00000480525 FRMPD1Q5SYB0 1578 aa8.04□□□□□ -1.12
HDAC6-223ENST00000480525 AKNAQ7Z591 1439 aa8.03□□□□□ -1.12
HDAC6-223ENST00000480525 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.03□□□□□ -1.12
HDAC6-223ENST00000480525 HNRNPUL2Q1KMD3 747 aaKnown RBP8.03□□□□□ -1.12
HDAC6-223ENST00000480525 ARHGAP5Q13017 1502 aa8.03□□□□□ -1.12
HDAC6-223ENST00000480525 POGZQ7Z3K3 1410 aa8.03□□□□□ -1.12
HDAC6-223ENST00000480525 ARHGEF5Q12774 1597 aa8.02□□□□□ -1.13
HDAC6-223ENST00000480525 DENND4BO75064 1496 aaPredicted RBP8.02□□□□□ -1.13
HDAC6-223ENST00000480525 ADGRL1O94910 1474 aa8.02□□□□□ -1.13
HDAC6-223ENST00000480525 EFCAB2Q5VUJ9 269 aa8.02□□□□□ -1.13
HDAC6-223ENST00000480525 SAMD9LQ8IVG5 1584 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 MLH3Q9UHC1 1453 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 COL17A1Q9UMD9 1497 aaPredicted RBP8.01□□□□□ -1.13
HDAC6-223ENST00000480525 RSPH4AQ5TD94 716 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 EHMT2Q96KQ7 1210 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 KCNH8Q96L42 1107 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 ARHGEF40Q8TER5 1519 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 MYOM3Q5VTT5 1437 aa8.01□□□□□ -1.13
HDAC6-223ENST00000480525 CCNB3Q8WWL7 1395 aa8□□□□□ -1.13
HDAC6-223ENST00000480525 HECW2Q9P2P5 1572 aa8□□□□□ -1.13
HDAC6-223ENST00000480525 BCORL1Q5H9F3 1711 aa8□□□□□ -1.13
HDAC6-223ENST00000480525 TCOF1Q13428 1488 aaKnown RBP8□□□□□ -1.13
HDAC6-223ENST00000480525 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.99□□□□□ -1.13
HDAC6-223ENST00000480525 RTEL1-TNFRSF6BF6WH68 1400 aa7.99□□□□□ -1.13
HDAC6-223ENST00000480525 INO80Q9ULG1 1556 aaPredicted RBP7.99□□□□□ -1.13
HDAC6-223ENST00000480525 MAST1Q9Y2H9 1570 aa7.99□□□□□ -1.13
HDAC6-223ENST00000480525 FAM135AQ9P2D6 1515 aa7.98□□□□□ -1.13
HDAC6-223ENST00000480525 APLP2Q06481 763 aa7.98□□□□□ -1.13
HDAC6-223ENST00000480525 MBD5Q9P267 1494 aa7.98□□□□□ -1.13
HDAC6-223ENST00000480525 SHANK2Q9UPX8 1470 aa7.98□□□□□ -1.13
HDAC6-223ENST00000480525 SCAPERQ9BY12 1400 aa7.97□□□□□ -1.13
HDAC6-223ENST00000480525 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
HDAC6-223ENST00000480525 CROCC2H7BZ55 1655 aa7.97□□□□□ -1.13
HDAC6-223ENST00000480525 ADGBQ8N7X0 1667 aa7.97□□□□□ -1.13
HDAC6-223ENST00000480525 AGLP35573 1532 aa7.97□□□□□ -1.13
HDAC6-223ENST00000480525 KIDINS220Q9ULH0 1771 aa7.97□□□□□ -1.13
HDAC6-223ENST00000480525 CAMSAP2Q08AD1 1489 aa7.96□□□□□ -1.13
HDAC6-223ENST00000480525 ARID3CA6NKF2 412 aa7.96□□□□□ -1.14
HDAC6-223ENST00000480525 ZFYVE16Q7Z3T8 1539 aa7.96□□□□□ -1.14
HDAC6-223ENST00000480525 SYCP2Q9BX26 1530 aa7.96□□□□□ -1.14
HDAC6-223ENST00000480525 PLXNC1O60486 1568 aa7.96□□□□□ -1.14
HDAC6-223ENST00000480525 CCDC141Q6ZP82 1450 aa7.95□□□□□ -1.14
HDAC6-223ENST00000480525 ARHGEF12Q9NZN5 1544 aa7.95□□□□□ -1.14
HDAC6-223ENST00000480525 CFDP1Q9UEE9 299 aaPredicted RBP7.95□□□□□ -1.14
HDAC6-223ENST00000480525 DNMT1P26358 1616 aaKnown RBP7.95□□□□□ -1.14
HDAC6-223ENST00000480525 PTPN23Q9H3S7 1636 aa7.95□□□□□ -1.14
HDAC6-223ENST00000480525 FGD6Q6ZV73 1430 aa7.95□□□□□ -1.14
HDAC6-223ENST00000480525 ATP7AQ04656 1500 aa7.94□□□□□ -1.14
HDAC6-223ENST00000480525 DIP2CQ9Y2E4 1556 aa7.94□□□□□ -1.14
HDAC6-223ENST00000480525 C9orf84Q5VXU9 1444 aa7.94□□□□□ -1.14
HDAC6-223ENST00000480525 ABCA6Q8N139 1617 aa7.93□□□□□ -1.14
HDAC6-223ENST00000480525 EIF2AK4Q9P2K8 1649 aaKnown RBP7.93□□□□□ -1.14
HDAC6-223ENST00000480525 KANK4Q5T7N3 995 aaPredicted RBP7.93□□□□□ -1.14
HDAC6-223ENST00000480525 ATP10AO60312 1499 aa7.93□□□□□ -1.14
HDAC6-223ENST00000480525 RRBP1Q9P2E9 1410 aaKnown RBP7.92□□□□□ -1.14
HDAC6-223ENST00000480525 TRAPPC8Q9Y2L5 1435 aa7.92□□□□□ -1.14
HDAC6-223ENST00000480525 ADGRL2O95490 1459 aa7.92□□□□□ -1.14
HDAC6-223ENST00000480525 ADAMTSL3P82987 1691 aa7.92□□□□□ -1.14
HDAC6-223ENST00000480525 PPP6R1Q9UPN7 881 aa7.9□□□□□ -1.14
HDAC6-223ENST00000480525 MROH2AA6NES4 1674 aa7.89□□□□□ -1.15
HDAC6-223ENST00000480525 SETD1BQ9UPS6 1966 aaKnown RBP7.89□□□□□ -1.15
HDAC6-223ENST00000480525 RNF17Q9BXT8 1623 aaKnown RBP7.89□□□□□ -1.15
HDAC6-223ENST00000480525 ROCK1Q13464 1354 aa7.88□□□□□ -1.15
HDAC6-223ENST00000480525 RAPGEF3O95398 923 aa7.88□□□□□ -1.15
HDAC6-223ENST00000480525 ZC3H13Q5T200 1668 aaKnown RBP7.88□□□□□ -1.15
HDAC6-223ENST00000480525 DUOX2Q9NRD8 1548 aa7.88□□□□□ -1.15
HDAC6-223ENST00000480525 DAPK1P53355 1430 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 ERBINQ96RT1 1412 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 YEATS2Q9ULM3 1422 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 SPAG9O60271 1321 aaKnown RBP7.87□□□□□ -1.15
HDAC6-223ENST00000480525 DEPDC5O75140 1603 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 KDM5DQ9BY66 1539 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 A2MP01023 1474 aa7.87□□□□□ -1.15
HDAC6-223ENST00000480525 ABCC5O15440 1437 aa7.86□□□□□ -1.15
HDAC6-223ENST00000480525 CNTLNQ9NXG0 1405 aa7.86□□□□□ -1.15
HDAC6-223ENST00000480525 SIGLEC1Q9BZZ2 1709 aa7.86□□□□□ -1.15
HDAC6-223ENST00000480525 DHX29Q7Z478 1369 aaKnown RBP7.86□□□□□ -1.15
HDAC6-223ENST00000480525 ACIN1Q9UKV3 1341 aaKnown RBP7.86□□□□□ -1.15
HDAC6-223ENST00000480525 AFAP1Q8N556 730 aa7.86□□□□□ -1.15
HDAC6-223ENST00000480525 FER1L4A9Z1Z3 1794 aa7.86□□□□□ -1.15
HDAC6-223ENST00000480525 PRDM15P57071 1507 aaPredicted RBP7.85□□□□□ -1.15
HDAC6-223ENST00000480525 TSPY4P0CV99 314 aa7.85□□□□□ -1.15
HDAC6-223ENST00000480525 TSPY10P0CW01 314 aa7.85□□□□□ -1.15
HDAC6-223ENST00000480525 NCOA1Q15788 1441 aa7.85□□□□□ -1.15
HDAC6-223ENST00000480525 ZNF644Q9H582 1327 aaPredicted RBP7.84□□□□□ -1.15
HDAC6-223ENST00000480525 ANKRD30AQ9BXX3 1397 aa7.84□□□□□ -1.16
HDAC6-223ENST00000480525 GCC2Q8IWJ2 1684 aa7.83□□□□□ -1.16
HDAC6-223ENST00000480525 HNRNPMP52272 730 aaKnown RBP eCLIP7.83□□□□□ -1.16
HDAC6-223ENST00000480525 MADDQ8WXG6 1647 aa7.82□□□□□ -1.16
HDAC6-223ENST00000480525 VWDEQ8N2E2 1590 aa7.82□□□□□ -1.16
HDAC6-223ENST00000480525 ZNF777Q9ULD5 760 aaPredicted RBP7.82□□□□□ -1.16
HDAC6-223ENST00000480525 LMTK2Q8IWU2 1503 aa7.82□□□□□ -1.16
HDAC6-223ENST00000480525 MROH1Q8NDA8 1641 aa7.81□□□□□ -1.16
HDAC6-223ENST00000480525 UNC13BO14795 1591 aa7.81□□□□□ -1.16
HDAC6-223ENST00000480525 NPATQ14207 1427 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms