RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 DENND4BO75064 1496 aaPredicted RBP24.45■■□□□ 1.51
C9orf3-217ENST00000479161 RICTORQ6R327 1708 aa24.44■■□□□ 1.5
C9orf3-217ENST00000479161 ARHGAP5Q13017 1502 aa24.43■■□□□ 1.5
C9orf3-217ENST00000479161 GPATCH8Q9UKJ3 1502 aaKnown RBP24.43■■□□□ 1.5
C9orf3-217ENST00000479161 ADGRL1O94910 1474 aa24.42■■□□□ 1.5
C9orf3-217ENST00000479161 LRRC9Q6ZRR7 1453 aa24.41■■□□□ 1.5
C9orf3-217ENST00000479161 FRMPD1Q5SYB0 1578 aa24.41■■□□□ 1.5
C9orf3-217ENST00000479161 SUPT6HQ7KZ85 1726 aaKnown RBP24.39■■□□□ 1.5
C9orf3-217ENST00000479161 SCAPERQ9BY12 1400 aa24.39■■□□□ 1.5
C9orf3-217ENST00000479161 RAPGEF3O95398 923 aa24.39■■□□□ 1.49
C9orf3-217ENST00000479161 ZMYM4Q5VZL5 1548 aa24.39■■□□□ 1.49
C9orf3-217ENST00000479161 CCNB3Q8WWL7 1395 aa24.38■■□□□ 1.49
C9orf3-217ENST00000479161 MAGI2Q86UL8 1455 aa24.38■■□□□ 1.49
C9orf3-217ENST00000479161 POGZQ7Z3K3 1410 aa24.36■■□□□ 1.49
C9orf3-217ENST00000479161 ITSN2Q9NZM3 1697 aa24.35■■□□□ 1.49
C9orf3-217ENST00000479161 APLP2Q06481 763 aa24.34■■□□□ 1.49
C9orf3-217ENST00000479161 NCOA2Q15596 1464 aa24.33■■□□□ 1.49
C9orf3-217ENST00000479161 ZNF518AQ6AHZ1 1483 aa24.33■■□□□ 1.49
C9orf3-217ENST00000479161 ABCC1P33527 1531 aa24.33■■□□□ 1.49
C9orf3-217ENST00000479161 PLEKHH2Q8IVE3 1493 aa24.32■■□□□ 1.48
C9orf3-217ENST00000479161 CFDP1Q9UEE9 299 aaPredicted RBP24.32■■□□□ 1.48
C9orf3-217ENST00000479161 KIAA1107Q9UPP5 1409 aa24.32■■□□□ 1.48
C9orf3-217ENST00000479161 KDM5CP41229 1560 aa24.3■■□□□ 1.48
C9orf3-217ENST00000479161 KANK4Q5T7N3 995 aaPredicted RBP24.28■■□□□ 1.48
C9orf3-217ENST00000479161 SAMD9LQ8IVG5 1584 aa24.28■■□□□ 1.48
C9orf3-217ENST00000479161 ARHGEF40Q8TER5 1519 aa24.26■■□□□ 1.47
C9orf3-217ENST00000479161 ARHGEF12Q9NZN5 1544 aa24.25■■□□□ 1.47
C9orf3-217ENST00000479161 MLH3Q9UHC1 1453 aa24.25■■□□□ 1.47
C9orf3-217ENST00000479161 KDM4FA0A1W2PPD8 638 aa24.24■■□□□ 1.47
C9orf3-217ENST00000479161 ZFYVE16Q7Z3T8 1539 aa24.23■■□□□ 1.47
C9orf3-217ENST00000479161 AFAP1Q8N556 730 aa24.21■■□□□ 1.47
C9orf3-217ENST00000479161 MIA2Q96PC5 1412 aa24.2■■□□□ 1.46
C9orf3-217ENST00000479161 TRAPPC8Q9Y2L5 1435 aa24.2■■□□□ 1.46
C9orf3-217ENST00000479161 RSPH4AQ5TD94 716 aa24.19■■□□□ 1.46
C9orf3-217ENST00000479161 ZNF777Q9ULD5 760 aaPredicted RBP24.19■■□□□ 1.46
C9orf3-217ENST00000479161 HECW2Q9P2P5 1572 aa24.19■■□□□ 1.46
C9orf3-217ENST00000479161 SYCP2Q9BX26 1530 aa24.18■■□□□ 1.46
C9orf3-217ENST00000479161 MBD5Q9P267 1494 aa24.17■■□□□ 1.46
C9orf3-217ENST00000479161 MYOM3Q5VTT5 1437 aa24.17■■□□□ 1.46
C9orf3-217ENST00000479161 YEATS2Q9ULM3 1422 aa24.17■■□□□ 1.46
C9orf3-217ENST00000479161 ATP10AO60312 1499 aa24.16■■□□□ 1.46
C9orf3-217ENST00000479161 REREQ9P2R6 1566 aa24.15■■□□□ 1.46
C9orf3-217ENST00000479161 HNRNPMP52272 730 aaKnown RBP eCLIP24.14■■□□□ 1.456e-7■■■□□ 18.3
C9orf3-217ENST00000479161 KIDINS220Q9ULH0 1771 aa24.12■■□□□ 1.45
C9orf3-217ENST00000479161 CAMSAP2Q08AD1 1489 aa24.12■■□□□ 1.45
C9orf3-217ENST00000479161 ZNF644Q9H582 1327 aaPredicted RBP24.11■■□□□ 1.45
C9orf3-217ENST00000479161 C9orf84Q5VXU9 1444 aa24.11■■□□□ 1.45
C9orf3-217ENST00000479161 ARHGEF5Q12774 1597 aa24.11■■□□□ 1.45
C9orf3-217ENST00000479161 RTEL1-TNFRSF6BF6WH68 1400 aa24.1■■□□□ 1.45
C9orf3-217ENST00000479161 DIP2CQ9Y2E4 1556 aa24.09■■□□□ 1.45
C9orf3-217ENST00000479161 SPAG9O60271 1321 aaKnown RBP24.09■■□□□ 1.45
C9orf3-217ENST00000479161 INO80Q9ULG1 1556 aaPredicted RBP24.08■■□□□ 1.44
C9orf3-217ENST00000479161 BCORL1Q5H9F3 1711 aa24.07■■□□□ 1.44
C9orf3-217ENST00000479161 CCDC141Q6ZP82 1450 aa24.07■■□□□ 1.44
C9orf3-217ENST00000479161 ADAMTSL3P82987 1691 aa24.06■■□□□ 1.44
C9orf3-217ENST00000479161 ABCA6Q8N139 1617 aa24.06■■□□□ 1.44
C9orf3-217ENST00000479161 ATP7AQ04656 1500 aa24.05■■□□□ 1.44
C9orf3-217ENST00000479161 AGLP35573 1532 aa24.05■■□□□ 1.44
C9orf3-217ENST00000479161 SIGLEC1Q9BZZ2 1709 aa24.02■■□□□ 1.44
C9orf3-217ENST00000479161 FGD6Q6ZV73 1430 aa24.01■■□□□ 1.43
C9orf3-217ENST00000479161 TCOF1Q13428 1488 aaKnown RBP24.01■■□□□ 1.43
C9orf3-217ENST00000479161 MYT1LQ9UL68 1186 aa24.01■■□□□ 1.43
C9orf3-217ENST00000479161 ARID4BQ4LE39 1312 aaPredicted RBP24.01■■□□□ 1.43
C9orf3-217ENST00000479161 PTPN23Q9H3S7 1636 aa23.99■■□□□ 1.43
C9orf3-217ENST00000479161 TSPY4P0CV99 314 aa23.98■■□□□ 1.43
C9orf3-217ENST00000479161 TSPY10P0CW01 314 aa23.98■■□□□ 1.43
C9orf3-217ENST00000479161 MAST1Q9Y2H9 1570 aa23.98■■□□□ 1.43
C9orf3-217ENST00000479161 ADGBQ8N7X0 1667 aa23.98■■□□□ 1.43
C9orf3-217ENST00000479161 PLXNC1O60486 1568 aa23.95■■□□□ 1.43
C9orf3-217ENST00000479161 A2MP01023 1474 aa23.94■■□□□ 1.42
C9orf3-217ENST00000479161 SHANK2Q9UPX8 1470 aa23.92■■□□□ 1.42
C9orf3-217ENST00000479161 MADDQ8WXG6 1647 aa23.91■■□□□ 1.42
C9orf3-217ENST00000479161 DHX29Q7Z478 1369 aaKnown RBP23.91■■□□□ 1.42
C9orf3-217ENST00000479161 DNMT1P26358 1616 aaKnown RBP23.89■■□□□ 1.42
C9orf3-217ENST00000479161 PTPRMP28827 1452 aa23.88■■□□□ 1.41
C9orf3-217ENST00000479161 ABCC5O15440 1437 aa23.88■■□□□ 1.41
C9orf3-217ENST00000479161 PPP6R1Q9UPN7 881 aa23.88■■□□□ 1.41
C9orf3-217ENST00000479161 CROCC2H7BZ55 1655 aa23.88■■□□□ 1.41
C9orf3-217ENST00000479161 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.88■■□□□ 1.416e-10■■■■■ 31.3
C9orf3-217ENST00000479161 FER1L4A9Z1Z3 1794 aa23.87■■□□□ 1.41
C9orf3-217ENST00000479161 DAPK1P53355 1430 aa23.85■■□□□ 1.41
C9orf3-217ENST00000479161 RIMS1Q86UR5 1692 aaKnown RBP23.83■■□□□ 1.4
C9orf3-217ENST00000479161 CNTLNQ9NXG0 1405 aa23.82■■□□□ 1.4
C9orf3-217ENST00000479161 MLECQ14165 292 aa23.81■■□□□ 1.4
C9orf3-217ENST00000479161 FAM135AQ9P2D6 1515 aa23.79■■□□□ 1.4
C9orf3-217ENST00000479161 DUOX2Q9NRD8 1548 aa23.78■■□□□ 1.4
C9orf3-217ENST00000479161 EIF2AK4Q9P2K8 1649 aaKnown RBP23.77■■□□□ 1.4
C9orf3-217ENST00000479161 ADGRL2O95490 1459 aa23.77■■□□□ 1.4
C9orf3-217ENST00000479161 SETD1BQ9UPS6 1966 aaKnown RBP23.77■■□□□ 1.4
C9orf3-217ENST00000479161 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
C9orf3-217ENST00000479161 FAM50AQ14320 339 aaKnown RBP23.75■■□□□ 1.39
C9orf3-217ENST00000479161 ANKRD30AQ9BXX3 1397 aa23.75■■□□□ 1.39
C9orf3-217ENST00000479161 NCOA1Q15788 1441 aa23.75■■□□□ 1.39
C9orf3-217ENST00000479161 RRBP1Q9P2E9 1410 aaKnown RBP23.75■■□□□ 1.39
C9orf3-217ENST00000479161 ESF1Q9H501 851 aaKnown RBP23.73■■□□□ 1.39
C9orf3-217ENST00000479161 KIF15Q9NS87 1388 aa23.72■■□□□ 1.39
C9orf3-217ENST00000479161 ERBINQ96RT1 1412 aa23.72■■□□□ 1.39
C9orf3-217ENST00000479161 RNF17Q9BXT8 1623 aaKnown RBP23.71■■□□□ 1.39
C9orf3-217ENST00000479161 KIF3BO15066 747 aa23.71■■□□□ 1.39
C9orf3-217ENST00000479161 GGT6Q6P531 493 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms