RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 AEBP2Q6ZN18 517 aaPredicted RBP24.71■■□□□ 1.55
HMGA1-206ENST00000478214 EHBP1L1Q8N3D4 1523 aa24.69■■□□□ 1.54
HMGA1-206ENST00000478214 RICTORQ6R327 1708 aa24.69■■□□□ 1.54
HMGA1-206ENST00000478214 PREX2Q70Z35 1606 aa24.68■■□□□ 1.54
HMGA1-206ENST00000478214 CDC42BPBQ9Y5S2 1711 aa24.68■■□□□ 1.54
HMGA1-206ENST00000478214 GPATCH8Q9UKJ3 1502 aaKnown RBP24.67■■□□□ 1.54
HMGA1-206ENST00000478214 POGZQ7Z3K3 1410 aa24.67■■□□□ 1.54
HMGA1-206ENST00000478214 TIAM1Q13009 1591 aa24.67■■□□□ 1.54
HMGA1-206ENST00000478214 CCNB3Q8WWL7 1395 aa24.66■■□□□ 1.54
HMGA1-206ENST00000478214 CDC42BPAQ5VT25 1732 aa24.64■■□□□ 1.54
HMGA1-206ENST00000478214 ZNF777Q9ULD5 760 aaPredicted RBP24.63■■□□□ 1.53
HMGA1-206ENST00000478214 ZMYM4Q5VZL5 1548 aa24.62■■□□□ 1.53
HMGA1-206ENST00000478214 AFAP1Q8N556 730 aa24.61■■□□□ 1.53
HMGA1-206ENST00000478214 CFDP1Q9UEE9 299 aaPredicted RBP24.61■■□□□ 1.53
HMGA1-206ENST00000478214 KANK4Q5T7N3 995 aaPredicted RBP24.59■■□□□ 1.53
HMGA1-206ENST00000478214 ARHGEF12Q9NZN5 1544 aa24.59■■□□□ 1.53
HMGA1-206ENST00000478214 YEATS2Q9ULM3 1422 aa24.59■■□□□ 1.53
HMGA1-206ENST00000478214 LRRC9Q6ZRR7 1453 aa24.58■■□□□ 1.53
HMGA1-206ENST00000478214 ABCC1P33527 1531 aa24.58■■□□□ 1.53
HMGA1-206ENST00000478214 ZNF518AQ6AHZ1 1483 aa24.58■■□□□ 1.52
HMGA1-206ENST00000478214 MAGI2Q86UL8 1455 aa24.58■■□□□ 1.52
HMGA1-206ENST00000478214 MAP3K1Q13233 1512 aa24.57■■□□□ 1.52
HMGA1-206ENST00000478214 ARHGEF40Q8TER5 1519 aa24.57■■□□□ 1.52
HMGA1-206ENST00000478214 TRAPPC8Q9Y2L5 1435 aa24.57■■□□□ 1.52
HMGA1-206ENST00000478214 NCOA2Q15596 1464 aa24.57■■□□□ 1.52
HMGA1-206ENST00000478214 ZFYVE16Q7Z3T8 1539 aa24.56■■□□□ 1.52
HMGA1-206ENST00000478214 SAMD9LQ8IVG5 1584 aa24.54■■□□□ 1.52
HMGA1-206ENST00000478214 APLP2Q06481 763 aa24.53■■□□□ 1.52
HMGA1-206ENST00000478214 SUPT6HQ7KZ85 1726 aaKnown RBP24.52■■□□□ 1.52
HMGA1-206ENST00000478214 KDM5CP41229 1560 aa24.52■■□□□ 1.52
HMGA1-206ENST00000478214 HNRNPMP52272 730 aaKnown RBP eCLIP24.52■■□□□ 1.52
HMGA1-206ENST00000478214 ARID4BQ4LE39 1312 aaPredicted RBP24.52■■□□□ 1.52
HMGA1-206ENST00000478214 ZNF644Q9H582 1327 aaPredicted RBP24.51■■□□□ 1.51
HMGA1-206ENST00000478214 ITSN2Q9NZM3 1697 aa24.5■■□□□ 1.51
HMGA1-206ENST00000478214 MYT1LQ9UL68 1186 aa24.5■■□□□ 1.51
HMGA1-206ENST00000478214 SYCP2Q9BX26 1530 aa24.5■■□□□ 1.51
HMGA1-206ENST00000478214 PLEKHH2Q8IVE3 1493 aa24.48■■□□□ 1.51
HMGA1-206ENST00000478214 KIAA1107Q9UPP5 1409 aa24.48■■□□□ 1.51
HMGA1-206ENST00000478214 ATP10AO60312 1499 aa24.46■■□□□ 1.51
HMGA1-206ENST00000478214 MLH3Q9UHC1 1453 aa24.46■■□□□ 1.51
HMGA1-206ENST00000478214 HECW2Q9P2P5 1572 aa24.45■■□□□ 1.5
HMGA1-206ENST00000478214 C9orf84Q5VXU9 1444 aa24.42■■□□□ 1.5
HMGA1-206ENST00000478214 SPAG9O60271 1321 aaKnown RBP24.41■■□□□ 1.5
HMGA1-206ENST00000478214 SIGLEC1Q9BZZ2 1709 aa24.4■■□□□ 1.5
HMGA1-206ENST00000478214 MBD5Q9P267 1494 aa24.39■■□□□ 1.5
HMGA1-206ENST00000478214 DIP2CQ9Y2E4 1556 aa24.39■■□□□ 1.5
HMGA1-206ENST00000478214 BCORL1Q5H9F3 1711 aa24.38■■□□□ 1.49
HMGA1-206ENST00000478214 CAMSAP2Q08AD1 1489 aa24.38■■□□□ 1.49
HMGA1-206ENST00000478214 ADAMTSL3P82987 1691 aa24.37■■□□□ 1.49
HMGA1-206ENST00000478214 ABCA6Q8N139 1617 aa24.37■■□□□ 1.49
HMGA1-206ENST00000478214 MLECQ14165 292 aa24.37■■□□□ 1.49
HMGA1-206ENST00000478214 KIDINS220Q9ULH0 1771 aa24.37■■□□□ 1.49
HMGA1-206ENST00000478214 MYOM3Q5VTT5 1437 aa24.35■■□□□ 1.49
HMGA1-206ENST00000478214 MADDQ8WXG6 1647 aa24.32■■□□□ 1.48
HMGA1-206ENST00000478214 ATP7AQ04656 1500 aa24.31■■□□□ 1.48
HMGA1-206ENST00000478214 MIA2Q96PC5 1412 aa24.31■■□□□ 1.48
HMGA1-206ENST00000478214 REREQ9P2R6 1566 aa24.31■■□□□ 1.48
HMGA1-206ENST00000478214 INO80Q9ULG1 1556 aaPredicted RBP24.29■■□□□ 1.48
HMGA1-206ENST00000478214 RSPH4AQ5TD94 716 aa24.29■■□□□ 1.48
HMGA1-206ENST00000478214 PTPRMP28827 1452 aa24.29■■□□□ 1.48
HMGA1-206ENST00000478214 CCDC141Q6ZP82 1450 aa24.29■■□□□ 1.48
HMGA1-206ENST00000478214 AGLP35573 1532 aa24.25■■□□□ 1.47
HMGA1-206ENST00000478214 RTEL1-TNFRSF6BF6WH68 1400 aa24.25■■□□□ 1.47
HMGA1-206ENST00000478214 ARHGEF5Q12774 1597 aa24.24■■□□□ 1.47
HMGA1-206ENST00000478214 RIMS1Q86UR5 1692 aaKnown RBP24.23■■□□□ 1.47
HMGA1-206ENST00000478214 A2MP01023 1474 aa24.22■■□□□ 1.47
HMGA1-206ENST00000478214 TSPY4P0CV99 314 aa24.22■■□□□ 1.47
HMGA1-206ENST00000478214 TSPY10P0CW01 314 aa24.22■■□□□ 1.47
HMGA1-206ENST00000478214 FGD6Q6ZV73 1430 aa24.21■■□□□ 1.47
HMGA1-206ENST00000478214 PLPPR3Q6T4P5 718 aa24.19■■□□□ 1.46
HMGA1-206ENST00000478214 PTPN23Q9H3S7 1636 aa24.17■■□□□ 1.46
HMGA1-206ENST00000478214 PLXNC1O60486 1568 aa24.17■■□□□ 1.46
HMGA1-206ENST00000478214 PPARGC1BQ86YN6 1023 aaKnown RBP24.17■■□□□ 1.46
HMGA1-206ENST00000478214 FER1L4A9Z1Z3 1794 aa24.16■■□□□ 1.46
HMGA1-206ENST00000478214 DHX29Q7Z478 1369 aaKnown RBP24.15■■□□□ 1.46
HMGA1-206ENST00000478214 TCOF1Q13428 1488 aaKnown RBP24.14■■□□□ 1.46
HMGA1-206ENST00000478214 ADGBQ8N7X0 1667 aa24.14■■□□□ 1.45
HMGA1-206ENST00000478214 ESF1Q9H501 851 aaKnown RBP24.12■■□□□ 1.45
HMGA1-206ENST00000478214 ABCC5O15440 1437 aa24.11■■□□□ 1.45
HMGA1-206ENST00000478214 CEBPAP49715 358 aaPredicted RBP24.11■■□□□ 1.45
HMGA1-206ENST00000478214 MAST1Q9Y2H9 1570 aa24.11■■□□□ 1.45
HMGA1-206ENST00000478214 GGT6Q6P531 493 aa24.1■■□□□ 1.45
HMGA1-206ENST00000478214 FAM50AQ14320 339 aaKnown RBP24.08■■□□□ 1.45
HMGA1-206ENST00000478214 KIF3BO15066 747 aa24.07■■□□□ 1.44
HMGA1-206ENST00000478214 DAPK1P53355 1430 aa24.07■■□□□ 1.44
HMGA1-206ENST00000478214 CNTLNQ9NXG0 1405 aa24.05■■□□□ 1.44
HMGA1-206ENST00000478214 SHANK2Q9UPX8 1470 aa24.05■■□□□ 1.44
HMGA1-206ENST00000478214 DNMT1P26358 1616 aaKnown RBP24.04■■□□□ 1.44
HMGA1-206ENST00000478214 CHIC2Q9UKJ5 165 aa24.02■■□□□ 1.44
HMGA1-206ENST00000478214 CROCC2H7BZ55 1655 aa24■■□□□ 1.43
HMGA1-206ENST00000478214 RRP7BPQ9NSQ0 103 aa24■■□□□ 1.43
HMGA1-206ENST00000478214 PPP6R1Q9UPN7 881 aa24■■□□□ 1.43
HMGA1-206ENST00000478214 KIF15Q9NS87 1388 aa24■■□□□ 1.43
HMGA1-206ENST00000478214 ZMYM3Q14202 1370 aa23.99■■□□□ 1.43
HMGA1-206ENST00000478214 LMTK3Q96Q04 1460 aa23.98■■□□□ 1.43
HMGA1-206ENST00000478214 C3P01024 1663 aa23.97■■□□□ 1.43
HMGA1-206ENST00000478214 DUOX2Q9NRD8 1548 aa23.96■■□□□ 1.43
HMGA1-206ENST00000478214 CLTCQ00610 1675 aaKnown RBP23.95■■□□□ 1.42
HMGA1-206ENST00000478214 ANKRD30AQ9BXX3 1397 aa23.94■■□□□ 1.42
HMGA1-206ENST00000478214 NCOA1Q15788 1441 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms