RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 NKX1-1Q15270 411 aaPredicted RBP12.38□□□□□ -0.43
UBR3-209ENST00000477461 DOK7Q18PE1 504 aa12.37□□□□□ -0.43
UBR3-209ENST00000477461 PCDH10Q9P2E7 1040 aa12.37□□□□□ -0.43
UBR3-209ENST00000477461 C2orf72A6NCS6 295 aa12.34□□□□□ -0.43
UBR3-209ENST00000477461 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
UBR3-209ENST00000477461 POTEB3A0JP26 581 aa12.3□□□□□ -0.44
UBR3-209ENST00000477461 RIMBP2O15034 1052 aa12.3□□□□□ -0.44
UBR3-209ENST00000477461 POTEBQ6S5H4 581 aa12.3□□□□□ -0.44
UBR3-209ENST00000477461 HOXB1P14653 301 aaPredicted RBP12.29□□□□□ -0.44
UBR3-209ENST00000477461 TMC2Q8TDI7 906 aa12.29□□□□□ -0.44
UBR3-209ENST00000477461 HS3ST6Q96QI5 342 aa12.28□□□□□ -0.44
UBR3-209ENST00000477461 KIF3CO14782 793 aa12.27□□□□□ -0.45
UBR3-209ENST00000477461 ARSIQ5FYB1 569 aa12.26□□□□□ -0.45
UBR3-209ENST00000477461 KHSRPQ92945 711 aaKnown RBP eCLIP12.26□□□□□ -0.454e-14■■■□□ 15.7
UBR3-209ENST00000477461 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
UBR3-209ENST00000477461 ERBB3P21860 1342 aa12.24□□□□□ -0.45
UBR3-209ENST00000477461 GPR153Q6NV75 609 aa12.24□□□□□ -0.45
UBR3-209ENST00000477461 GTPBP6O43824 516 aaPredicted RBP12.2□□□□□ -0.46
UBR3-209ENST00000477461 RTN4Q9NQC3 1192 aaKnown RBP12.2□□□□□ -0.46
UBR3-209ENST00000477461 ZSWIM6Q9HCJ5 1215 aa12.19□□□□□ -0.46
UBR3-209ENST00000477461 VARS2Q5ST30 1063 aaKnown RBP12.18□□□□□ -0.46
UBR3-209ENST00000477461 RYDENQ9NUL5 291 aaKnown RBP12.18□□□□□ -0.46
UBR3-209ENST00000477461 AMER1Q5JTC6 1135 aaPredicted RBP12.15□□□□□ -0.46
UBR3-209ENST00000477461 PLPP6Q8IY26 295 aa12.14□□□□□ -0.47
UBR3-209ENST00000477461 GPHNQ9NQX3 736 aaPredicted RBP12.14□□□□□ -0.47
UBR3-209ENST00000477461 NUDT7P0C024 238 aa12.13□□□□□ -0.47
UBR3-209ENST00000477461 DSG2Q14126 1118 aa12.13□□□□□ -0.47
UBR3-209ENST00000477461 KRTAP3-3Q9BYR6 98 aa12.12□□□□□ -0.47
UBR3-209ENST00000477461 KRTAP3-2Q9BYR7 98 aa12.12□□□□□ -0.47
UBR3-209ENST00000477461 PCDHGA4Q9Y5G9 962 aa12.12□□□□□ -0.47
UBR3-209ENST00000477461 FOXK1P85037 733 aa12.1□□□□□ -0.47
UBR3-209ENST00000477461 SPNS2Q8IVW8 549 aa12.09□□□□□ -0.47
UBR3-209ENST00000477461 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
UBR3-209ENST00000477461 SLC34A2O95436 690 aa12.08□□□□□ -0.48
UBR3-209ENST00000477461 LHX6Q9UPM6 363 aa12.05□□□□□ -0.48
UBR3-209ENST00000477461 ZNF687Q8N1G0 1237 aa12.04□□□□□ -0.48
UBR3-209ENST00000477461 CRISPLD2Q9H0B8 497 aa12.04□□□□□ -0.48
UBR3-209ENST00000477461 NCKAP5LQ9HCH0 1330 aa12.04□□□□□ -0.48
UBR3-209ENST00000477461 PDE4AP27815 886 aa12.03□□□□□ -0.48
UBR3-209ENST00000477461 LARP6Q9BRS8 491 aaKnown RBP12.03□□□□□ -0.48
UBR3-209ENST00000477461 BBXQ8WY36 941 aaPredicted RBP12.02□□□□□ -0.49
UBR3-209ENST00000477461 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.49
UBR3-209ENST00000477461 MMRN1Q13201 1228 aa12.01□□□□□ -0.49
UBR3-209ENST00000477461 PPP1R15BQ5SWA1 713 aa12.01□□□□□ -0.49
UBR3-209ENST00000477461 PTCD2Q8WV60 388 aaKnown RBP12.01□□□□□ -0.49
UBR3-209ENST00000477461 CADPS2Q86UW7 1296 aa12□□□□□ -0.49
UBR3-209ENST00000477461 TBC1D12O60347 775 aa11.96□□□□□ -0.49
UBR3-209ENST00000477461 AXIN2Q9Y2T1 843 aa11.95□□□□□ -0.5
UBR3-209ENST00000477461 ANKRD13DQ6ZTN6 518 aa11.94□□□□□ -0.5
UBR3-209ENST00000477461 DDX27Q96GQ7 796 aaKnown RBP11.94□□□□□ -0.5
UBR3-209ENST00000477461 KDM4FA0A1W2PPD8 638 aa11.93□□□□□ -0.5
UBR3-209ENST00000477461 SPRYD3Q8NCJ5 442 aa11.92□□□□□ -0.5
UBR3-209ENST00000477461 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
UBR3-209ENST00000477461 CFAP44Q96MT7 982 aa11.92□□□□□ -0.5
UBR3-209ENST00000477461 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
UBR3-209ENST00000477461 POTEEQ6S8J3 1075 aa11.9□□□□□ -0.5
UBR3-209ENST00000477461 PAXIP1Q6ZW49 1069 aaPredicted RBP11.9□□□□□ -0.5
UBR3-209ENST00000477461 LSM11P83369 360 aaKnown RBP eCLIP11.86□□□□□ -0.51
UBR3-209ENST00000477461 MFSD10Q14728 455 aa11.86□□□□□ -0.51
UBR3-209ENST00000477461 MAP3K9P80192 1104 aa11.84□□□□□ -0.51
UBR3-209ENST00000477461 EMILIN3Q9NT22 766 aa11.84□□□□□ -0.51
UBR3-209ENST00000477461 PSDA5PKW4 1024 aaPredicted RBP11.82□□□□□ -0.52
UBR3-209ENST00000477461 PSEN2P49810 448 aa11.82□□□□□ -0.52
UBR3-209ENST00000477461 PPP4R3BQ5MIZ7 849 aa11.82□□□□□ -0.52
UBR3-209ENST00000477461 ARHGAP33O14559 1287 aa11.81□□□□□ -0.52
UBR3-209ENST00000477461 EVI5O60447 810 aa11.81□□□□□ -0.52
UBR3-209ENST00000477461 PBX2P40425 430 aa11.81□□□□□ -0.52
UBR3-209ENST00000477461 ZNF454Q8N9F8 522 aa11.81□□□□□ -0.52
UBR3-209ENST00000477461 MYT1LQ9UL68 1186 aa11.8□□□□□ -0.52
UBR3-209ENST00000477461 DMRTA1Q5VZB9 504 aa11.78□□□□□ -0.52
UBR3-209ENST00000477461 RNF166Q96A37 237 aaPredicted RBP11.77□□□□□ -0.53
UBR3-209ENST00000477461 KCNK17Q96T54 332 aa11.76□□□□□ -0.53
UBR3-209ENST00000477461 ANO8Q9HCE9 1232 aaPredicted RBP11.75□□□□□ -0.53
UBR3-209ENST00000477461 DPYSL4O14531 572 aa11.72□□□□□ -0.53
UBR3-209ENST00000477461 FOSBP53539 338 aa11.72□□□□□ -0.53
UBR3-209ENST00000477461 ADGRD1Q6QNK2 874 aa11.71□□□□□ -0.53
UBR3-209ENST00000477461 CAMK2BQ13554 666 aa11.69□□□□□ -0.54
UBR3-209ENST00000477461 KCNH8Q96L42 1107 aa11.68□□□□□ -0.54
UBR3-209ENST00000477461 PTGER2P43116 358 aa11.67□□□□□ -0.54
UBR3-209ENST00000477461 ZDHHC16Q969W1 377 aa11.67□□□□□ -0.54
UBR3-209ENST00000477461 JPH4Q96JJ6 628 aa11.67□□□□□ -0.54
UBR3-209ENST00000477461 ADAM33Q9BZ11 813 aa11.67□□□□□ -0.54
UBR3-209ENST00000477461 BCL2L12Q9HB09 334 aa11.66□□□□□ -0.54
UBR3-209ENST00000477461 WDR70Q9NW82 654 aa11.66□□□□□ -0.54
UBR3-209ENST00000477461 PCDHGA10Q9Y5H3 936 aa11.65□□□□□ -0.54
UBR3-209ENST00000477461 PTPREP23469 700 aa11.64□□□□□ -0.55
UBR3-209ENST00000477461 TSHZ2Q9NRE2 1034 aa11.64□□□□□ -0.55
UBR3-209ENST00000477461 TK2O00142 265 aa11.63□□□□□ -0.55
UBR3-209ENST00000477461 DDX12PQ92771 950 aa11.62□□□□□ -0.55
UBR3-209ENST00000477461 STAC3Q96MF2 364 aa11.62□□□□□ -0.55
UBR3-209ENST00000477461 HRO43593 1189 aa11.61□□□□□ -0.55
UBR3-209ENST00000477461 E2F4Q16254 413 aa11.61□□□□□ -0.55
UBR3-209ENST00000477461 VPS9D1Q9Y2B5 631 aa11.61□□□□□ -0.55
UBR3-209ENST00000477461 PHF14O94880 888 aa11.58□□□□□ -0.56
UBR3-209ENST00000477461 RBM33Q96EV2 1170 aaKnown RBP11.58□□□□□ -0.56
UBR3-209ENST00000477461 TYW1BQ6NUM6 668 aa11.57□□□□□ -0.56
UBR3-209ENST00000477461 ZBED2Q9BTP6 218 aa11.56□□□□□ -0.56
UBR3-209ENST00000477461 COL9A1P20849 921 aa11.55□□□□□ -0.56
UBR3-209ENST00000477461 KCTD12Q96CX2 325 aaKnown RBP11.55□□□□□ -0.56
UBR3-209ENST00000477461 FBXW7Q969H0 707 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms