RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 STK26Q9P289 416 aa23.73■■□□□ 1.39
VARS2-209ENST00000477288 NOP58Q9Y2X3 529 aaKnown RBP23.73■■□□□ 1.39
VARS2-209ENST00000477288 CARMIL1Q5VZK9 1371 aa23.72■■□□□ 1.39
VARS2-209ENST00000477288 MROH2BQ7Z745 1585 aa23.71■■□□□ 1.39
VARS2-209ENST00000477288 PAK3O75914 559 aaPredicted RBP23.71■■□□□ 1.39
VARS2-209ENST00000477288 CHAF1AQ13111 956 aaPredicted RBP23.71■■□□□ 1.39
VARS2-209ENST00000477288 EIF4G1Q04637 1599 aaKnown RBP23.71■■□□□ 1.39
VARS2-209ENST00000477288 SOGA1O94964 1423 aa23.7■■□□□ 1.38
VARS2-209ENST00000477288 ZNF330Q9Y3S2 320 aaPredicted RBP23.7■■□□□ 1.38
VARS2-209ENST00000477288 AMER1Q5JTC6 1135 aaPredicted RBP23.7■■□□□ 1.38
VARS2-209ENST00000477288 GGT6Q6P531 493 aa23.7■■□□□ 1.38
VARS2-209ENST00000477288 CUX2O14529 1486 aa23.69■■□□□ 1.38
VARS2-209ENST00000477288 GNL2Q13823 731 aaKnown RBP23.68■■□□□ 1.38
VARS2-209ENST00000477288 CSB-PGBD3P0DP91 1061 aa23.68■■□□□ 1.38
VARS2-209ENST00000477288 MCCP23508 829 aa23.68■■□□□ 1.38
VARS2-209ENST00000477288 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
VARS2-209ENST00000477288 B4GALNT3Q6L9W6 998 aa23.67■■□□□ 1.38
VARS2-209ENST00000477288 APBB1O00213 710 aa23.66■■□□□ 1.38
VARS2-209ENST00000477288 CCDC88BA6NC98 1476 aa23.65■■□□□ 1.38
VARS2-209ENST00000477288 MSNP26038 577 aaKnown RBP23.63■■□□□ 1.37
VARS2-209ENST00000477288 HDGFL2Q7Z4V5 671 aaPredicted RBP23.62■■□□□ 1.37
VARS2-209ENST00000477288 CCDC9Q9Y3X0 531 aaKnown RBP23.6■■□□□ 1.37
VARS2-209ENST00000477288 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
VARS2-209ENST00000477288 TMX4Q9H1E5 349 aaPredicted RBP23.56■■□□□ 1.36
VARS2-209ENST00000477288 L1TD1Q5T7N2 865 aaKnown RBP23.54■■□□□ 1.36
VARS2-209ENST00000477288 KIAA2012Q0VF49 1180 aa23.54■■□□□ 1.36
VARS2-209ENST00000477288 KIAA1211Q6ZU35 1233 aa23.53■■□□□ 1.36
VARS2-209ENST00000477288 PRM3Q9NNZ6 103 aa23.52■■□□□ 1.36
VARS2-209ENST00000477288 NOC3LQ8WTT2 800 aaKnown RBP23.51■■□□□ 1.35
VARS2-209ENST00000477288 PDE4CQ08493 712 aa23.48■■□□□ 1.35
VARS2-209ENST00000477288 IPO8O15397 1037 aaKnown RBP23.47■■□□□ 1.35
VARS2-209ENST00000477288 CHMP3Q9Y3E7 222 aa23.47■■□□□ 1.35
VARS2-209ENST00000477288 U2AF1L5P0DN76 240 aaPredicted RBP23.47■■□□□ 1.35
VARS2-209ENST00000477288 U2AF1Q01081 240 aaKnown RBP eCLIP23.47■■□□□ 1.35
VARS2-209ENST00000477288 ABCC8Q09428 1581 aa23.47■■□□□ 1.35
VARS2-209ENST00000477288 PDS5BQ9NTI5 1447 aa23.46■■□□□ 1.35
VARS2-209ENST00000477288 VPS8Q8N3P4 1428 aa23.46■■□□□ 1.35
VARS2-209ENST00000477288 ARID3AQ99856 593 aa23.46■■□□□ 1.35
VARS2-209ENST00000477288 CFAP44Q96MT7 982 aa23.45■■□□□ 1.35
VARS2-209ENST00000477288 PKD2Q13563 968 aa23.45■■□□□ 1.34
VARS2-209ENST00000477288 GORABQ5T7V8 394 aa23.45■■□□□ 1.34
VARS2-209ENST00000477288 ITPRIPQ8IWB1 547 aa23.43■■□□□ 1.34
VARS2-209ENST00000477288 KTN1Q86UP2 1357 aaKnown RBP23.43■■□□□ 1.34
VARS2-209ENST00000477288 TAF7LQ5H9L4 462 aa23.42■■□□□ 1.34
VARS2-209ENST00000477288 FOXD1Q16676 465 aa23.42■■□□□ 1.34
VARS2-209ENST00000477288 CALD1Q05682 793 aaKnown RBP23.42■■□□□ 1.34
VARS2-209ENST00000477288 G3V3G9 751 aa23.41■■□□□ 1.34
VARS2-209ENST00000477288 DCAF8Q5TAQ9 597 aa23.41■■□□□ 1.34
VARS2-209ENST00000477288 HSPA5P11021 654 aaKnown RBP23.41■■□□□ 1.34
VARS2-209ENST00000477288 HSP90B1P14625 803 aaKnown RBP23.4■■□□□ 1.34
VARS2-209ENST00000477288 GZF1Q9H116 711 aaPredicted RBP23.4■■□□□ 1.34
VARS2-209ENST00000477288 TDRD9Q8NDG6 1382 aaKnown RBP23.37■■□□□ 1.33
VARS2-209ENST00000477288 STK31Q9BXU1 1019 aa23.37■■□□□ 1.33
VARS2-209ENST00000477288 TIMELESSQ9UNS1 1208 aa23.37■■□□□ 1.33
VARS2-209ENST00000477288 SPAG9O60271 1321 aaKnown RBP23.36■■□□□ 1.33
VARS2-209ENST00000477288 ROCK2O75116 1388 aaKnown RBP23.36■■□□□ 1.33
VARS2-209ENST00000477288 TOP2AP11388 1531 aaKnown RBP23.36■■□□□ 1.33
VARS2-209ENST00000477288 DEKP35659 375 aaKnown RBP23.35■■□□□ 1.33
VARS2-209ENST00000477288 GBP4Q96PP9 640 aa23.34■■□□□ 1.33
VARS2-209ENST00000477288 KANK4Q5T7N3 995 aaPredicted RBP23.34■■□□□ 1.33
VARS2-209ENST00000477288 NUTM2DQ5VT03 806 aaPredicted RBP23.33■■□□□ 1.33
VARS2-209ENST00000477288 CREBRFQ8IUR6 639 aa23.32■■□□□ 1.32
VARS2-209ENST00000477288 SLKQ9H2G2 1235 aaPredicted RBP23.32■■□□□ 1.32
VARS2-209ENST00000477288 HTATSF1O43719 755 aaKnown RBP23.32■■□□□ 1.32
VARS2-209ENST00000477288 EID1Q9Y6B2 187 aa23.31■■□□□ 1.32
VARS2-209ENST00000477288 A0A0U1RQG5 324 aaPredicted RBP23.31■■□□□ 1.32
VARS2-209ENST00000477288 NGDNQ8NEJ9 315 aaKnown RBP23.31■■□□□ 1.32
VARS2-209ENST00000477288 GPATCH3Q96I76 525 aa23.31■■□□□ 1.32
VARS2-209ENST00000477288 RWDD1Q9H446 243 aaPredicted RBP23.31■■□□□ 1.32
VARS2-209ENST00000477288 CARMIL2Q6F5E8 1435 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 RASSF8Q8NHQ8 419 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 WIZO95785 1651 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 TPM4P67936 248 aa23.3■■□□□ 1.32
VARS2-209ENST00000477288 TRIM6-TRIM34B2RNG4 842 aa23.29■■□□□ 1.32
VARS2-209ENST00000477288 LTV1Q96GA3 475 aaPredicted RBP23.29■■□□□ 1.32
VARS2-209ENST00000477288 SETD5Q9C0A6 1442 aa23.29■■□□□ 1.32
VARS2-209ENST00000477288 SLC4A10Q6U841 1118 aa23.28■■□□□ 1.32
VARS2-209ENST00000477288 EFCAB2Q5VUJ9 269 aa23.28■■□□□ 1.32
VARS2-209ENST00000477288 ANO8Q9HCE9 1232 aaPredicted RBP23.27■■□□□ 1.32
VARS2-209ENST00000477288 CHMP4AQ9BY43 222 aa23.27■■□□□ 1.32
VARS2-209ENST00000477288 KIF3BO15066 747 aa23.26■■□□□ 1.31
VARS2-209ENST00000477288 NOL8Q76FK4 1167 aaKnown RBP23.26■■□□□ 1.31
VARS2-209ENST00000477288 FMN1Q68DA7 1419 aa23.26■■□□□ 1.31
VARS2-209ENST00000477288 GTF2E1P29083 439 aaPredicted RBP23.26■■□□□ 1.31
VARS2-209ENST00000477288 NUP155O75694 1391 aa23.26■■□□□ 1.31
VARS2-209ENST00000477288 NUTM2FA1L443 756 aa23.26■■□□□ 1.31
VARS2-209ENST00000477288 FRAT2O75474 233 aaPredicted RBP23.25■■□□□ 1.31
VARS2-209ENST00000477288 MFAP1P55081 439 aaKnown RBP23.25■■□□□ 1.31
VARS2-209ENST00000477288 AMPHP49418 695 aa23.25■■□□□ 1.31
VARS2-209ENST00000477288 SMC4Q9NTJ3 1288 aa23.25■■□□□ 1.31
VARS2-209ENST00000477288 PTMSP20962 102 aa23.24■■□□□ 1.31
VARS2-209ENST00000477288 TERF2IPQ9NYB0 399 aa23.24■■□□□ 1.31
VARS2-209ENST00000477288 RCAN3Q9UKA8 241 aa23.24■■□□□ 1.31
VARS2-209ENST00000477288 EIF3AQ14152 1382 aaKnown RBP23.23■■□□□ 1.31
VARS2-209ENST00000477288 SYAP1Q96A49 352 aaPredicted RBP23.23■■□□□ 1.31
VARS2-209ENST00000477288 TOMM22Q9NS69 142 aa23.23■■□□□ 1.31
VARS2-209ENST00000477288 VPS53Q5VIR6 699 aa23.22■■□□□ 1.31
VARS2-209ENST00000477288 FOXD4L1Q9NU39 408 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms