RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 CDC42BPBQ9Y5S2 1711 aa33.9■■■■□ 3.02
LIME1-204ENST00000476183 PREX2Q70Z35 1606 aa33.86■■■■□ 3.01
LIME1-204ENST00000476183 POGZQ7Z3K3 1410 aa33.86■■■■□ 3.01
LIME1-204ENST00000476183 ZMYM4Q5VZL5 1548 aa33.85■■■■□ 3.01
LIME1-204ENST00000476183 ARHGEF40Q8TER5 1519 aa33.84■■■■□ 3.01
LIME1-204ENST00000476183 CDC42BPAQ5VT25 1732 aa33.83■■■■□ 3.01
LIME1-204ENST00000476183 MTUS2Q5JR59 1369 aa33.8■■■■□ 3
LIME1-204ENST00000476183 VPS8Q8N3P4 1428 aa33.78■■■■□ 3
LIME1-204ENST00000476183 YEATS2Q9ULM3 1422 aa33.77■■■■□ 3
LIME1-204ENST00000476183 ZFYVE16Q7Z3T8 1539 aa33.76■■■■□ 3
LIME1-204ENST00000476183 GPATCH8Q9UKJ3 1502 aaKnown RBP33.75■■■□□ 2.99
LIME1-204ENST00000476183 MAGI2Q86UL8 1455 aa33.75■■■□□ 2.99
LIME1-204ENST00000476183 EHBP1L1Q8N3D4 1523 aa33.73■■■□□ 2.99
LIME1-204ENST00000476183 ABCC1P33527 1531 aa33.72■■■□□ 2.99
LIME1-204ENST00000476183 ARHGEF12Q9NZN5 1544 aa33.72■■■□□ 2.99
LIME1-204ENST00000476183 ZNF518AQ6AHZ1 1483 aa33.71■■■□□ 2.99
LIME1-204ENST00000476183 AFAP1Q8N556 730 aa33.71■■■□□ 2.99
LIME1-204ENST00000476183 KDM5CP41229 1560 aa33.68■■■□□ 2.98
LIME1-204ENST00000476183 CCNB3Q8WWL7 1395 aa33.67■■■□□ 2.98
LIME1-204ENST00000476183 SIGLEC1Q9BZZ2 1709 aa33.67■■■□□ 2.98
LIME1-204ENST00000476183 TIAM1Q13009 1591 aa33.66■■■□□ 2.98
LIME1-204ENST00000476183 ARID4BQ4LE39 1312 aaPredicted RBP33.66■■■□□ 2.98
LIME1-204ENST00000476183 ITSN2Q9NZM3 1697 aa33.66■■■□□ 2.98
LIME1-204ENST00000476183 TRAPPC8Q9Y2L5 1435 aa33.66■■■□□ 2.98
LIME1-204ENST00000476183 ADAMTSL3P82987 1691 aa33.65■■■□□ 2.98
LIME1-204ENST00000476183 SAMD9LQ8IVG5 1584 aa33.65■■■□□ 2.98
LIME1-204ENST00000476183 BCORL1Q5H9F3 1711 aa33.65■■■□□ 2.98
LIME1-204ENST00000476183 ZNF777Q9ULD5 760 aaPredicted RBP33.64■■■□□ 2.98
LIME1-204ENST00000476183 CFDP1Q9UEE9 299 aaPredicted RBP33.6■■■□□ 2.97
LIME1-204ENST00000476183 ATP10AO60312 1499 aa33.59■■■□□ 2.97
LIME1-204ENST00000476183 HECW2Q9P2P5 1572 aa33.58■■■□□ 2.97
LIME1-204ENST00000476183 SYCP2Q9BX26 1530 aa33.57■■■□□ 2.96
LIME1-204ENST00000476183 MLH3Q9UHC1 1453 aa33.56■■■□□ 2.96
LIME1-204ENST00000476183 NCOA2Q15596 1464 aa33.55■■■□□ 2.96
LIME1-204ENST00000476183 C9orf84Q5VXU9 1444 aa33.54■■■□□ 2.96
LIME1-204ENST00000476183 SUPT6HQ7KZ85 1726 aaKnown RBP33.54■■■□□ 2.96
LIME1-204ENST00000476183 MADDQ8WXG6 1647 aa33.53■■■□□ 2.96
LIME1-204ENST00000476183 LRRC9Q6ZRR7 1453 aa33.53■■■□□ 2.96
LIME1-204ENST00000476183 DIP2CQ9Y2E4 1556 aa33.52■■■□□ 2.96
LIME1-204ENST00000476183 HNRNPMP52272 730 aaKnown RBP eCLIP33.52■■■□□ 2.96
LIME1-204ENST00000476183 MYT1LQ9UL68 1186 aa33.51■■■□□ 2.95
LIME1-204ENST00000476183 MAP3K1Q13233 1512 aa33.51■■■□□ 2.95
LIME1-204ENST00000476183 KIAA1107Q9UPP5 1409 aa33.51■■■□□ 2.95
LIME1-204ENST00000476183 PTPRMP28827 1452 aa33.5■■■□□ 2.95
LIME1-204ENST00000476183 ABCA6Q8N139 1617 aa33.5■■■□□ 2.95
LIME1-204ENST00000476183 PLEKHH2Q8IVE3 1493 aa33.49■■■□□ 2.95
LIME1-204ENST00000476183 ZNF644Q9H582 1327 aaPredicted RBP33.49■■■□□ 2.95
LIME1-204ENST00000476183 KANK4Q5T7N3 995 aaPredicted RBP33.48■■■□□ 2.95
LIME1-204ENST00000476183 KIDINS220Q9ULH0 1771 aa33.47■■■□□ 2.95
LIME1-204ENST00000476183 MLECQ14165 292 aa33.44■■■□□ 2.94
LIME1-204ENST00000476183 RIMS1Q86UR5 1692 aaKnown RBP33.42■■■□□ 2.94
LIME1-204ENST00000476183 REREQ9P2R6 1566 aa33.42■■■□□ 2.94
LIME1-204ENST00000476183 MBD5Q9P267 1494 aa33.39■■■□□ 2.94
LIME1-204ENST00000476183 SPAG9O60271 1321 aaKnown RBP33.39■■■□□ 2.94
LIME1-204ENST00000476183 INO80Q9ULG1 1556 aaPredicted RBP33.34■■■□□ 2.93
LIME1-204ENST00000476183 ATP7AQ04656 1500 aa33.34■■■□□ 2.93
LIME1-204ENST00000476183 FER1L4A9Z1Z3 1794 aa33.34■■■□□ 2.93
LIME1-204ENST00000476183 CAMSAP2Q08AD1 1489 aa33.33■■■□□ 2.93
LIME1-204ENST00000476183 AGLP35573 1532 aa33.32■■■□□ 2.92
LIME1-204ENST00000476183 APLP2Q06481 763 aa33.29■■■□□ 2.92
LIME1-204ENST00000476183 MYOM3Q5VTT5 1437 aa33.23■■■□□ 2.91
LIME1-204ENST00000476183 PLPPR3Q6T4P5 718 aa33.23■■■□□ 2.91
LIME1-204ENST00000476183 CCDC141Q6ZP82 1450 aa33.23■■■□□ 2.91
LIME1-204ENST00000476183 PLXNC1O60486 1568 aa33.2■■■□□ 2.91
LIME1-204ENST00000476183 RTEL1-TNFRSF6BF6WH68 1400 aa33.19■■■□□ 2.9
LIME1-204ENST00000476183 A2MP01023 1474 aa33.19■■■□□ 2.9
LIME1-204ENST00000476183 ARHGEF5Q12774 1597 aa33.18■■■□□ 2.9
LIME1-204ENST00000476183 MIA2Q96PC5 1412 aa33.18■■■□□ 2.9
LIME1-204ENST00000476183 RSPH4AQ5TD94 716 aa33.16■■■□□ 2.9
LIME1-204ENST00000476183 ADGBQ8N7X0 1667 aa33.15■■■□□ 2.9
LIME1-204ENST00000476183 CEBPAP49715 358 aaPredicted RBP33.13■■■□□ 2.89
LIME1-204ENST00000476183 LMTK3Q96Q04 1460 aa33.11■■■□□ 2.89
LIME1-204ENST00000476183 DHX29Q7Z478 1369 aaKnown RBP33.06■■■□□ 2.88
LIME1-204ENST00000476183 TSPY4P0CV99 314 aa33.05■■■□□ 2.88
LIME1-204ENST00000476183 TSPY10P0CW01 314 aa33.05■■■□□ 2.88
LIME1-204ENST00000476183 ESF1Q9H501 851 aaKnown RBP33.04■■■□□ 2.88
LIME1-204ENST00000476183 C3P01024 1663 aa33.04■■■□□ 2.88
LIME1-204ENST00000476183 PTPN23Q9H3S7 1636 aa33.03■■■□□ 2.88
LIME1-204ENST00000476183 MAST1Q9Y2H9 1570 aa33.01■■■□□ 2.88
LIME1-204ENST00000476183 FGD6Q6ZV73 1430 aa33.01■■■□□ 2.87
LIME1-204ENST00000476183 CNTLNQ9NXG0 1405 aa33.01■■■□□ 2.87
LIME1-204ENST00000476183 GGT6Q6P531 493 aa32.99■■■□□ 2.87
LIME1-204ENST00000476183 TCOF1Q13428 1488 aaKnown RBP32.96■■■□□ 2.87
LIME1-204ENST00000476183 HSPA2P54652 639 aa32.95■■■□□ 2.87
LIME1-204ENST00000476183 MROH2AA6NES4 1674 aa32.94■■■□□ 2.86
LIME1-204ENST00000476183 CLTCQ00610 1675 aaKnown RBP32.94■■■□□ 2.86
LIME1-204ENST00000476183 PREX1Q8TCU6 1659 aa32.94■■■□□ 2.86
LIME1-204ENST00000476183 ABCC5O15440 1437 aa32.93■■■□□ 2.86
LIME1-204ENST00000476183 SETD1BQ9UPS6 1966 aaKnown RBP32.92■■■□□ 2.86
LIME1-204ENST00000476183 KIF3BO15066 747 aa32.92■■■□□ 2.86
LIME1-204ENST00000476183 ZMYM3Q14202 1370 aa32.92■■■□□ 2.86
LIME1-204ENST00000476183 CROCC2H7BZ55 1655 aa32.89■■■□□ 2.86
LIME1-204ENST00000476183 PPP6R1Q9UPN7 881 aa32.89■■■□□ 2.86
LIME1-204ENST00000476183 DNMT1P26358 1616 aaKnown RBP32.88■■■□□ 2.85
LIME1-204ENST00000476183 DAPK1P53355 1430 aa32.87■■■□□ 2.85
LIME1-204ENST00000476183 SHANK2Q9UPX8 1470 aa32.86■■■□□ 2.85
LIME1-204ENST00000476183 UHRF1BP1Q6BDS2 1440 aa32.84■■■□□ 2.85
LIME1-204ENST00000476183 NPATQ14207 1427 aa32.8■■■□□ 2.84
LIME1-204ENST00000476183 DUOX2Q9NRD8 1548 aa32.78■■■□□ 2.84
LIME1-204ENST00000476183 PTPRKQ15262 1439 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms