RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 PTPRMP28827 1452 aa19.07■□□□□ 0.64
CLIP2-204ENST00000474962 ADAMTSL3P82987 1691 aa19.07■□□□□ 0.64
CLIP2-204ENST00000474962 MLECQ14165 292 aa19.06■□□□□ 0.64
CLIP2-204ENST00000474962 POGZQ7Z3K3 1410 aa19.05■□□□□ 0.64
CLIP2-204ENST00000474962 PCF11O94913 1555 aaKnown RBP19.04■□□□□ 0.64
CLIP2-204ENST00000474962 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
CLIP2-204ENST00000474962 ARHGEF40Q8TER5 1519 aa19.03■□□□□ 0.64
CLIP2-204ENST00000474962 MAGI2Q86UL8 1455 aa19.03■□□□□ 0.64
CLIP2-204ENST00000474962 BCORL1Q5H9F3 1711 aa19.03■□□□□ 0.64
CLIP2-204ENST00000474962 ARHGAP5Q13017 1502 aa19.02■□□□□ 0.64
CLIP2-204ENST00000474962 ZMYM4Q5VZL5 1548 aa19.02■□□□□ 0.64
CLIP2-204ENST00000474962 ZFYVE16Q7Z3T8 1539 aa19.02■□□□□ 0.64
CLIP2-204ENST00000474962 MYT1LQ9UL68 1186 aa19.02■□□□□ 0.64
CLIP2-204ENST00000474962 MYO5CQ9NQX4 1742 aa19.02■□□□□ 0.63
CLIP2-204ENST00000474962 CCDC18Q5T9S5 1454 aa19.01■□□□□ 0.63
CLIP2-204ENST00000474962 MADDQ8WXG6 1647 aa18.99■□□□□ 0.63
CLIP2-204ENST00000474962 ATP10AO60312 1499 aa18.98■□□□□ 0.63
CLIP2-204ENST00000474962 FYCO1Q9BQS8 1478 aa18.98■□□□□ 0.63
CLIP2-204ENST00000474962 LOC105371045A0A1W2PR82 267 aa18.98■□□□□ 0.63
CLIP2-204ENST00000474962 ZNF777Q9ULD5 760 aaPredicted RBP18.98■□□□□ 0.63
CLIP2-204ENST00000474962 SIGLEC1Q9BZZ2 1709 aa18.97■□□□□ 0.63
CLIP2-204ENST00000474962 CDC42BPBQ9Y5S2 1711 aa18.95■□□□□ 0.62
CLIP2-204ENST00000474962 ZNF518AQ6AHZ1 1483 aa18.95■□□□□ 0.62
CLIP2-204ENST00000474962 ARHGEF12Q9NZN5 1544 aa18.95■□□□□ 0.62
CLIP2-204ENST00000474962 TRAPPC8Q9Y2L5 1435 aa18.94■□□□□ 0.62
CLIP2-204ENST00000474962 HNRNPMP52272 730 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLIP2-204ENST00000474962 RIMS1Q86UR5 1692 aaKnown RBP18.92■□□□□ 0.62
CLIP2-204ENST00000474962 C9orf84Q5VXU9 1444 aa18.91■□□□□ 0.62
CLIP2-204ENST00000474962 CEBPAP49715 358 aaPredicted RBP18.91■□□□□ 0.62
CLIP2-204ENST00000474962 GPATCH8Q9UKJ3 1502 aaKnown RBP18.9■□□□□ 0.62
CLIP2-204ENST00000474962 CFDP1Q9UEE9 299 aaPredicted RBP18.9■□□□□ 0.62
CLIP2-204ENST00000474962 HSPA2P54652 639 aa18.89■□□□□ 0.61
CLIP2-204ENST00000474962 CEP162Q5TB80 1403 aa18.89■□□□□ 0.61
CLIP2-204ENST00000474962 KDM5CP41229 1560 aa18.88■□□□□ 0.61
CLIP2-204ENST00000474962 PREX2Q70Z35 1606 aa18.88■□□□□ 0.61
CLIP2-204ENST00000474962 MTUS2Q5JR59 1369 aa18.87■□□□□ 0.61
CLIP2-204ENST00000474962 MLH3Q9UHC1 1453 aa18.87■□□□□ 0.61
CLIP2-204ENST00000474962 CDC42BPAQ5VT25 1732 aa18.86■□□□□ 0.61
CLIP2-204ENST00000474962 CCNB3Q8WWL7 1395 aa18.86■□□□□ 0.61
CLIP2-204ENST00000474962 ABCC1P33527 1531 aa18.85■□□□□ 0.61
CLIP2-204ENST00000474962 LMTK3Q96Q04 1460 aa18.85■□□□□ 0.61
CLIP2-204ENST00000474962 ZNF644Q9H582 1327 aaPredicted RBP18.84■□□□□ 0.61
CLIP2-204ENST00000474962 SPAG9O60271 1321 aaKnown RBP18.82■□□□□ 0.6
CLIP2-204ENST00000474962 DIP2CQ9Y2E4 1556 aa18.82■□□□□ 0.6
CLIP2-204ENST00000474962 FER1L4A9Z1Z3 1794 aa18.8■□□□□ 0.6
CLIP2-204ENST00000474962 SAMD9LQ8IVG5 1584 aa18.8■□□□□ 0.6
CLIP2-204ENST00000474962 ITSN2Q9NZM3 1697 aa18.79■□□□□ 0.6
CLIP2-204ENST00000474962 ABCA6Q8N139 1617 aa18.79■□□□□ 0.6
CLIP2-204ENST00000474962 KIAA1107Q9UPP5 1409 aa18.78■□□□□ 0.6
CLIP2-204ENST00000474962 ESF1Q9H501 851 aaKnown RBP18.78■□□□□ 0.6
CLIP2-204ENST00000474962 SYCP2Q9BX26 1530 aa18.78■□□□□ 0.6
CLIP2-204ENST00000474962 KIDINS220Q9ULH0 1771 aa18.77■□□□□ 0.6
CLIP2-204ENST00000474962 REREQ9P2R6 1566 aa18.74■□□□□ 0.59
CLIP2-204ENST00000474962 AGLP35573 1532 aa18.74■□□□□ 0.59
CLIP2-204ENST00000474962 PLEKHH2Q8IVE3 1493 aa18.73■□□□□ 0.59
CLIP2-204ENST00000474962 EHBP1L1Q8N3D4 1523 aa18.7■□□□□ 0.58
CLIP2-204ENST00000474962 TIAM1Q13009 1591 aa18.7■□□□□ 0.58
CLIP2-204ENST00000474962 KANK4Q5T7N3 995 aaPredicted RBP18.7■□□□□ 0.58
CLIP2-204ENST00000474962 MBD5Q9P267 1494 aa18.7■□□□□ 0.58
CLIP2-204ENST00000474962 GGT6Q6P531 493 aa18.69■□□□□ 0.58
CLIP2-204ENST00000474962 NCOA2Q15596 1464 aa18.68■□□□□ 0.58
CLIP2-204ENST00000474962 VPS8Q8N3P4 1428 aa18.67■□□□□ 0.58
CLIP2-204ENST00000474962 FBXO41Q8TF61 875 aa18.67■□□□□ 0.58
CLIP2-204ENST00000474962 ATP7AQ04656 1500 aa18.67■□□□□ 0.58
CLIP2-204ENST00000474962 SETD1BQ9UPS6 1966 aaKnown RBP18.66■□□□□ 0.58
CLIP2-204ENST00000474962 A2MP01023 1474 aa18.66■□□□□ 0.58
CLIP2-204ENST00000474962 ZMYM3Q14202 1370 aa18.66■□□□□ 0.58
CLIP2-204ENST00000474962 SUPT6HQ7KZ85 1726 aaKnown RBP18.64■□□□□ 0.57
CLIP2-204ENST00000474962 UHRF1BP1Q6BDS2 1440 aa18.63■□□□□ 0.57
CLIP2-204ENST00000474962 CNTLNQ9NXG0 1405 aa18.63■□□□□ 0.57
CLIP2-204ENST00000474962 C3P01024 1663 aa18.63■□□□□ 0.57
CLIP2-204ENST00000474962 RSPH4AQ5TD94 716 aa18.62■□□□□ 0.57
CLIP2-204ENST00000474962 LRRC9Q6ZRR7 1453 aa18.62■□□□□ 0.57
CLIP2-204ENST00000474962 INO80Q9ULG1 1556 aaPredicted RBP18.62■□□□□ 0.57
CLIP2-204ENST00000474962 PREX1Q8TCU6 1659 aa18.62■□□□□ 0.57
CLIP2-204ENST00000474962 RTEL1-TNFRSF6BF6WH68 1400 aa18.6■□□□□ 0.57
CLIP2-204ENST00000474962 DHX29Q7Z478 1369 aaKnown RBP18.6■□□□□ 0.57
CLIP2-204ENST00000474962 KIF3BO15066 747 aa18.59■□□□□ 0.57
CLIP2-204ENST00000474962 TSPY4P0CV99 314 aa18.59■□□□□ 0.57
CLIP2-204ENST00000474962 TSPY10P0CW01 314 aa18.59■□□□□ 0.57
CLIP2-204ENST00000474962 DMRT2Q9Y5R5 561 aa18.59■□□□□ 0.57
CLIP2-204ENST00000474962 CAMSAP2Q08AD1 1489 aa18.58■□□□□ 0.57
CLIP2-204ENST00000474962 CERKQ8TCT0 537 aa18.58■□□□□ 0.56
CLIP2-204ENST00000474962 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
CLIP2-204ENST00000474962 PLXNC1O60486 1568 aa18.58■□□□□ 0.56
CLIP2-204ENST00000474962 CCDC141Q6ZP82 1450 aa18.55■□□□□ 0.56
CLIP2-204ENST00000474962 STRCQ7RTU9 1775 aa18.55■□□□□ 0.56
CLIP2-204ENST00000474962 APLP2Q06481 763 aa18.53■□□□□ 0.56
CLIP2-204ENST00000474962 NPATQ14207 1427 aa18.53■□□□□ 0.56
CLIP2-204ENST00000474962 MAP3K1Q13233 1512 aa18.53■□□□□ 0.56
CLIP2-204ENST00000474962 PTPRKQ15262 1439 aa18.52■□□□□ 0.56
CLIP2-204ENST00000474962 FBXO31Q5XUX0 539 aaPredicted RBP18.52■□□□□ 0.56
CLIP2-204ENST00000474962 CLTCQ00610 1675 aaKnown RBP18.52■□□□□ 0.56
CLIP2-204ENST00000474962 ADGBQ8N7X0 1667 aa18.52■□□□□ 0.56
CLIP2-204ENST00000474962 NCKAP5LQ9HCH0 1330 aa18.5■□□□□ 0.55
CLIP2-204ENST00000474962 WASHC2CQ9Y4E1 1318 aa18.5■□□□□ 0.55
CLIP2-204ENST00000474962 MROH2AA6NES4 1674 aa18.49■□□□□ 0.55
CLIP2-204ENST00000474962 MYOM3Q5VTT5 1437 aa18.48■□□□□ 0.55
CLIP2-204ENST00000474962 PTPRTO14522 1441 aa18.47■□□□□ 0.55
CLIP2-204ENST00000474962 ARHGEF5Q12774 1597 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms