RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 CDC42BPBQ9Y5S2 1711 aa26.7■■□□□ 1.86
SCAF11-206ENST00000474828 KANK4Q5T7N3 995 aaPredicted RBP26.68■■□□□ 1.86
SCAF11-206ENST00000474828 EFCAB2Q5VUJ9 269 aa26.68■■□□□ 1.86
SCAF11-206ENST00000474828 NCOA2Q15596 1464 aa26.67■■□□□ 1.86
SCAF11-206ENST00000474828 SUPT6HQ7KZ85 1726 aaKnown RBP26.66■■□□□ 1.86
SCAF11-206ENST00000474828 ARHGAP5Q13017 1502 aa26.64■■□□□ 1.85
SCAF11-206ENST00000474828 CCNB3Q8WWL7 1395 aa26.62■■□□□ 1.85
SCAF11-206ENST00000474828 FRMPD1Q5SYB0 1578 aa26.61■■□□□ 1.85
SCAF11-206ENST00000474828 DENND4BO75064 1496 aaPredicted RBP26.6■■□□□ 1.85
SCAF11-206ENST00000474828 ADGRL1O94910 1474 aa26.6■■□□□ 1.85
SCAF11-206ENST00000474828 APLP2Q06481 763 aa26.59■■□□□ 1.85
SCAF11-206ENST00000474828 RICTORQ6R327 1708 aa26.58■■□□□ 1.85
SCAF11-206ENST00000474828 ITSN2Q9NZM3 1697 aa26.57■■□□□ 1.84
SCAF11-206ENST00000474828 ABCC1P33527 1531 aa26.57■■□□□ 1.84
SCAF11-206ENST00000474828 SCAPERQ9BY12 1400 aa26.56■■□□□ 1.84
SCAF11-206ENST00000474828 POGZQ7Z3K3 1410 aa26.56■■□□□ 1.84
SCAF11-206ENST00000474828 ZMYM4Q5VZL5 1548 aa26.55■■□□□ 1.84
SCAF11-206ENST00000474828 KIAA1107Q9UPP5 1409 aa26.55■■□□□ 1.84
SCAF11-206ENST00000474828 SAMD9LQ8IVG5 1584 aa26.54■■□□□ 1.84
SCAF11-206ENST00000474828 ARHGEF12Q9NZN5 1544 aa26.54■■□□□ 1.84
SCAF11-206ENST00000474828 RAPGEF3O95398 923 aa26.53■■□□□ 1.84
SCAF11-206ENST00000474828 CFDP1Q9UEE9 299 aaPredicted RBP26.53■■□□□ 1.84
SCAF11-206ENST00000474828 PLEKHH2Q8IVE3 1493 aa26.51■■□□□ 1.83
SCAF11-206ENST00000474828 KDM5CP41229 1560 aa26.5■■□□□ 1.83
SCAF11-206ENST00000474828 ZNF518AQ6AHZ1 1483 aa26.49■■□□□ 1.83
SCAF11-206ENST00000474828 MIA2Q96PC5 1412 aa26.49■■□□□ 1.83
SCAF11-206ENST00000474828 MAGI2Q86UL8 1455 aa26.49■■□□□ 1.83
SCAF11-206ENST00000474828 MYOM3Q5VTT5 1437 aa26.48■■□□□ 1.83
SCAF11-206ENST00000474828 MBD5Q9P267 1494 aa26.45■■□□□ 1.82
SCAF11-206ENST00000474828 TRAPPC8Q9Y2L5 1435 aa26.44■■□□□ 1.82
SCAF11-206ENST00000474828 SYCP2Q9BX26 1530 aa26.42■■□□□ 1.82
SCAF11-206ENST00000474828 MLH3Q9UHC1 1453 aa26.42■■□□□ 1.82
SCAF11-206ENST00000474828 ZNF644Q9H582 1327 aaPredicted RBP26.41■■□□□ 1.82
SCAF11-206ENST00000474828 AFAP1Q8N556 730 aa26.4■■□□□ 1.82
SCAF11-206ENST00000474828 ARHGEF40Q8TER5 1519 aa26.39■■□□□ 1.82
SCAF11-206ENST00000474828 CAMSAP2Q08AD1 1489 aa26.39■■□□□ 1.82
SCAF11-206ENST00000474828 KDM4FA0A1W2PPD8 638 aa26.39■■□□□ 1.82
SCAF11-206ENST00000474828 ZNF777Q9ULD5 760 aaPredicted RBP26.38■■□□□ 1.81
SCAF11-206ENST00000474828 ZFYVE16Q7Z3T8 1539 aa26.35■■□□□ 1.81
SCAF11-206ENST00000474828 HNRNPMP52272 730 aaKnown RBP eCLIP26.35■■□□□ 1.81
SCAF11-206ENST00000474828 ARHGEF5Q12774 1597 aa26.35■■□□□ 1.81
SCAF11-206ENST00000474828 FGD6Q6ZV73 1430 aa26.35■■□□□ 1.81
SCAF11-206ENST00000474828 TCOF1Q13428 1488 aaKnown RBP26.35■■□□□ 1.81
SCAF11-206ENST00000474828 HECW2Q9P2P5 1572 aa26.34■■□□□ 1.81
SCAF11-206ENST00000474828 YEATS2Q9ULM3 1422 aa26.34■■□□□ 1.81
SCAF11-206ENST00000474828 RSPH4AQ5TD94 716 aa26.34■■□□□ 1.81
SCAF11-206ENST00000474828 KIDINS220Q9ULH0 1771 aa26.3■■□□□ 1.8
SCAF11-206ENST00000474828 CCDC141Q6ZP82 1450 aa26.3■■□□□ 1.8
SCAF11-206ENST00000474828 REREQ9P2R6 1566 aa26.29■■□□□ 1.8
SCAF11-206ENST00000474828 INO80Q9ULG1 1556 aaPredicted RBP26.29■■□□□ 1.8
SCAF11-206ENST00000474828 RTEL1-TNFRSF6BF6WH68 1400 aa26.29■■□□□ 1.8
SCAF11-206ENST00000474828 PTPN23Q9H3S7 1636 aa26.28■■□□□ 1.8
SCAF11-206ENST00000474828 ATP10AO60312 1499 aa26.28■■□□□ 1.8
SCAF11-206ENST00000474828 DIP2CQ9Y2E4 1556 aa26.27■■□□□ 1.8
SCAF11-206ENST00000474828 ABCA6Q8N139 1617 aa26.25■■□□□ 1.79
SCAF11-206ENST00000474828 SPAG9O60271 1321 aaKnown RBP26.24■■□□□ 1.79
SCAF11-206ENST00000474828 ATP7AQ04656 1500 aa26.24■■□□□ 1.79
SCAF11-206ENST00000474828 C9orf84Q5VXU9 1444 aa26.22■■□□□ 1.79
SCAF11-206ENST00000474828 MAST1Q9Y2H9 1570 aa26.22■■□□□ 1.79
SCAF11-206ENST00000474828 SIGLEC1Q9BZZ2 1709 aa26.2■■□□□ 1.79
SCAF11-206ENST00000474828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.2■■□□□ 1.78
SCAF11-206ENST00000474828 ABCC5O15440 1437 aa26.18■■□□□ 1.78
SCAF11-206ENST00000474828 AGLP35573 1532 aa26.18■■□□□ 1.78
SCAF11-206ENST00000474828 SHANK2Q9UPX8 1470 aa26.17■■□□□ 1.78
SCAF11-206ENST00000474828 DNMT1P26358 1616 aaKnown RBP26.17■■□□□ 1.78
SCAF11-206ENST00000474828 PLXNC1O60486 1568 aa26.15■■□□□ 1.78
SCAF11-206ENST00000474828 DAPK1P53355 1430 aa26.14■■□□□ 1.77
SCAF11-206ENST00000474828 RRBP1Q9P2E9 1410 aaKnown RBP26.14■■□□□ 1.77
SCAF11-206ENST00000474828 CROCC2H7BZ55 1655 aa26.12■■□□□ 1.77
SCAF11-206ENST00000474828 TSPY4P0CV99 314 aa26.12■■□□□ 1.77
SCAF11-206ENST00000474828 TSPY10P0CW01 314 aa26.12■■□□□ 1.77
SCAF11-206ENST00000474828 PPARGC1BQ86YN6 1023 aaKnown RBP26.12■■□□□ 1.77
SCAF11-206ENST00000474828 BCORL1Q5H9F3 1711 aa26.11■■□□□ 1.77
SCAF11-206ENST00000474828 ADAMTSL3P82987 1691 aa26.1■■□□□ 1.77
SCAF11-206ENST00000474828 ADGBQ8N7X0 1667 aa26.1■■□□□ 1.77
SCAF11-206ENST00000474828 A2MP01023 1474 aa26.1■■□□□ 1.77
SCAF11-206ENST00000474828 DHX29Q7Z478 1369 aaKnown RBP26.07■■□□□ 1.76
SCAF11-206ENST00000474828 MYT1LQ9UL68 1186 aa26.05■■□□□ 1.76
SCAF11-206ENST00000474828 ADGRL2O95490 1459 aa26.04■■□□□ 1.76
SCAF11-206ENST00000474828 FAM50AQ14320 339 aaKnown RBP26.01■■□□□ 1.75
SCAF11-206ENST00000474828 PTPRKQ15262 1439 aa26■■□□□ 1.75
SCAF11-206ENST00000474828 NCOA1Q15788 1441 aa26■■□□□ 1.75
SCAF11-206ENST00000474828 ARID4BQ4LE39 1312 aaPredicted RBP26■■□□□ 1.75
SCAF11-206ENST00000474828 DUOX2Q9NRD8 1548 aa25.97■■□□□ 1.75
SCAF11-206ENST00000474828 MADDQ8WXG6 1647 aa25.96■■□□□ 1.75
SCAF11-206ENST00000474828 ROCK1Q13464 1354 aa25.95■■□□□ 1.75
SCAF11-206ENST00000474828 ANKRD30AQ9BXX3 1397 aa25.95■■□□□ 1.74
SCAF11-206ENST00000474828 EIF2AK4Q9P2K8 1649 aaKnown RBP25.94■■□□□ 1.74
SCAF11-206ENST00000474828 KIF15Q9NS87 1388 aa25.94■■□□□ 1.74
SCAF11-206ENST00000474828 PPP6R1Q9UPN7 881 aa25.93■■□□□ 1.74
SCAF11-206ENST00000474828 ERBINQ96RT1 1412 aa25.91■■□□□ 1.74
SCAF11-206ENST00000474828 PTPRMP28827 1452 aa25.9■■□□□ 1.74
SCAF11-206ENST00000474828 FAM135AQ9P2D6 1515 aa25.89■■□□□ 1.74
SCAF11-206ENST00000474828 RNF17Q9BXT8 1623 aaKnown RBP25.88■■□□□ 1.73
SCAF11-206ENST00000474828 FER1L4A9Z1Z3 1794 aa25.87■■□□□ 1.73
SCAF11-206ENST00000474828 RRP7BPQ9NSQ0 103 aa25.86■■□□□ 1.73
SCAF11-206ENST00000474828 CHIC2Q9UKJ5 165 aa25.86■■□□□ 1.73
SCAF11-206ENST00000474828 CNTLNQ9NXG0 1405 aa25.86■■□□□ 1.73
SCAF11-206ENST00000474828 MLECQ14165 292 aa25.85■■□□□ 1.73
SCAF11-206ENST00000474828 KIF3BO15066 747 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms