RNA–Protein interactions for RNA: ENST00000474240.1

ECHDC1-213, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 482 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-213ENST00000474240 KHSRPQ92945 711 aaKnown RBP eCLIP9.8□□□□□ -0.84
ECHDC1-213ENST00000474240 PHF8Q9UPP1 1060 aa9.79□□□□□ -0.84
ECHDC1-213ENST00000474240 ZNF316A6NFI3 1004 aaPredicted RBP9.77□□□□□ -0.85
ECHDC1-213ENST00000474240 LSM11P83369 360 aaKnown RBP eCLIP9.77□□□□□ -0.85
ECHDC1-213ENST00000474240 SOX12O15370 315 aa9.76□□□□□ -0.85
ECHDC1-213ENST00000474240 TRIM41Q8WV44 630 aa9.76□□□□□ -0.85
ECHDC1-213ENST00000474240 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.74□□□□□ -0.85
ECHDC1-213ENST00000474240 ZFP91Q96JP5 570 aaPredicted RBP9.74□□□□□ -0.85
ECHDC1-213ENST00000474240 RNF25Q96BH1 459 aaPredicted RBP9.73□□□□□ -0.85
ECHDC1-213ENST00000474240 RIOK3O14730 519 aaKnown RBP9.72□□□□□ -0.85
ECHDC1-213ENST00000474240 PLA2G2EQ9NZK7 142 aa9.68□□□□□ -0.86
ECHDC1-213ENST00000474240 AXIN2Q9Y2T1 843 aa9.68□□□□□ -0.86
ECHDC1-213ENST00000474240 VGFO15240 615 aaPredicted RBP9.67□□□□□ -0.86
ECHDC1-213ENST00000474240 NUDT7P0C024 238 aa9.67□□□□□ -0.86
ECHDC1-213ENST00000474240 POTEEQ6S8J3 1075 aa9.66□□□□□ -0.86
ECHDC1-213ENST00000474240 PBX2P40425 430 aa9.64□□□□□ -0.87
ECHDC1-213ENST00000474240 NLRP6P59044 892 aa9.63□□□□□ -0.87
ECHDC1-213ENST00000474240 C2orf72A6NCS6 295 aa9.62□□□□□ -0.87
ECHDC1-213ENST00000474240 FBXO22Q8NEZ5 403 aa9.62□□□□□ -0.87
ECHDC1-213ENST00000474240 LHX6Q9UPM6 363 aa9.62□□□□□ -0.87
ECHDC1-213ENST00000474240 HCSTQ9UBK5 93 aa9.6□□□□□ -0.87
ECHDC1-213ENST00000474240 KIF3CO14782 793 aa9.59□□□□□ -0.87
ECHDC1-213ENST00000474240 PCDHGA4Q9Y5G9 962 aa9.59□□□□□ -0.87
ECHDC1-213ENST00000474240 BCL11BQ9C0K0 894 aaPredicted RBP9.58□□□□□ -0.88
ECHDC1-213ENST00000474240 ADGRD1Q6QNK2 874 aa9.56□□□□□ -0.88
ECHDC1-213ENST00000474240 MFRPQ9BY79 579 aa9.56□□□□□ -0.88
ECHDC1-213ENST00000474240 STK24Q9Y6E0 443 aa9.55□□□□□ -0.88
ECHDC1-213ENST00000474240 SLC34A2O95436 690 aa9.52□□□□□ -0.89
ECHDC1-213ENST00000474240 ARHGAP33O14559 1287 aa9.5□□□□□ -0.89
ECHDC1-213ENST00000474240 TMC2Q8TDI7 906 aa9.49□□□□□ -0.89
ECHDC1-213ENST00000474240 DMRTA1Q5VZB9 504 aa9.48□□□□□ -0.89
ECHDC1-213ENST00000474240 STK25O00506 426 aa9.47□□□□□ -0.89
ECHDC1-213ENST00000474240 PSEN2P49810 448 aa9.47□□□□□ -0.89
ECHDC1-213ENST00000474240 KCTD12Q96CX2 325 aaKnown RBP9.47□□□□□ -0.89
ECHDC1-213ENST00000474240 HRO43593 1189 aa9.46□□□□□ -0.9
ECHDC1-213ENST00000474240 TAOK2Q9UL54 1235 aa9.45□□□□□ -0.9
ECHDC1-213ENST00000474240 PSDA5PKW4 1024 aaPredicted RBP9.44□□□□□ -0.9
ECHDC1-213ENST00000474240 TK2O00142 265 aa9.44□□□□□ -0.9
ECHDC1-213ENST00000474240 KDM4FA0A1W2PPD8 638 aa9.41□□□□□ -0.9
ECHDC1-213ENST00000474240 PPP4R3BQ5MIZ7 849 aa9.38□□□□□ -0.91
ECHDC1-213ENST00000474240 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
ECHDC1-213ENST00000474240 PPP1R37O75864 691 aa9.37□□□□□ -0.91
ECHDC1-213ENST00000474240 KCNK17Q96T54 332 aa9.37□□□□□ -0.91
ECHDC1-213ENST00000474240 PTPN5P54829 565 aa9.36□□□□□ -0.91
ECHDC1-213ENST00000474240 PTCD2Q8WV60 388 aaKnown RBP9.36□□□□□ -0.91
ECHDC1-213ENST00000474240 ECM2O94769 699 aaPredicted RBP9.32□□□□□ -0.92
ECHDC1-213ENST00000474240 PLPP6Q8IY26 295 aa9.32□□□□□ -0.92
ECHDC1-213ENST00000474240 KCNH8Q96L42 1107 aa9.32□□□□□ -0.92
ECHDC1-213ENST00000474240 IRX2Q9BZI1 471 aaPredicted RBP9.32□□□□□ -0.92
ECHDC1-213ENST00000474240 VPS9D1Q9Y2B5 631 aa9.3□□□□□ -0.92
ECHDC1-213ENST00000474240 FOXK1P85037 733 aa9.29□□□□□ -0.92
ECHDC1-213ENST00000474240 RGL2O15211 777 aa9.28□□□□□ -0.92
ECHDC1-213ENST00000474240 A0A0G2JS52 829 aa9.27□□□□□ -0.93
ECHDC1-213ENST00000474240 DSG2Q14126 1118 aa9.27□□□□□ -0.93
ECHDC1-213ENST00000474240 RGS20O76081 388 aa9.26□□□□□ -0.93
ECHDC1-213ENST00000474240 THSD4Q6ZMP0 1018 aa9.26□□□□□ -0.93
ECHDC1-213ENST00000474240 TBC1D12O60347 775 aa9.25□□□□□ -0.93
ECHDC1-213ENST00000474240 IFFO2Q5TF58 517 aa9.25□□□□□ -0.93
ECHDC1-213ENST00000474240 GPHNQ9NQX3 736 aaPredicted RBP9.24□□□□□ -0.93
ECHDC1-213ENST00000474240 ZNF454Q8N9F8 522 aa9.23□□□□□ -0.93
ECHDC1-213ENST00000474240 UPF1Q92900 1129 aaKnown RBP eCLIP9.23□□□□□ -0.93
ECHDC1-213ENST00000474240 GOLGA8CPA6NN73 597 aa9.2□□□□□ -0.94
ECHDC1-213ENST00000474240 WNT2BQ93097 391 aa9.2□□□□□ -0.94
ECHDC1-213ENST00000474240 BCL2L12Q9HB09 334 aa9.2□□□□□ -0.94
ECHDC1-213ENST00000474240 BHMG1C9JSJ3 638 aaPredicted RBP9.18□□□□□ -0.94
ECHDC1-213ENST00000474240 SLC4A5Q9BY07 1137 aa9.18□□□□□ -0.94
ECHDC1-213ENST00000474240 PKD2Q13563 968 aa9.17□□□□□ -0.94
ECHDC1-213ENST00000474240 AMER1Q5JTC6 1135 aaPredicted RBP9.17□□□□□ -0.94
ECHDC1-213ENST00000474240 MRPL50Q8N5N7 158 aaKnown RBP9.17□□□□□ -0.94
ECHDC1-213ENST00000474240 OXER1Q8TDS5 423 aa9.17□□□□□ -0.94
ECHDC1-213ENST00000474240 ZBED2Q9BTP6 218 aa9.17□□□□□ -0.94
ECHDC1-213ENST00000474240 PTPREP23469 700 aa9.16□□□□□ -0.94
ECHDC1-213ENST00000474240 FOSBP53539 338 aa9.14□□□□□ -0.95
ECHDC1-213ENST00000474240 Q6ZNB5 142 aa9.12□□□□□ -0.95
ECHDC1-213ENST00000474240 NBPF3Q9H094 633 aa9.12□□□□□ -0.95
ECHDC1-213ENST00000474240 ADAM33Q9BZ11 813 aa9.09□□□□□ -0.95
ECHDC1-213ENST00000474240 PPP1R15BQ5SWA1 713 aa9.08□□□□□ -0.96
ECHDC1-213ENST00000474240 JPH4Q96JJ6 628 aa9.08□□□□□ -0.96
ECHDC1-213ENST00000474240 ITGBL1O95965 494 aaPredicted RBP9.06□□□□□ -0.96
ECHDC1-213ENST00000474240 HS6ST3Q8IZP7 471 aa9.06□□□□□ -0.96
ECHDC1-213ENST00000474240 ZDHHC16Q969W1 377 aa9.06□□□□□ -0.96
ECHDC1-213ENST00000474240 BCAMP50895 628 aa9.05□□□□□ -0.96
ECHDC1-213ENST00000474240 ANKK1Q8NFD2 765 aa9.05□□□□□ -0.96
ECHDC1-213ENST00000474240 CRISPLD2Q9H0B8 497 aa9.05□□□□□ -0.96
ECHDC1-213ENST00000474240 EVI5O60447 810 aa9.03□□□□□ -0.96
ECHDC1-213ENST00000474240 PROX2Q3B8N5 592 aa9.03□□□□□ -0.96
ECHDC1-213ENST00000474240 PPP1R3GB7ZBB8 358 aa9.01□□□□□ -0.97
ECHDC1-213ENST00000474240 ANO8Q9HCE9 1232 aaPredicted RBP9.01□□□□□ -0.97
ECHDC1-213ENST00000474240 RABGEF1Q9UJ41 708 aa9□□□□□ -0.97
ECHDC1-213ENST00000474240 COL9A1P20849 921 aa8.98□□□□□ -0.97
ECHDC1-213ENST00000474240 NCKAP5LQ9HCH0 1330 aa8.98□□□□□ -0.97
ECHDC1-213ENST00000474240 LCE2BO14633 110 aa8.97□□□□□ -0.97
ECHDC1-213ENST00000474240 CHGAP10645 457 aaKnown RBP8.97□□□□□ -0.97
ECHDC1-213ENST00000474240 NKX1-1Q15270 411 aaPredicted RBP8.97□□□□□ -0.97
ECHDC1-213ENST00000474240 RTN4Q9NQC3 1192 aaKnown RBP8.97□□□□□ -0.97
ECHDC1-213ENST00000474240 SOWAHBA6NEL2 793 aa8.96□□□□□ -0.98
ECHDC1-213ENST00000474240 KCNC4Q03721 635 aa8.96□□□□□ -0.98
ECHDC1-213ENST00000474240 WBP1LQ9NX94 342 aa8.96□□□□□ -0.98
ECHDC1-213ENST00000474240 ZFRQ96KR1 1074 aaKnown RBP8.94□□□□□ -0.98
ECHDC1-213ENST00000474240 PCDHGA10Q9Y5H3 936 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms