RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF710Q8N1W2 664 aa12.49□□□□□ -0.41
CCDC88A-212ENST00000474059 GPR153Q6NV75 609 aa12.48□□□□□ -0.41
CCDC88A-212ENST00000474059 RGL2O15211 777 aa12.47□□□□□ -0.41
CCDC88A-212ENST00000474059 NLRP6P59044 892 aa12.47□□□□□ -0.41
CCDC88A-212ENST00000474059 STK24Q9Y6E0 443 aa12.47□□□□□ -0.41
CCDC88A-212ENST00000474059 ECM2O94769 699 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-212ENST00000474059 ZSWIM6Q9HCJ5 1215 aa12.43□□□□□ -0.42
CCDC88A-212ENST00000474059 ERBB3P21860 1342 aa12.42□□□□□ -0.42
CCDC88A-212ENST00000474059 STK25O00506 426 aa12.42□□□□□ -0.42
CCDC88A-212ENST00000474059 KIF3CO14782 793 aa12.42□□□□□ -0.42
CCDC88A-212ENST00000474059 VARS2Q5ST30 1063 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-212ENST00000474059 RIMBP2O15034 1052 aa12.39□□□□□ -0.43
CCDC88A-212ENST00000474059 KHSRPQ92945 711 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC88A-212ENST00000474059 TAOK2Q9UL54 1235 aa12.37□□□□□ -0.43
CCDC88A-212ENST00000474059 ARSIQ5FYB1 569 aa12.36□□□□□ -0.43
CCDC88A-212ENST00000474059 C2orf72A6NCS6 295 aa12.34□□□□□ -0.43
CCDC88A-212ENST00000474059 ZNF687Q8N1G0 1237 aa12.33□□□□□ -0.44
CCDC88A-212ENST00000474059 PPP1R37O75864 691 aa12.32□□□□□ -0.44
CCDC88A-212ENST00000474059 ZNF316A6NFI3 1004 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-212ENST00000474059 POTEEQ6S8J3 1075 aa12.22□□□□□ -0.45
CCDC88A-212ENST00000474059 SLC34A2O95436 690 aa12.21□□□□□ -0.45
CCDC88A-212ENST00000474059 NUDT7P0C024 238 aa12.2□□□□□ -0.46
CCDC88A-212ENST00000474059 PCDHGA4Q9Y5G9 962 aa12.19□□□□□ -0.46
CCDC88A-212ENST00000474059 HS6ST3Q8IZP7 471 aa12.18□□□□□ -0.46
CCDC88A-212ENST00000474059 RNF166Q96A37 237 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-212ENST00000474059 KDM4FA0A1W2PPD8 638 aa12.17□□□□□ -0.46
CCDC88A-212ENST00000474059 LHX6Q9UPM6 363 aa12.16□□□□□ -0.46
CCDC88A-212ENST00000474059 MYT1LQ9UL68 1186 aa12.15□□□□□ -0.46
CCDC88A-212ENST00000474059 TMC2Q8TDI7 906 aa12.14□□□□□ -0.47
CCDC88A-212ENST00000474059 NKX1-1Q15270 411 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-212ENST00000474059 LSM11P83369 360 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC88A-212ENST00000474059 ANKRD13DQ6ZTN6 518 aa12.09□□□□□ -0.47
CCDC88A-212ENST00000474059 AXIN2Q9Y2T1 843 aa12.08□□□□□ -0.48
CCDC88A-212ENST00000474059 FOXK1P85037 733 aa12.07□□□□□ -0.48
CCDC88A-212ENST00000474059 PTCD2Q8WV60 388 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-212ENST00000474059 DNAJC5Q9H3Z4 198 aa12.07□□□□□ -0.48
CCDC88A-212ENST00000474059 DSG2Q14126 1118 aa12.05□□□□□ -0.48
CCDC88A-212ENST00000474059 GPHNQ9NQX3 736 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-212ENST00000474059 PBX2P40425 430 aa12.04□□□□□ -0.48
CCDC88A-212ENST00000474059 PTGER2P43116 358 aa12.04□□□□□ -0.48
CCDC88A-212ENST00000474059 CHGAP10645 457 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-212ENST00000474059 PLPP6Q8IY26 295 aa12.03□□□□□ -0.48
CCDC88A-212ENST00000474059 DMRTA1Q5VZB9 504 aa11.95□□□□□ -0.5
CCDC88A-212ENST00000474059 CRISPLD2Q9H0B8 497 aa11.95□□□□□ -0.5
CCDC88A-212ENST00000474059 ARHGAP33O14559 1287 aa11.94□□□□□ -0.5
CCDC88A-212ENST00000474059 PSEN2P49810 448 aa11.93□□□□□ -0.5
CCDC88A-212ENST00000474059 ADGRD1Q6QNK2 874 aa11.93□□□□□ -0.5
CCDC88A-212ENST00000474059 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
CCDC88A-212ENST00000474059 NCKAP5LQ9HCH0 1330 aa11.91□□□□□ -0.5
CCDC88A-212ENST00000474059 PSDA5PKW4 1024 aaPredicted RBP11.91□□□□□ -0.5
CCDC88A-212ENST00000474059 HRO43593 1189 aa11.9□□□□□ -0.5
CCDC88A-212ENST00000474059 GTPBP6O43824 516 aaPredicted RBP11.87□□□□□ -0.51
CCDC88A-212ENST00000474059 TK2O00142 265 aa11.85□□□□□ -0.51
CCDC88A-212ENST00000474059 UPF1Q92900 1129 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC88A-212ENST00000474059 PPP4R3BQ5MIZ7 849 aa11.83□□□□□ -0.52
CCDC88A-212ENST00000474059 PPP1R15BQ5SWA1 713 aa11.83□□□□□ -0.52
CCDC88A-212ENST00000474059 TBC1D12O60347 775 aa11.8□□□□□ -0.52
CCDC88A-212ENST00000474059 KCNK17Q96T54 332 aa11.78□□□□□ -0.52
CCDC88A-212ENST00000474059 RYDENQ9NUL5 291 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-212ENST00000474059 FOSBP53539 338 aa11.77□□□□□ -0.53
CCDC88A-212ENST00000474059 ANO8Q9HCE9 1232 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-212ENST00000474059 MFSD10Q14728 455 aa11.75□□□□□ -0.53
CCDC88A-212ENST00000474059 ZNF454Q8N9F8 522 aa11.75□□□□□ -0.53
CCDC88A-212ENST00000474059 BCL2L12Q9HB09 334 aa11.75□□□□□ -0.53
CCDC88A-212ENST00000474059 HCSTQ9UBK5 93 aa11.75□□□□□ -0.53
CCDC88A-212ENST00000474059 VPS9D1Q9Y2B5 631 aa11.75□□□□□ -0.53
CCDC88A-212ENST00000474059 PDE4AP27815 886 aa11.73□□□□□ -0.53
CCDC88A-212ENST00000474059 CADPS2Q86UW7 1296 aa11.73□□□□□ -0.53
CCDC88A-212ENST00000474059 PLA2G2EQ9NZK7 142 aa11.72□□□□□ -0.53
CCDC88A-212ENST00000474059 EMILIN3Q9NT22 766 aa11.71□□□□□ -0.53
CCDC88A-212ENST00000474059 KCTD12Q96CX2 325 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-212ENST00000474059 LARP6Q9BRS8 491 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-212ENST00000474059 SLC4A5Q9BY07 1137 aa11.7□□□□□ -0.54
CCDC88A-212ENST00000474059 BHMG1C9JSJ3 638 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-212ENST00000474059 EVI5O60447 810 aa11.69□□□□□ -0.54
CCDC88A-212ENST00000474059 JPH4Q96JJ6 628 aa11.69□□□□□ -0.54
CCDC88A-212ENST00000474059 DDX27Q96GQ7 796 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-212ENST00000474059 ADAM33Q9BZ11 813 aa11.68□□□□□ -0.54
CCDC88A-212ENST00000474059 ZBED2Q9BTP6 218 aa11.67□□□□□ -0.54
CCDC88A-212ENST00000474059 PTPREP23469 700 aa11.62□□□□□ -0.55
CCDC88A-212ENST00000474059 ZDHHC16Q969W1 377 aa11.61□□□□□ -0.55
CCDC88A-212ENST00000474059 PCDHGA10Q9Y5H3 936 aa11.6□□□□□ -0.55
CCDC88A-212ENST00000474059 KCNH8Q96L42 1107 aa11.59□□□□□ -0.55
CCDC88A-212ENST00000474059 THSD4Q6ZMP0 1018 aa11.57□□□□□ -0.56
CCDC88A-212ENST00000474059 COL9A1P20849 921 aa11.56□□□□□ -0.56
CCDC88A-212ENST00000474059 MAP3K9P80192 1104 aa11.56□□□□□ -0.56
CCDC88A-212ENST00000474059 CAMK2BQ13554 666 aa11.56□□□□□ -0.56
CCDC88A-212ENST00000474059 PTPN5P54829 565 aa11.54□□□□□ -0.56
CCDC88A-212ENST00000474059 DCAF8L2P0C7V8 631 aa11.53□□□□□ -0.56
CCDC88A-212ENST00000474059 PROX2Q3B8N5 592 aa11.53□□□□□ -0.56
CCDC88A-212ENST00000474059 PPP1R3GB7ZBB8 358 aa11.52□□□□□ -0.57
CCDC88A-212ENST00000474059 STAC3Q96MF2 364 aa11.52□□□□□ -0.57
CCDC88A-212ENST00000474059 MRPL50Q8N5N7 158 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-212ENST00000474059 WNT2BQ93097 391 aa11.49□□□□□ -0.57
CCDC88A-212ENST00000474059 PHF14O94880 888 aa11.48□□□□□ -0.57
CCDC88A-212ENST00000474059 TYW1BQ6NUM6 668 aa11.48□□□□□ -0.57
CCDC88A-212ENST00000474059 DPYSL4O14531 572 aa11.47□□□□□ -0.57
CCDC88A-212ENST00000474059 IFFO2Q5TF58 517 aa11.46□□□□□ -0.57
CCDC88A-212ENST00000474059 RABGEF1Q9UJ41 708 aa11.46□□□□□ -0.57
CCDC88A-212ENST00000474059 FBXW7Q969H0 707 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms