RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ZNF777Q9ULD5 760 aaPredicted RBP22.42■■□□□ 1.18
VAMP4-203ENST00000474047 APLP2Q06481 763 aa22.41■■□□□ 1.18
VAMP4-203ENST00000474047 CDC42BPBQ9Y5S2 1711 aa22.41■■□□□ 1.18
VAMP4-203ENST00000474047 EHBP1L1Q8N3D4 1523 aa22.41■■□□□ 1.18
VAMP4-203ENST00000474047 PREX2Q70Z35 1606 aa22.4■■□□□ 1.18
VAMP4-203ENST00000474047 FRMPD1Q5SYB0 1578 aa22.4■■□□□ 1.18
VAMP4-203ENST00000474047 RICTORQ6R327 1708 aa22.4■■□□□ 1.18
VAMP4-203ENST00000474047 KDM4FA0A1W2PPD8 638 aa22.4■■□□□ 1.18
VAMP4-203ENST00000474047 MYT1LQ9UL68 1186 aa22.4■■□□□ 1.18
VAMP4-203ENST00000474047 CFDP1Q9UEE9 299 aaPredicted RBP22.38■■□□□ 1.17
VAMP4-203ENST00000474047 CDC42BPAQ5VT25 1732 aa22.38■■□□□ 1.17
VAMP4-203ENST00000474047 TIAM1Q13009 1591 aa22.37■■□□□ 1.17
VAMP4-203ENST00000474047 POGZQ7Z3K3 1410 aa22.37■■□□□ 1.17
VAMP4-203ENST00000474047 GPATCH8Q9UKJ3 1502 aaKnown RBP22.36■■□□□ 1.17
VAMP4-203ENST00000474047 ARID4BQ4LE39 1312 aaPredicted RBP22.35■■□□□ 1.17
VAMP4-203ENST00000474047 ILDR1Q86SU0 546 aaPredicted RBP22.34■■□□□ 1.17
VAMP4-203ENST00000474047 AFAP1Q8N556 730 aa22.34■■□□□ 1.17
VAMP4-203ENST00000474047 ZNF518AQ6AHZ1 1483 aa22.32■■□□□ 1.16
VAMP4-203ENST00000474047 ZMYM4Q5VZL5 1548 aa22.32■■□□□ 1.16
VAMP4-203ENST00000474047 MAGI2Q86UL8 1455 aa22.32■■□□□ 1.16
VAMP4-203ENST00000474047 SUPT6HQ7KZ85 1726 aaKnown RBP22.31■■□□□ 1.16
VAMP4-203ENST00000474047 ZFYVE16Q7Z3T8 1539 aa22.31■■□□□ 1.16
VAMP4-203ENST00000474047 LRRC9Q6ZRR7 1453 aa22.29■■□□□ 1.16
VAMP4-203ENST00000474047 ARHGEF40Q8TER5 1519 aa22.29■■□□□ 1.16
VAMP4-203ENST00000474047 ABCC1P33527 1531 aa22.28■■□□□ 1.16
VAMP4-203ENST00000474047 MAP3K1Q13233 1512 aa22.28■■□□□ 1.16
VAMP4-203ENST00000474047 NCOA2Q15596 1464 aa22.28■■□□□ 1.16
VAMP4-203ENST00000474047 YEATS2Q9ULM3 1422 aa22.27■■□□□ 1.16
VAMP4-203ENST00000474047 HNRNPMP52272 730 aaKnown RBP eCLIP22.27■■□□□ 1.16
VAMP4-203ENST00000474047 KANK4Q5T7N3 995 aaPredicted RBP22.27■■□□□ 1.16
VAMP4-203ENST00000474047 ITSN2Q9NZM3 1697 aa22.27■■□□□ 1.16
VAMP4-203ENST00000474047 TRAPPC8Q9Y2L5 1435 aa22.25■■□□□ 1.15
VAMP4-203ENST00000474047 PLEKHH2Q8IVE3 1493 aa22.25■■□□□ 1.15
VAMP4-203ENST00000474047 SAMD9LQ8IVG5 1584 aa22.25■■□□□ 1.15
VAMP4-203ENST00000474047 ARHGEF12Q9NZN5 1544 aa22.25■■□□□ 1.15
VAMP4-203ENST00000474047 KDM5CP41229 1560 aa22.22■■□□□ 1.15
VAMP4-203ENST00000474047 SYCP2Q9BX26 1530 aa22.22■■□□□ 1.15
VAMP4-203ENST00000474047 ATP10AO60312 1499 aa22.21■■□□□ 1.15
VAMP4-203ENST00000474047 ZNF644Q9H582 1327 aaPredicted RBP22.21■■□□□ 1.15
VAMP4-203ENST00000474047 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
VAMP4-203ENST00000474047 KIAA1107Q9UPP5 1409 aa22.21■■□□□ 1.15
VAMP4-203ENST00000474047 SPAG9O60271 1321 aaKnown RBP22.19■■□□□ 1.14
VAMP4-203ENST00000474047 MLH3Q9UHC1 1453 aa22.18■■□□□ 1.14
VAMP4-203ENST00000474047 C9orf84Q5VXU9 1444 aa22.18■■□□□ 1.14
VAMP4-203ENST00000474047 MLECQ14165 292 aa22.17■■□□□ 1.14
VAMP4-203ENST00000474047 BCORL1Q5H9F3 1711 aa22.15■■□□□ 1.14
VAMP4-203ENST00000474047 CAMSAP2Q08AD1 1489 aa22.12■■□□□ 1.13
VAMP4-203ENST00000474047 DIP2CQ9Y2E4 1556 aa22.11■■□□□ 1.13
VAMP4-203ENST00000474047 ADAMTSL3P82987 1691 aa22.11■■□□□ 1.13
VAMP4-203ENST00000474047 RSPH4AQ5TD94 716 aa22.11■■□□□ 1.13
VAMP4-203ENST00000474047 KIDINS220Q9ULH0 1771 aa22.1■■□□□ 1.13
VAMP4-203ENST00000474047 MYOM3Q5VTT5 1437 aa22.1■■□□□ 1.13
VAMP4-203ENST00000474047 ABCA6Q8N139 1617 aa22.1■■□□□ 1.13
VAMP4-203ENST00000474047 MBD5Q9P267 1494 aa22.08■■□□□ 1.13
VAMP4-203ENST00000474047 ATP7AQ04656 1500 aa22.08■■□□□ 1.13
VAMP4-203ENST00000474047 SIGLEC1Q9BZZ2 1709 aa22.08■■□□□ 1.12
VAMP4-203ENST00000474047 MADDQ8WXG6 1647 aa22.07■■□□□ 1.12
VAMP4-203ENST00000474047 TSPY4P0CV99 314 aa22.06■■□□□ 1.12
VAMP4-203ENST00000474047 TSPY10P0CW01 314 aa22.06■■□□□ 1.12
VAMP4-203ENST00000474047 MIA2Q96PC5 1412 aa22.06■■□□□ 1.12
VAMP4-203ENST00000474047 PLPPR3Q6T4P5 718 aa22.06■■□□□ 1.12
VAMP4-203ENST00000474047 PTPRMP28827 1452 aa22.05■■□□□ 1.12
VAMP4-203ENST00000474047 CCDC141Q6ZP82 1450 aa22.05■■□□□ 1.12
VAMP4-203ENST00000474047 ESF1Q9H501 851 aaKnown RBP22.04■■□□□ 1.12
VAMP4-203ENST00000474047 REREQ9P2R6 1566 aa22.04■■□□□ 1.12
VAMP4-203ENST00000474047 RIMS1Q86UR5 1692 aaKnown RBP22.03■■□□□ 1.12
VAMP4-203ENST00000474047 INO80Q9ULG1 1556 aaPredicted RBP22.03■■□□□ 1.12
VAMP4-203ENST00000474047 RTEL1-TNFRSF6BF6WH68 1400 aa22.01■■□□□ 1.11
VAMP4-203ENST00000474047 ARHGEF5Q12774 1597 aa22■■□□□ 1.11
VAMP4-203ENST00000474047 AGLP35573 1532 aa21.99■■□□□ 1.11
VAMP4-203ENST00000474047 A2MP01023 1474 aa21.99■■□□□ 1.11
VAMP4-203ENST00000474047 FER1L4A9Z1Z3 1794 aa21.99■■□□□ 1.11
VAMP4-203ENST00000474047 ADGBQ8N7X0 1667 aa21.96■■□□□ 1.11
VAMP4-203ENST00000474047 PTPN23Q9H3S7 1636 aa21.96■■□□□ 1.11
VAMP4-203ENST00000474047 FGD6Q6ZV73 1430 aa21.96■■□□□ 1.11
VAMP4-203ENST00000474047 PPARGC1BQ86YN6 1023 aaKnown RBP21.95■■□□□ 1.1
VAMP4-203ENST00000474047 GGT6Q6P531 493 aa21.93■■□□□ 1.1
VAMP4-203ENST00000474047 DHX29Q7Z478 1369 aaKnown RBP21.92■■□□□ 1.1
VAMP4-203ENST00000474047 FAM50AQ14320 339 aaKnown RBP21.92■■□□□ 1.1
VAMP4-203ENST00000474047 CEBPAP49715 358 aaPredicted RBP21.89■■□□□ 1.1
VAMP4-203ENST00000474047 PLXNC1O60486 1568 aa21.89■■□□□ 1.09
VAMP4-203ENST00000474047 KIF3BO15066 747 aa21.89■■□□□ 1.09
VAMP4-203ENST00000474047 TCOF1Q13428 1488 aaKnown RBP21.87■■□□□ 1.09
VAMP4-203ENST00000474047 CNTLNQ9NXG0 1405 aa21.86■■□□□ 1.09
VAMP4-203ENST00000474047 MAST1Q9Y2H9 1570 aa21.86■■□□□ 1.09
VAMP4-203ENST00000474047 ABCC5O15440 1437 aa21.85■■□□□ 1.09
VAMP4-203ENST00000474047 DAPK1P53355 1430 aa21.84■■□□□ 1.09
VAMP4-203ENST00000474047 CHIC2Q9UKJ5 165 aa21.83■■□□□ 1.09
VAMP4-203ENST00000474047 PPP6R1Q9UPN7 881 aa21.83■■□□□ 1.09
VAMP4-203ENST00000474047 RRP7BPQ9NSQ0 103 aa21.82■■□□□ 1.08
VAMP4-203ENST00000474047 DNMT1P26358 1616 aaKnown RBP21.82■■□□□ 1.08
VAMP4-203ENST00000474047 SHANK2Q9UPX8 1470 aa21.81■■□□□ 1.08
VAMP4-203ENST00000474047 CROCC2H7BZ55 1655 aa21.8■■□□□ 1.08
VAMP4-203ENST00000474047 ZMYM3Q14202 1370 aa21.78■■□□□ 1.08
VAMP4-203ENST00000474047 KIF15Q9NS87 1388 aa21.78■■□□□ 1.08
VAMP4-203ENST00000474047 ANKRD30AQ9BXX3 1397 aa21.77■■□□□ 1.08
VAMP4-203ENST00000474047 C3P01024 1663 aa21.77■■□□□ 1.08
VAMP4-203ENST00000474047 CLTCQ00610 1675 aaKnown RBP21.77■■□□□ 1.08
VAMP4-203ENST00000474047 WASHC2CQ9Y4E1 1318 aa21.76■■□□□ 1.07
VAMP4-203ENST00000474047 DUOX2Q9NRD8 1548 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms