RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 EHBP1L1Q8N3D4 1523 aa30.17■■■□□ 2.42
PTCD3-210ENST00000473829 MTUS2Q5JR59 1369 aa30.17■■■□□ 2.42
PTCD3-210ENST00000473829 TIAM1Q13009 1591 aa30.17■■■□□ 2.42
PTCD3-210ENST00000473829 EFCAB2Q5VUJ9 269 aa30.13■■■□□ 2.41
PTCD3-210ENST00000473829 SCAPERQ9BY12 1400 aa30.12■■■□□ 2.41
PTCD3-210ENST00000473829 POGZQ7Z3K3 1410 aa30.1■■■□□ 2.41
PTCD3-210ENST00000473829 ZMYM4Q5VZL5 1548 aa30.09■■■□□ 2.41
PTCD3-210ENST00000473829 GPATCH8Q9UKJ3 1502 aaKnown RBP30.09■■■□□ 2.41
PTCD3-210ENST00000473829 ABCC1P33527 1531 aa30.06■■■□□ 2.4
PTCD3-210ENST00000473829 ARHGEF40Q8TER5 1519 aa30.06■■■□□ 2.4
PTCD3-210ENST00000473829 KDM4FA0A1W2PPD8 638 aa30.04■■■□□ 2.4
PTCD3-210ENST00000473829 SAMD9LQ8IVG5 1584 aa30.03■■■□□ 2.4
PTCD3-210ENST00000473829 SUPT6HQ7KZ85 1726 aaKnown RBP30.02■■■□□ 2.4
PTCD3-210ENST00000473829 MAP3K1Q13233 1512 aa30.02■■■□□ 2.4
PTCD3-210ENST00000473829 ITSN2Q9NZM3 1697 aa30.02■■■□□ 2.4
PTCD3-210ENST00000473829 ARHGEF12Q9NZN5 1544 aa30.01■■■□□ 2.4
PTCD3-210ENST00000473829 LRRC9Q6ZRR7 1453 aa30.01■■■□□ 2.4
PTCD3-210ENST00000473829 CCNB3Q8WWL7 1395 aa30.01■■■□□ 2.39
PTCD3-210ENST00000473829 NCOA2Q15596 1464 aa29.99■■■□□ 2.39
PTCD3-210ENST00000473829 KDM5CP41229 1560 aa29.98■■■□□ 2.39
PTCD3-210ENST00000473829 YEATS2Q9ULM3 1422 aa29.98■■■□□ 2.39
PTCD3-210ENST00000473829 ZFYVE16Q7Z3T8 1539 aa29.98■■■□□ 2.39
PTCD3-210ENST00000473829 ZNF518AQ6AHZ1 1483 aa29.98■■■□□ 2.39
PTCD3-210ENST00000473829 MAGI2Q86UL8 1455 aa29.94■■■□□ 2.38
PTCD3-210ENST00000473829 TRAPPC8Q9Y2L5 1435 aa29.94■■■□□ 2.38
PTCD3-210ENST00000473829 SYCP2Q9BX26 1530 aa29.93■■■□□ 2.38
PTCD3-210ENST00000473829 KANK4Q5T7N3 995 aaPredicted RBP29.93■■■□□ 2.38
PTCD3-210ENST00000473829 AEBP2Q6ZN18 517 aaPredicted RBP29.93■■■□□ 2.38
PTCD3-210ENST00000473829 SIGLEC1Q9BZZ2 1709 aa29.93■■■□□ 2.38
PTCD3-210ENST00000473829 AFAP1Q8N556 730 aa29.92■■■□□ 2.38
PTCD3-210ENST00000473829 ZNF777Q9ULD5 760 aaPredicted RBP29.92■■■□□ 2.38
PTCD3-210ENST00000473829 CFDP1Q9UEE9 299 aaPredicted RBP29.91■■■□□ 2.38
PTCD3-210ENST00000473829 HECW2Q9P2P5 1572 aa29.9■■■□□ 2.38
PTCD3-210ENST00000473829 PLEKHH2Q8IVE3 1493 aa29.84■■■□□ 2.37
PTCD3-210ENST00000473829 BCORL1Q5H9F3 1711 aa29.83■■■□□ 2.37
PTCD3-210ENST00000473829 ABCA6Q8N139 1617 aa29.83■■■□□ 2.37
PTCD3-210ENST00000473829 KIAA1107Q9UPP5 1409 aa29.83■■■□□ 2.37
PTCD3-210ENST00000473829 ZNF644Q9H582 1327 aaPredicted RBP29.83■■■□□ 2.37
PTCD3-210ENST00000473829 DIP2CQ9Y2E4 1556 aa29.82■■■□□ 2.36
PTCD3-210ENST00000473829 MLH3Q9UHC1 1453 aa29.82■■■□□ 2.36
PTCD3-210ENST00000473829 HNRNPMP52272 730 aaKnown RBP eCLIP29.81■■■□□ 2.36
PTCD3-210ENST00000473829 KIDINS220Q9ULH0 1771 aa29.81■■■□□ 2.36
PTCD3-210ENST00000473829 ADAMTSL3P82987 1691 aa29.81■■■□□ 2.36
PTCD3-210ENST00000473829 ATP10AO60312 1499 aa29.8■■■□□ 2.36
PTCD3-210ENST00000473829 C9orf84Q5VXU9 1444 aa29.78■■■□□ 2.36
PTCD3-210ENST00000473829 CAMSAP2Q08AD1 1489 aa29.77■■■□□ 2.36
PTCD3-210ENST00000473829 APLP2Q06481 763 aa29.77■■■□□ 2.36
PTCD3-210ENST00000473829 MBD5Q9P267 1494 aa29.76■■■□□ 2.35
PTCD3-210ENST00000473829 ARID4BQ4LE39 1312 aaPredicted RBP29.75■■■□□ 2.35
PTCD3-210ENST00000473829 INO80Q9ULG1 1556 aaPredicted RBP29.74■■■□□ 2.35
PTCD3-210ENST00000473829 MADDQ8WXG6 1647 aa29.72■■■□□ 2.35
PTCD3-210ENST00000473829 MYT1LQ9UL68 1186 aa29.72■■■□□ 2.35
PTCD3-210ENST00000473829 REREQ9P2R6 1566 aa29.72■■■□□ 2.35
PTCD3-210ENST00000473829 ATP7AQ04656 1500 aa29.71■■■□□ 2.35
PTCD3-210ENST00000473829 MYOM3Q5VTT5 1437 aa29.71■■■□□ 2.35
PTCD3-210ENST00000473829 SPAG9O60271 1321 aaKnown RBP29.68■■■□□ 2.34
PTCD3-210ENST00000473829 MIA2Q96PC5 1412 aa29.64■■■□□ 2.34
PTCD3-210ENST00000473829 CCDC141Q6ZP82 1450 aa29.64■■■□□ 2.34
PTCD3-210ENST00000473829 ARHGEF5Q12774 1597 aa29.64■■■□□ 2.33
PTCD3-210ENST00000473829 RIMS1Q86UR5 1692 aaKnown RBP29.63■■■□□ 2.33
PTCD3-210ENST00000473829 PTPRMP28827 1452 aa29.61■■■□□ 2.33
PTCD3-210ENST00000473829 FER1L4A9Z1Z3 1794 aa29.6■■■□□ 2.33
PTCD3-210ENST00000473829 AGLP35573 1532 aa29.6■■■□□ 2.33
PTCD3-210ENST00000473829 MLECQ14165 292 aa29.59■■■□□ 2.33
PTCD3-210ENST00000473829 PTPN23Q9H3S7 1636 aa29.57■■■□□ 2.32
PTCD3-210ENST00000473829 PLXNC1O60486 1568 aa29.57■■■□□ 2.32
PTCD3-210ENST00000473829 ADGBQ8N7X0 1667 aa29.56■■■□□ 2.32
PTCD3-210ENST00000473829 RTEL1-TNFRSF6BF6WH68 1400 aa29.54■■■□□ 2.32
PTCD3-210ENST00000473829 FGD6Q6ZV73 1430 aa29.54■■■□□ 2.32
PTCD3-210ENST00000473829 A2MP01023 1474 aa29.53■■■□□ 2.32
PTCD3-210ENST00000473829 RSPH4AQ5TD94 716 aa29.5■■■□□ 2.31
PTCD3-210ENST00000473829 TCOF1Q13428 1488 aaKnown RBP29.49■■■□□ 2.31
PTCD3-210ENST00000473829 MAST1Q9Y2H9 1570 aa29.49■■■□□ 2.31
PTCD3-210ENST00000473829 CROCC2H7BZ55 1655 aa29.47■■■□□ 2.31
PTCD3-210ENST00000473829 DNMT1P26358 1616 aaKnown RBP29.42■■■□□ 2.3
PTCD3-210ENST00000473829 ABCC5O15440 1437 aa29.41■■■□□ 2.3
PTCD3-210ENST00000473829 TSPY4P0CV99 314 aa29.4■■■□□ 2.3
PTCD3-210ENST00000473829 TSPY10P0CW01 314 aa29.4■■■□□ 2.3
PTCD3-210ENST00000473829 PPARGC1BQ86YN6 1023 aaKnown RBP29.4■■■□□ 2.3
PTCD3-210ENST00000473829 DHX29Q7Z478 1369 aaKnown RBP29.39■■■□□ 2.3
PTCD3-210ENST00000473829 DAPK1P53355 1430 aa29.37■■■□□ 2.29
PTCD3-210ENST00000473829 SHANK2Q9UPX8 1470 aa29.37■■■□□ 2.29
PTCD3-210ENST00000473829 PLPPR3Q6T4P5 718 aa29.36■■■□□ 2.29
PTCD3-210ENST00000473829 C3P01024 1663 aa29.34■■■□□ 2.29
PTCD3-210ENST00000473829 CLTCQ00610 1675 aaKnown RBP29.31■■■□□ 2.28
PTCD3-210ENST00000473829 CEBPAP49715 358 aaPredicted RBP29.3■■■□□ 2.28
PTCD3-210ENST00000473829 MROH2AA6NES4 1674 aa29.3■■■□□ 2.28
PTCD3-210ENST00000473829 CNTLNQ9NXG0 1405 aa29.28■■■□□ 2.28
PTCD3-210ENST00000473829 GGT6Q6P531 493 aa29.28■■■□□ 2.28
PTCD3-210ENST00000473829 FAM50AQ14320 339 aaKnown RBP29.27■■■□□ 2.28
PTCD3-210ENST00000473829 LMTK3Q96Q04 1460 aa29.26■■■□□ 2.27
PTCD3-210ENST00000473829 EIF2AK4Q9P2K8 1649 aaKnown RBP29.25■■■□□ 2.27
PTCD3-210ENST00000473829 KIF3BO15066 747 aa29.25■■■□□ 2.27
PTCD3-210ENST00000473829 DUOX2Q9NRD8 1548 aa29.25■■■□□ 2.27
PTCD3-210ENST00000473829 ESF1Q9H501 851 aaKnown RBP29.24■■■□□ 2.27
PTCD3-210ENST00000473829 RNF17Q9BXT8 1623 aaKnown RBP29.23■■■□□ 2.27
PTCD3-210ENST00000473829 KIF15Q9NS87 1388 aa29.23■■■□□ 2.27
PTCD3-210ENST00000473829 CHIC2Q9UKJ5 165 aa29.2■■■□□ 2.26
PTCD3-210ENST00000473829 PREX1Q8TCU6 1659 aa29.2■■■□□ 2.26
PTCD3-210ENST00000473829 MROH1Q8NDA8 1641 aa29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms