RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 RRP7BPQ9NSQ0 103 aa8.31□□□□□ -1.08
HERC4-209ENST00000473533 KTN1Q86UP2 1357 aaKnown RBP8.31□□□□□ -1.08
HERC4-209ENST00000473533 WDR62O43379 1518 aa8.31□□□□□ -1.08
HERC4-209ENST00000473533 SMG6Q86US8 1419 aaKnown RBP8.3□□□□□ -1.08
HERC4-209ENST00000473533 ANKRD30BQ9BXX2 1392 aa8.3□□□□□ -1.08
HERC4-209ENST00000473533 DAPK1P53355 1430 aa8.3□□□□□ -1.08
HERC4-209ENST00000473533 L3MBTL2Q969R5 705 aa8.3□□□□□ -1.08
HERC4-209ENST00000473533 TDRD9Q8NDG6 1382 aaKnown RBP8.29□□□□□ -1.08
HERC4-209ENST00000473533 PBRM1Q86U86 1689 aa8.29□□□□□ -1.08
HERC4-209ENST00000473533 TEX14Q8IWB6 1497 aa8.29□□□□□ -1.08
HERC4-209ENST00000473533 MAGI3Q5TCQ9 1506 aa8.29□□□□□ -1.08
HERC4-209ENST00000473533 ITSN2Q9NZM3 1697 aa8.29□□□□□ -1.08
HERC4-209ENST00000473533 ADAMTS12P58397 1594 aa8.28□□□□□ -1.08
HERC4-209ENST00000473533 TARBP1Q13395 1621 aaKnown RBP8.28□□□□□ -1.08
HERC4-209ENST00000473533 ADGBQ8N7X0 1667 aa8.27□□□□□ -1.08
HERC4-209ENST00000473533 ANP32AP39687 249 aaKnown RBP8.27□□□□□ -1.09
HERC4-209ENST00000473533 FAM9BQ8IZU0 186 aa8.27□□□□□ -1.09
HERC4-209ENST00000473533 CHIC2Q9UKJ5 165 aa8.27□□□□□ -1.09
HERC4-209ENST00000473533 DENND4BO75064 1496 aaPredicted RBP8.27□□□□□ -1.09
HERC4-209ENST00000473533 SPATA31E1Q6ZUB1 1445 aa8.27□□□□□ -1.09
HERC4-209ENST00000473533 SLC4A1APQ9BWU0 796 aaKnown RBP8.26□□□□□ -1.09
HERC4-209ENST00000473533 NUDCQ9Y266 331 aa8.26□□□□□ -1.09
HERC4-209ENST00000473533 KIF14Q15058 1648 aa8.26□□□□□ -1.09
HERC4-209ENST00000473533 KIF7Q2M1P5 1343 aa8.25□□□□□ -1.09
HERC4-209ENST00000473533 MSH5O43196 834 aa8.25□□□□□ -1.09
HERC4-209ENST00000473533 NOP58Q9Y2X3 529 aaKnown RBP8.25□□□□□ -1.09
HERC4-209ENST00000473533 ABCC5O15440 1437 aa8.25□□□□□ -1.09
HERC4-209ENST00000473533 ADGRL2O95490 1459 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 KIAA1107Q9UPP5 1409 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 KIAA0586Q9BVV6 1533 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 ARHGEF12Q9NZN5 1544 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 CDK13Q14004 1512 aaKnown RBP8.24□□□□□ -1.09
HERC4-209ENST00000473533 KDM6BO15054 1643 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 RAPGEF6Q8TEU7 1601 aa8.24□□□□□ -1.09
HERC4-209ENST00000473533 IRX6P78412 446 aaPredicted RBP8.23□□□□□ -1.09
HERC4-209ENST00000473533 RNF123Q5XPI4 1314 aa8.23□□□□□ -1.09
HERC4-209ENST00000473533 CCDC136Q96JN2 1154 aa8.23□□□□□ -1.09
HERC4-209ENST00000473533 ANKRD30AQ9BXX3 1397 aa8.23□□□□□ -1.09
HERC4-209ENST00000473533 KIAA0556O60303 1618 aa8.23□□□□□ -1.09
HERC4-209ENST00000473533 MBD5Q9P267 1494 aa8.23□□□□□ -1.09
HERC4-209ENST00000473533 KIF15Q9NS87 1388 aa8.22□□□□□ -1.09
HERC4-209ENST00000473533 RTL5Q5HYW3 569 aaPredicted RBP8.22□□□□□ -1.09
HERC4-209ENST00000473533 TROQ12816 1431 aaPredicted RBP8.22□□□□□ -1.09
HERC4-209ENST00000473533 UHRF1BP1Q6BDS2 1440 aa8.22□□□□□ -1.09
HERC4-209ENST00000473533 ADCY10Q96PN6 1610 aa8.22□□□□□ -1.09
HERC4-209ENST00000473533 USP47Q96K76 1375 aa8.22□□□□□ -1.09
HERC4-209ENST00000473533 RALBP1Q15311 655 aa8.22□□□□□ -1.09
HERC4-209ENST00000473533 BRD4O60885 1362 aaPredicted RBP8.21□□□□□ -1.09
HERC4-209ENST00000473533 RALGAPBQ86X10 1494 aa8.21□□□□□ -1.09
HERC4-209ENST00000473533 PDE3BQ13370 1112 aa8.21□□□□□ -1.1
HERC4-209ENST00000473533 IFT140Q96RY7 1462 aa8.21□□□□□ -1.1
HERC4-209ENST00000473533 MRC2Q9UBG0 1479 aa8.21□□□□□ -1.1
HERC4-209ENST00000473533 SHANK2Q9UPX8 1470 aa8.21□□□□□ -1.1
HERC4-209ENST00000473533 B4GALNT3Q6L9W6 998 aa8.21□□□□□ -1.1
HERC4-209ENST00000473533 CROCC2H7BZ55 1655 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 TMC1Q8TDI8 760 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 INSRP06213 1382 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 PZPP20742 1482 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 CAMSAP2Q08AD1 1489 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 NBPF8Q3BBV2 869 aa8.2□□□□□ -1.1
HERC4-209ENST00000473533 DHX29Q7Z478 1369 aaKnown RBP8.19□□□□□ -1.1
HERC4-209ENST00000473533 KDM5CP41229 1560 aa8.19□□□□□ -1.1
HERC4-209ENST00000473533 IPO9Q96P70 1041 aaKnown RBP8.19□□□□□ -1.1
HERC4-209ENST00000473533 ZBTB47Q9UFB7 747 aaPredicted RBP8.19□□□□□ -1.1
HERC4-209ENST00000473533 CFDP1Q9UEE9 299 aaPredicted RBP8.19□□□□□ -1.1
HERC4-209ENST00000473533 ZMYM4Q5VZL5 1548 aa8.19□□□□□ -1.1
HERC4-209ENST00000473533 NUP153P49790 1475 aaKnown RBP8.18□□□□□ -1.1
HERC4-209ENST00000473533 KDM5DQ9BY66 1539 aa8.18□□□□□ -1.1
HERC4-209ENST00000473533 MYBBP1AQ9BQG0 1328 aaKnown RBP8.18□□□□□ -1.1
HERC4-209ENST00000473533 C11orf95C9JLR9 678 aaPredicted RBP8.18□□□□□ -1.1
HERC4-209ENST00000473533 TCERG1O14776 1098 aaKnown RBP8.18□□□□□ -1.1
HERC4-209ENST00000473533 CARMIL2Q6F5E8 1435 aa8.18□□□□□ -1.1
HERC4-209ENST00000473533 CCDC184Q52MB2 194 aa8.17□□□□□ -1.1
HERC4-209ENST00000473533 MS4A1P11836 297 aa8.17□□□□□ -1.1
HERC4-209ENST00000473533 WASHC2CQ9Y4E1 1318 aa8.17□□□□□ -1.1
HERC4-209ENST00000473533 DEKP35659 375 aaKnown RBP8.17□□□□□ -1.1
HERC4-209ENST00000473533 DISP1Q96F81 1524 aa8.16□□□□□ -1.1
HERC4-209ENST00000473533 USP35Q9P2H5 1018 aa8.16□□□□□ -1.1
HERC4-209ENST00000473533 ANKRD50Q9ULJ7 1429 aa8.16□□□□□ -1.1
HERC4-209ENST00000473533 PLEKHH2Q8IVE3 1493 aa8.16□□□□□ -1.1
HERC4-209ENST00000473533 PNISRQ8TF01 805 aaKnown RBP8.16□□□□□ -1.1
HERC4-209ENST00000473533 DNAJC5Q9H3Z4 198 aa8.16□□□□□ -1.1
HERC4-209ENST00000473533 LRPPRCP42704 1394 aaKnown RBP8.16□□□□□ -1.1
HERC4-209ENST00000473533 FOXD1Q16676 465 aa8.15□□□□□ -1.1
HERC4-209ENST00000473533 CARD11Q9BXL7 1154 aa8.15□□□□□ -1.1
HERC4-209ENST00000473533 GPATCH8Q9UKJ3 1502 aaKnown RBP8.15□□□□□ -1.11
HERC4-209ENST00000473533 PKD2Q13563 968 aa8.15□□□□□ -1.11
HERC4-209ENST00000473533 GRIN2AQ12879 1464 aa8.14□□□□□ -1.11
HERC4-209ENST00000473533 DDRGK1Q96HY6 314 aa8.14□□□□□ -1.11
HERC4-209ENST00000473533 MAGI1Q96QZ7 1491 aaPredicted RBP8.14□□□□□ -1.11
HERC4-209ENST00000473533 RSPH4AQ5TD94 716 aa8.14□□□□□ -1.11
HERC4-209ENST00000473533 PPM1GO15355 546 aaPredicted RBP8.14□□□□□ -1.11
HERC4-209ENST00000473533 NLRP13Q86W25 1043 aa8.14□□□□□ -1.11
HERC4-209ENST00000473533 BCORL1Q5H9F3 1711 aa8.13□□□□□ -1.11
HERC4-209ENST00000473533 TSPY4P0CV99 314 aa8.13□□□□□ -1.11
HERC4-209ENST00000473533 TSPY10P0CW01 314 aa8.13□□□□□ -1.11
HERC4-209ENST00000473533 RRP1P56182 461 aaKnown RBP8.13□□□□□ -1.11
HERC4-209ENST00000473533 POLR3GLQ9BT43 218 aa8.13□□□□□ -1.11
HERC4-209ENST00000473533 ARHGEF5Q12774 1597 aa8.13□□□□□ -1.11
HERC4-209ENST00000473533 CEP170Q5SW79 1584 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms