RNA–Protein interactions for RNA: ENST00000472892.1

VTI1A-203, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best)

Gene VTI1A, Length 1,247 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-203ENST00000472892 MAGI2Q86UL8 1455 aa24.85■■□□□ 1.57
VTI1A-203ENST00000472892 CCDC18Q5T9S5 1454 aa24.83■■□□□ 1.57
VTI1A-203ENST00000472892 POGZQ7Z3K3 1410 aa24.83■■□□□ 1.57
VTI1A-203ENST00000472892 PCF11O94913 1555 aaKnown RBP24.83■■□□□ 1.57
VTI1A-203ENST00000472892 HECW2Q9P2P5 1572 aa24.83■■□□□ 1.57
VTI1A-203ENST00000472892 MYO5CQ9NQX4 1742 aa24.83■■□□□ 1.57
VTI1A-203ENST00000472892 PTPRMP28827 1452 aa24.82■■□□□ 1.56
VTI1A-203ENST00000472892 BCORL1Q5H9F3 1711 aa24.81■■□□□ 1.56
VTI1A-203ENST00000472892 YEATS2Q9ULM3 1422 aa24.81■■□□□ 1.56
VTI1A-203ENST00000472892 ZFYVE16Q7Z3T8 1539 aa24.8■■□□□ 1.56
VTI1A-203ENST00000472892 FYCO1Q9BQS8 1478 aa24.78■■□□□ 1.56
VTI1A-203ENST00000472892 ARHGAP5Q13017 1502 aa24.76■■□□□ 1.55
VTI1A-203ENST00000472892 MADDQ8WXG6 1647 aa24.73■■□□□ 1.55
VTI1A-203ENST00000472892 AFAP1Q8N556 730 aa24.73■■□□□ 1.55
VTI1A-203ENST00000472892 ATP10AO60312 1499 aa24.71■■□□□ 1.55
VTI1A-203ENST00000472892 ZNF518AQ6AHZ1 1483 aa24.71■■□□□ 1.55
VTI1A-203ENST00000472892 SIGLEC1Q9BZZ2 1709 aa24.69■■□□□ 1.54
VTI1A-203ENST00000472892 CDC42BPBQ9Y5S2 1711 aa24.69■■□□□ 1.54
VTI1A-203ENST00000472892 PREX2Q70Z35 1606 aa24.66■■□□□ 1.54
VTI1A-203ENST00000472892 C9orf84Q5VXU9 1444 aa24.66■■□□□ 1.54
VTI1A-203ENST00000472892 KDM5CP41229 1560 aa24.66■■□□□ 1.54
VTI1A-203ENST00000472892 MLECQ14165 292 aa24.65■■□□□ 1.54
VTI1A-203ENST00000472892 ARHGEF12Q9NZN5 1544 aa24.63■■□□□ 1.53
VTI1A-203ENST00000472892 RIMS1Q86UR5 1692 aaKnown RBP24.62■■□□□ 1.53
VTI1A-203ENST00000472892 TRAPPC8Q9Y2L5 1435 aa24.61■■□□□ 1.53
VTI1A-203ENST00000472892 MLH3Q9UHC1 1453 aa24.61■■□□□ 1.53
VTI1A-203ENST00000472892 ABCC1P33527 1531 aa24.61■■□□□ 1.53
VTI1A-203ENST00000472892 MYT1LQ9UL68 1186 aa24.6■■□□□ 1.53
VTI1A-203ENST00000472892 CDC42BPAQ5VT25 1732 aa24.6■■□□□ 1.53
VTI1A-203ENST00000472892 GPATCH8Q9UKJ3 1502 aaKnown RBP24.6■■□□□ 1.53
VTI1A-203ENST00000472892 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
VTI1A-203ENST00000472892 ZNF777Q9ULD5 760 aaPredicted RBP24.56■■□□□ 1.52
VTI1A-203ENST00000472892 LMTK3Q96Q04 1460 aa24.55■■□□□ 1.52
VTI1A-203ENST00000472892 MTUS2Q5JR59 1369 aa24.54■■□□□ 1.52
VTI1A-203ENST00000472892 DIP2CQ9Y2E4 1556 aa24.54■■□□□ 1.52
VTI1A-203ENST00000472892 ITSN2Q9NZM3 1697 aa24.54■■□□□ 1.52
VTI1A-203ENST00000472892 PLPPR3Q6T4P5 718 aa24.54■■□□□ 1.52
VTI1A-203ENST00000472892 REREQ9P2R6 1566 aa24.53■■□□□ 1.52
VTI1A-203ENST00000472892 ILDR1Q86SU0 546 aaPredicted RBP24.52■■□□□ 1.52
VTI1A-203ENST00000472892 CFDP1Q9UEE9 299 aaPredicted RBP24.52■■□□□ 1.52
VTI1A-203ENST00000472892 CCNB3Q8WWL7 1395 aa24.52■■□□□ 1.52
VTI1A-203ENST00000472892 FER1L4A9Z1Z3 1794 aa24.51■■□□□ 1.51
VTI1A-203ENST00000472892 SAMD9LQ8IVG5 1584 aa24.5■■□□□ 1.51
VTI1A-203ENST00000472892 HNRNPMP52272 730 aaKnown RBP eCLIP24.5■■□□□ 1.51
VTI1A-203ENST00000472892 KIAA1107Q9UPP5 1409 aa24.5■■□□□ 1.51
VTI1A-203ENST00000472892 ABCA6Q8N139 1617 aa24.5■■□□□ 1.51
VTI1A-203ENST00000472892 LOC105371045A0A1W2PR82 267 aa24.48■■□□□ 1.51
VTI1A-203ENST00000472892 AGLP35573 1532 aa24.47■■□□□ 1.51
VTI1A-203ENST00000472892 KIDINS220Q9ULH0 1771 aa24.47■■□□□ 1.51
VTI1A-203ENST00000472892 PLEKHH2Q8IVE3 1493 aa24.46■■□□□ 1.51
VTI1A-203ENST00000472892 SYCP2Q9BX26 1530 aa24.45■■□□□ 1.51
VTI1A-203ENST00000472892 SPAG9O60271 1321 aaKnown RBP24.45■■□□□ 1.5
VTI1A-203ENST00000472892 CEBPAP49715 358 aaPredicted RBP24.45■■□□□ 1.5
VTI1A-203ENST00000472892 HSPA2P54652 639 aa24.44■■□□□ 1.5
VTI1A-203ENST00000472892 EHBP1L1Q8N3D4 1523 aa24.43■■□□□ 1.5
VTI1A-203ENST00000472892 ZNF644Q9H582 1327 aaPredicted RBP24.39■■□□□ 1.5
VTI1A-203ENST00000472892 TIAM1Q13009 1591 aa24.39■■□□□ 1.5
VTI1A-203ENST00000472892 ESF1Q9H501 851 aaKnown RBP24.37■■□□□ 1.49
VTI1A-203ENST00000472892 ATP7AQ04656 1500 aa24.35■■□□□ 1.49
VTI1A-203ENST00000472892 MBD5Q9P267 1494 aa24.34■■□□□ 1.49
VTI1A-203ENST00000472892 VPS8Q8N3P4 1428 aa24.34■■□□□ 1.49
VTI1A-203ENST00000472892 NCOA2Q15596 1464 aa24.32■■□□□ 1.48
VTI1A-203ENST00000472892 INO80Q9ULG1 1556 aaPredicted RBP24.32■■□□□ 1.48
VTI1A-203ENST00000472892 CNTLNQ9NXG0 1405 aa24.31■■□□□ 1.48
VTI1A-203ENST00000472892 PREX1Q8TCU6 1659 aa24.3■■□□□ 1.48
VTI1A-203ENST00000472892 A2MP01023 1474 aa24.3■■□□□ 1.48
VTI1A-203ENST00000472892 SETD1BQ9UPS6 1966 aaKnown RBP24.29■■□□□ 1.48
VTI1A-203ENST00000472892 C3P01024 1663 aa24.27■■□□□ 1.48
VTI1A-203ENST00000472892 RTEL1-TNFRSF6BF6WH68 1400 aa24.27■■□□□ 1.48
VTI1A-203ENST00000472892 UHRF1BP1Q6BDS2 1440 aa24.27■■□□□ 1.48
VTI1A-203ENST00000472892 SUPT6HQ7KZ85 1726 aaKnown RBP24.27■■□□□ 1.48
VTI1A-203ENST00000472892 PLXNC1O60486 1568 aa24.26■■□□□ 1.47
VTI1A-203ENST00000472892 RSPH4AQ5TD94 716 aa24.26■■□□□ 1.47
VTI1A-203ENST00000472892 FBXO41Q8TF61 875 aa24.25■■□□□ 1.47
VTI1A-203ENST00000472892 LRRC9Q6ZRR7 1453 aa24.25■■□□□ 1.47
VTI1A-203ENST00000472892 ZMYM3Q14202 1370 aa24.24■■□□□ 1.47
VTI1A-203ENST00000472892 MAP3K1Q13233 1512 aa24.22■■□□□ 1.47
VTI1A-203ENST00000472892 PPP6R1Q9UPN7 881 aa24.22■■□□□ 1.47
VTI1A-203ENST00000472892 KANK4Q5T7N3 995 aaPredicted RBP24.21■■□□□ 1.47
VTI1A-203ENST00000472892 GGT6Q6P531 493 aa24.21■■□□□ 1.47
VTI1A-203ENST00000472892 CAMSAP2Q08AD1 1489 aa24.2■■□□□ 1.47
VTI1A-203ENST00000472892 DHX29Q7Z478 1369 aaKnown RBP24.2■■□□□ 1.46
VTI1A-203ENST00000472892 ADGBQ8N7X0 1667 aa24.2■■□□□ 1.46
VTI1A-203ENST00000472892 CCDC141Q6ZP82 1450 aa24.19■■□□□ 1.46
VTI1A-203ENST00000472892 DMRT2Q9Y5R5 561 aa24.19■■□□□ 1.46
VTI1A-203ENST00000472892 NPATQ14207 1427 aa24.18■■□□□ 1.46
VTI1A-203ENST00000472892 MROH2AA6NES4 1674 aa24.18■■□□□ 1.46
VTI1A-203ENST00000472892 TSPY4P0CV99 314 aa24.14■■□□□ 1.45
VTI1A-203ENST00000472892 TSPY10P0CW01 314 aa24.14■■□□□ 1.45
VTI1A-203ENST00000472892 STRCQ7RTU9 1775 aa24.14■■□□□ 1.45
VTI1A-203ENST00000472892 ARHGEF5Q12774 1597 aa24.12■■□□□ 1.45
VTI1A-203ENST00000472892 CLTCQ00610 1675 aaKnown RBP24.12■■□□□ 1.45
VTI1A-203ENST00000472892 KIF3BO15066 747 aa24.1■■□□□ 1.45
VTI1A-203ENST00000472892 CERKQ8TCT0 537 aa24.1■■□□□ 1.45
VTI1A-203ENST00000472892 PTPRKQ15262 1439 aa24.1■■□□□ 1.45
VTI1A-203ENST00000472892 MIA2Q96PC5 1412 aa24.09■■□□□ 1.45
VTI1A-203ENST00000472892 PTPRTO14522 1441 aa24.07■■□□□ 1.44
VTI1A-203ENST00000472892 MYOM3Q5VTT5 1437 aa24.07■■□□□ 1.44
VTI1A-203ENST00000472892 NCOA1Q15788 1441 aa24.05■■□□□ 1.44
VTI1A-203ENST00000472892 APLP2Q06481 763 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms