RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SCAPERQ9BY12 1400 aa25.56■■□□□ 1.68
CCDC88B-205ENST00000472524 ZFYVE16Q7Z3T8 1539 aa25.55■■□□□ 1.68
CCDC88B-205ENST00000472524 CLIP1P30622 1438 aa25.54■■□□□ 1.68
CCDC88B-205ENST00000472524 POGZQ7Z3K3 1410 aa25.54■■□□□ 1.68
CCDC88B-205ENST00000472524 CASKIN1Q8WXD9 1431 aa25.54■■□□□ 1.68
CCDC88B-205ENST00000472524 TROQ12816 1431 aaPredicted RBP25.53■■□□□ 1.68
CCDC88B-205ENST00000472524 MAGI2Q86UL8 1455 aa25.52■■□□□ 1.68
CCDC88B-205ENST00000472524 LMTK3Q96Q04 1460 aa25.51■■□□□ 1.67
CCDC88B-205ENST00000472524 CCDC18Q5T9S5 1454 aa25.5■■□□□ 1.67
CCDC88B-205ENST00000472524 EFCAB2Q5VUJ9 269 aa25.5■■□□□ 1.67
CCDC88B-205ENST00000472524 SIGLEC1Q9BZZ2 1709 aa25.49■■□□□ 1.67
CCDC88B-205ENST00000472524 MLECQ14165 292 aa25.49■■□□□ 1.67
CCDC88B-205ENST00000472524 PLPPR3Q6T4P5 718 aa25.49■■□□□ 1.67
CCDC88B-205ENST00000472524 RIMS1Q86UR5 1692 aaKnown RBP25.48■■□□□ 1.67
CCDC88B-205ENST00000472524 FYCO1Q9BQS8 1478 aa25.47■■□□□ 1.67
CCDC88B-205ENST00000472524 ARHGAP5Q13017 1502 aa25.42■■□□□ 1.66
CCDC88B-205ENST00000472524 CDC42BPBQ9Y5S2 1711 aa25.42■■□□□ 1.66
CCDC88B-205ENST00000472524 HSPA2P54652 639 aa25.41■■□□□ 1.66
CCDC88B-205ENST00000472524 ATP10AO60312 1499 aa25.4■■□□□ 1.66
CCDC88B-205ENST00000472524 AFAP1Q8N556 730 aa25.39■■□□□ 1.66
CCDC88B-205ENST00000472524 C9orf84Q5VXU9 1444 aa25.38■■□□□ 1.65
CCDC88B-205ENST00000472524 PREX2Q70Z35 1606 aa25.38■■□□□ 1.65
CCDC88B-205ENST00000472524 FBXO41Q8TF61 875 aa25.38■■□□□ 1.65
CCDC88B-205ENST00000472524 ZNF518AQ6AHZ1 1483 aa25.36■■□□□ 1.65
CCDC88B-205ENST00000472524 CDC42BPAQ5VT25 1732 aa25.36■■□□□ 1.65
CCDC88B-205ENST00000472524 ARHGEF12Q9NZN5 1544 aa25.33■■□□□ 1.65
CCDC88B-205ENST00000472524 CEP162Q5TB80 1403 aa25.33■■□□□ 1.65
CCDC88B-205ENST00000472524 KDM5CP41229 1560 aa25.31■■□□□ 1.64
CCDC88B-205ENST00000472524 MYT1LQ9UL68 1186 aa25.3■■□□□ 1.64
CCDC88B-205ENST00000472524 FER1L4A9Z1Z3 1794 aa25.28■■□□□ 1.64
CCDC88B-205ENST00000472524 CEBPAP49715 358 aaPredicted RBP25.28■■□□□ 1.64
CCDC88B-205ENST00000472524 ITSN2Q9NZM3 1697 aa25.27■■□□□ 1.64
CCDC88B-205ENST00000472524 TRAPPC8Q9Y2L5 1435 aa25.26■■□□□ 1.63
CCDC88B-205ENST00000472524 ABCC1P33527 1531 aa25.26■■□□□ 1.63
CCDC88B-205ENST00000472524 DIP2CQ9Y2E4 1556 aa25.23■■□□□ 1.63
CCDC88B-205ENST00000472524 MLH3Q9UHC1 1453 aa25.22■■□□□ 1.63
CCDC88B-205ENST00000472524 MTUS2Q5JR59 1369 aa25.2■■□□□ 1.63
CCDC88B-205ENST00000472524 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
CCDC88B-205ENST00000472524 ABCA6Q8N139 1617 aa25.19■■□□□ 1.62
CCDC88B-205ENST00000472524 SAMD9LQ8IVG5 1584 aa25.18■■□□□ 1.62
CCDC88B-205ENST00000472524 GPATCH8Q9UKJ3 1502 aaKnown RBP25.18■■□□□ 1.62
CCDC88B-205ENST00000472524 REREQ9P2R6 1566 aa25.18■■□□□ 1.62
CCDC88B-205ENST00000472524 ZNF777Q9ULD5 760 aaPredicted RBP25.16■■□□□ 1.62
CCDC88B-205ENST00000472524 EHBP1L1Q8N3D4 1523 aa25.16■■□□□ 1.62
CCDC88B-205ENST00000472524 SYCP2Q9BX26 1530 aa25.13■■□□□ 1.61
CCDC88B-205ENST00000472524 CCNB3Q8WWL7 1395 aa25.13■■□□□ 1.61
CCDC88B-205ENST00000472524 AGLP35573 1532 aa25.12■■□□□ 1.61
CCDC88B-205ENST00000472524 KIDINS220Q9ULH0 1771 aa25.12■■□□□ 1.61
CCDC88B-205ENST00000472524 UHRF1BP1Q6BDS2 1440 aa25.11■■□□□ 1.61
CCDC88B-205ENST00000472524 PREX1Q8TCU6 1659 aa25.1■■□□□ 1.61
CCDC88B-205ENST00000472524 TIAM1Q13009 1591 aa25.1■■□□□ 1.61
CCDC88B-205ENST00000472524 CERKQ8TCT0 537 aa25.1■■□□□ 1.61
CCDC88B-205ENST00000472524 CFDP1Q9UEE9 299 aaPredicted RBP25.09■■□□□ 1.61
CCDC88B-205ENST00000472524 HNRNPMP52272 730 aaKnown RBP eCLIP25.08■■□□□ 1.61
CCDC88B-205ENST00000472524 ESF1Q9H501 851 aaKnown RBP25.07■■□□□ 1.6
CCDC88B-205ENST00000472524 SUPT6HQ7KZ85 1726 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-205ENST00000472524 PLEKHH2Q8IVE3 1493 aa25.04■■□□□ 1.6
CCDC88B-205ENST00000472524 SPAG9O60271 1321 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-205ENST00000472524 VPS8Q8N3P4 1428 aa25.03■■□□□ 1.6
CCDC88B-205ENST00000472524 C3P01024 1663 aa25.01■■□□□ 1.59
CCDC88B-205ENST00000472524 KIAA1107Q9UPP5 1409 aa25.01■■□□□ 1.59
CCDC88B-205ENST00000472524 ATP7AQ04656 1500 aa24.99■■□□□ 1.59
CCDC88B-205ENST00000472524 CNTLNQ9NXG0 1405 aa24.99■■□□□ 1.59
CCDC88B-205ENST00000472524 DMRT2Q9Y5R5 561 aa24.99■■□□□ 1.59
CCDC88B-205ENST00000472524 INO80Q9ULG1 1556 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-205ENST00000472524 NCOA2Q15596 1464 aa24.98■■□□□ 1.59
CCDC88B-205ENST00000472524 STRCQ7RTU9 1775 aa24.98■■□□□ 1.59
CCDC88B-205ENST00000472524 ZNF644Q9H582 1327 aaPredicted RBP24.96■■□□□ 1.59
CCDC88B-205ENST00000472524 ZMYM3Q14202 1370 aa24.93■■□□□ 1.58
CCDC88B-205ENST00000472524 A2MP01023 1474 aa24.92■■□□□ 1.58
CCDC88B-205ENST00000472524 LRRC9Q6ZRR7 1453 aa24.91■■□□□ 1.58
CCDC88B-205ENST00000472524 PTPRTO14522 1441 aa24.9■■□□□ 1.58
CCDC88B-205ENST00000472524 SETD1BQ9UPS6 1966 aaKnown RBP24.9■■□□□ 1.58
CCDC88B-205ENST00000472524 ADGBQ8N7X0 1667 aa24.9■■□□□ 1.58
CCDC88B-205ENST00000472524 PLXNC1O60486 1568 aa24.89■■□□□ 1.58
CCDC88B-205ENST00000472524 NPATQ14207 1427 aa24.89■■□□□ 1.58
CCDC88B-205ENST00000472524 CAMSAP2Q08AD1 1489 aa24.89■■□□□ 1.57
CCDC88B-205ENST00000472524 MBD5Q9P267 1494 aa24.89■■□□□ 1.57
CCDC88B-205ENST00000472524 NCOA1Q15788 1441 aa24.87■■□□□ 1.57
CCDC88B-205ENST00000472524 GGT6Q6P531 493 aa24.87■■□□□ 1.57
CCDC88B-205ENST00000472524 MAP3K1Q13233 1512 aa24.86■■□□□ 1.57
CCDC88B-205ENST00000472524 MROH2AA6NES4 1674 aa24.84■■□□□ 1.57
CCDC88B-205ENST00000472524 CCDC141Q6ZP82 1450 aa24.83■■□□□ 1.56
CCDC88B-205ENST00000472524 KANK4Q5T7N3 995 aaPredicted RBP24.82■■□□□ 1.56
CCDC88B-205ENST00000472524 CLTCQ00610 1675 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-205ENST00000472524 PTPRKQ15262 1439 aa24.8■■□□□ 1.56
CCDC88B-205ENST00000472524 CAMSAP1Q5T5Y3 1602 aa24.8■■□□□ 1.56
CCDC88B-205ENST00000472524 NCKAP5LQ9HCH0 1330 aa24.79■■□□□ 1.56
CCDC88B-205ENST00000472524 RTEL1-TNFRSF6BF6WH68 1400 aa24.78■■□□□ 1.56
CCDC88B-205ENST00000472524 ARHGEF5Q12774 1597 aa24.77■■□□□ 1.56
CCDC88B-205ENST00000472524 LTBP4Q8N2S1 1624 aa24.77■■□□□ 1.56
CCDC88B-205ENST00000472524 PPP6R1Q9UPN7 881 aa24.76■■□□□ 1.55
CCDC88B-205ENST00000472524 DHX29Q7Z478 1369 aaKnown RBP24.75■■□□□ 1.55
CCDC88B-205ENST00000472524 APLP2Q06481 763 aa24.73■■□□□ 1.55
CCDC88B-205ENST00000472524 MYO3AQ8NEV4 1616 aa24.72■■□□□ 1.55
CCDC88B-205ENST00000472524 MYOM3Q5VTT5 1437 aa24.72■■□□□ 1.55
CCDC88B-205ENST00000472524 RSPH4AQ5TD94 716 aa24.72■■□□□ 1.55
CCDC88B-205ENST00000472524 CEP170BQ9Y4F5 1589 aaPredicted RBP24.7■■□□□ 1.54
CCDC88B-205ENST00000472524 KIF3BO15066 747 aa24.69■■□□□ 1.54
CCDC88B-205ENST00000472524 ZNF335Q9H4Z2 1342 aaPredicted RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms