RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 CDC42BPAQ5VT25 1732 aa15.37■□□□□ 0.05
SF3A1-207ENST00000471342 PTPRKQ15262 1439 aa15.36■□□□□ 0.05
SF3A1-207ENST00000471342 CD109Q6YHK3 1445 aa15.36■□□□□ 0.05
SF3A1-207ENST00000471342 CDC42BPBQ9Y5S2 1711 aa15.36■□□□□ 0.05
SF3A1-207ENST00000471342 CCNB3Q8WWL7 1395 aa15.36■□□□□ 0.05
SF3A1-207ENST00000471342 PREX2Q70Z35 1606 aa15.35■□□□□ 0.05
SF3A1-207ENST00000471342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.34■□□□□ 0.05
SF3A1-207ENST00000471342 COL17A1Q9UMD9 1497 aaPredicted RBP15.33■□□□□ 0.05
SF3A1-207ENST00000471342 SAMD9LQ8IVG5 1584 aa15.32■□□□□ 0.04
SF3A1-207ENST00000471342 CFDP1Q9UEE9 299 aaPredicted RBP15.3■□□□□ 0.04
SF3A1-207ENST00000471342 FANCAO15360 1455 aa15.29■□□□□ 0.04
SF3A1-207ENST00000471342 ABCC5O15440 1437 aa15.29■□□□□ 0.04
SF3A1-207ENST00000471342 KIAA1107Q9UPP5 1409 aa15.29■□□□□ 0.04
SF3A1-207ENST00000471342 CAMSAP2Q08AD1 1489 aa15.28■□□□□ 0.04
SF3A1-207ENST00000471342 TRAPPC8Q9Y2L5 1435 aa15.28■□□□□ 0.04
SF3A1-207ENST00000471342 PTPN23Q9H3S7 1636 aa15.28■□□□□ 0.04
SF3A1-207ENST00000471342 AKNAQ7Z591 1439 aa15.27■□□□□ 0.04
SF3A1-207ENST00000471342 ABCC1P33527 1531 aa15.27■□□□□ 0.03
SF3A1-207ENST00000471342 MYO5CQ9NQX4 1742 aa15.26■□□□□ 0.03
SF3A1-207ENST00000471342 EFCAB2Q5VUJ9 269 aa15.26■□□□□ 0.03
SF3A1-207ENST00000471342 NEO1Q92859 1461 aa15.26■□□□□ 0.03
SF3A1-207ENST00000471342 HNRNPMP52272 730 aaKnown RBP eCLIP15.25■□□□□ 0.03
SF3A1-207ENST00000471342 ARHGAP5Q13017 1502 aa15.25■□□□□ 0.03
SF3A1-207ENST00000471342 ITSN2Q9NZM3 1697 aa15.23■□□□□ 0.03
SF3A1-207ENST00000471342 SCAPERQ9BY12 1400 aa15.22■□□□□ 0.03
SF3A1-207ENST00000471342 FRMPD1Q5SYB0 1578 aa15.22■□□□□ 0.03
SF3A1-207ENST00000471342 SYCP2Q9BX26 1530 aa15.22■□□□□ 0.03
SF3A1-207ENST00000471342 ARHGEF5Q12774 1597 aa15.21■□□□□ 0.03
SF3A1-207ENST00000471342 DAPK1P53355 1430 aa15.21■□□□□ 0.03
SF3A1-207ENST00000471342 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
SF3A1-207ENST00000471342 AFAP1Q8N556 730 aa15.21■□□□□ 0.03
SF3A1-207ENST00000471342 ZNF777Q9ULD5 760 aaPredicted RBP15.2■□□□□ 0.02
SF3A1-207ENST00000471342 ADGRL1O94910 1474 aa15.19■□□□□ 0.02
SF3A1-207ENST00000471342 DNMT1P26358 1616 aaKnown RBP15.18■□□□□ 0.02
SF3A1-207ENST00000471342 POGZQ7Z3K3 1410 aa15.17■□□□□ 0.02
SF3A1-207ENST00000471342 KDM5CP41229 1560 aa15.17■□□□□ 0.02
SF3A1-207ENST00000471342 PLEKHH2Q8IVE3 1493 aa15.17■□□□□ 0.02
SF3A1-207ENST00000471342 RAPGEF3O95398 923 aa15.17■□□□□ 0.02
SF3A1-207ENST00000471342 FAM50AQ14320 339 aaKnown RBP15.17■□□□□ 0.02
SF3A1-207ENST00000471342 ADGRL2O95490 1459 aa15.15■□□□□ 0.02
SF3A1-207ENST00000471342 CCDC141Q6ZP82 1450 aa15.15■□□□□ 0.02
SF3A1-207ENST00000471342 TEX14Q8IWB6 1497 aa15.15■□□□□ 0.02
SF3A1-207ENST00000471342 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
SF3A1-207ENST00000471342 NCOA1Q15788 1441 aa15.15■□□□□ 0.02
SF3A1-207ENST00000471342 MAST1Q9Y2H9 1570 aa15.14■□□□□ 0.01
SF3A1-207ENST00000471342 RICTORQ6R327 1708 aa15.14■□□□□ 0.01
SF3A1-207ENST00000471342 DENND4BO75064 1496 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-207ENST00000471342 SHANK2Q9UPX8 1470 aa15.14■□□□□ 0.01
SF3A1-207ENST00000471342 TSPOAP1O95153 1857 aa15.13■□□□□ 0.01
SF3A1-207ENST00000471342 RSPH4AQ5TD94 716 aa15.13■□□□□ 0.01
SF3A1-207ENST00000471342 MLH3Q9UHC1 1453 aa15.13■□□□□ 0.01
SF3A1-207ENST00000471342 RTEL1-TNFRSF6BF6WH68 1400 aa15.12■□□□□ 0.01
SF3A1-207ENST00000471342 ROCK1Q13464 1354 aa15.11■□□□□ 0.01
SF3A1-207ENST00000471342 CFAP74Q9C0B2 1584 aa15.11■□□□□ 0.01
SF3A1-207ENST00000471342 NAIPQ13075 1403 aa15.11■□□□□ 0.01
SF3A1-207ENST00000471342 C9orf84Q5VXU9 1444 aa15.11■□□□□ 0.01
SF3A1-207ENST00000471342 ZMYM4Q5VZL5 1548 aa15.11■□□□□ 0.01
SF3A1-207ENST00000471342 YEATS2Q9ULM3 1422 aa15.1■□□□□ 0.01
SF3A1-207ENST00000471342 ZNF518AQ6AHZ1 1483 aa15.1■□□□□ 0.01
SF3A1-207ENST00000471342 ZFYVE16Q7Z3T8 1539 aa15.1■□□□□ 0.01
SF3A1-207ENST00000471342 INO80Q9ULG1 1556 aaPredicted RBP15.1■□□□□ 0.01
SF3A1-207ENST00000471342 CROCC2H7BZ55 1655 aa15.09■□□□□ 0.01
SF3A1-207ENST00000471342 CHIC2Q9UKJ5 165 aa15.09■□□□□ 0.01
SF3A1-207ENST00000471342 HFM1A2PYH4 1435 aa15.09■□□□□ 0.01
SF3A1-207ENST00000471342 KIDINS220Q9ULH0 1771 aa15.08■□□□□ 0.01
SF3A1-207ENST00000471342 KDM6BO15054 1643 aa15.08■□□□□ 0
SF3A1-207ENST00000471342 PCGF6Q9BYE7 350 aa15.08■□□□□ 0
SF3A1-207ENST00000471342 ITGAEP38570 1179 aa15.07■□□□□ 0
SF3A1-207ENST00000471342 SPAG9O60271 1321 aaKnown RBP15.05■□□□□ -0
SF3A1-207ENST00000471342 ATP7AQ04656 1500 aa15.04■□□□□ -0
SF3A1-207ENST00000471342 RRP7BPQ9NSQ0 103 aa15.04■□□□□ -0
SF3A1-207ENST00000471342 SIGLEC1Q9BZZ2 1709 aa15.03■□□□□ -0
SF3A1-207ENST00000471342 PLXNC1O60486 1568 aa15.03■□□□□ -0
SF3A1-207ENST00000471342 ABCA6Q8N139 1617 aa15.03■□□□□ -0
SF3A1-207ENST00000471342 DIP2CQ9Y2E4 1556 aa15.02■□□□□ -0
SF3A1-207ENST00000471342 MAGI2Q86UL8 1455 aa15.02■□□□□ -0
SF3A1-207ENST00000471342 TSPY4P0CV99 314 aa15.02■□□□□ -0
SF3A1-207ENST00000471342 TSPY10P0CW01 314 aa15.02■□□□□ -0
SF3A1-207ENST00000471342 DHX29Q7Z478 1369 aaKnown RBP15.01□□□□□ -0.01
SF3A1-207ENST00000471342 KIF15Q9NS87 1388 aa15.01□□□□□ -0.01
SF3A1-207ENST00000471342 ANKRD30AQ9BXX3 1397 aa15□□□□□ -0.01
SF3A1-207ENST00000471342 HECW2Q9P2P5 1572 aa15□□□□□ -0.01
SF3A1-207ENST00000471342 SETD5Q9C0A6 1442 aa15□□□□□ -0.01
SF3A1-207ENST00000471342 HRCP23327 699 aa14.99□□□□□ -0.01
SF3A1-207ENST00000471342 RAB3GAP2Q9H2M9 1393 aa14.98□□□□□ -0.01
SF3A1-207ENST00000471342 ADGBQ8N7X0 1667 aa14.97□□□□□ -0.01
SF3A1-207ENST00000471342 REREQ9P2R6 1566 aa14.97□□□□□ -0.01
SF3A1-207ENST00000471342 ATP10AO60312 1499 aa14.96□□□□□ -0.01
SF3A1-207ENST00000471342 A2MP01023 1474 aa14.96□□□□□ -0.01
SF3A1-207ENST00000471342 ANKRD50Q9ULJ7 1429 aa14.96□□□□□ -0.01
SF3A1-207ENST00000471342 DUOX2Q9NRD8 1548 aa14.96□□□□□ -0.02
SF3A1-207ENST00000471342 MROH1Q8NDA8 1641 aa14.95□□□□□ -0.02
SF3A1-207ENST00000471342 ARHGEF40Q8TER5 1519 aa14.95□□□□□ -0.02
SF3A1-207ENST00000471342 GCC2Q8IWJ2 1684 aa14.94□□□□□ -0.02
SF3A1-207ENST00000471342 ERBINQ96RT1 1412 aa14.94□□□□□ -0.02
SF3A1-207ENST00000471342 AGLP35573 1532 aa14.93□□□□□ -0.02
SF3A1-207ENST00000471342 VWDEQ8N2E2 1590 aa14.93□□□□□ -0.02
SF3A1-207ENST00000471342 BCORL1Q5H9F3 1711 aa14.92□□□□□ -0.02
SF3A1-207ENST00000471342 PZPP20742 1482 aa14.91□□□□□ -0.02
SF3A1-207ENST00000471342 DEPDC5O75140 1603 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms