RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 WDR7Q9Y4E6 1490 aa14.06□□□□□ -0.16
VPS52-216ENST00000471309 HFM1A2PYH4 1435 aa14.05□□□□□ -0.16
VPS52-216ENST00000471309 SETD5Q9C0A6 1442 aa14.05□□□□□ -0.16
VPS52-216ENST00000471309 RIMBP3CA6NJZ7 1639 aa14.04□□□□□ -0.16
VPS52-216ENST00000471309 RIMBP3BA6NNM3 1639 aa14.04□□□□□ -0.16
VPS52-216ENST00000471309 RIMBP3Q9UFD9 1639 aa14.04□□□□□ -0.16
VPS52-216ENST00000471309 CCER1Q8TC90 406 aaPredicted RBP14.04□□□□□ -0.16
VPS52-216ENST00000471309 DAPK1P53355 1430 aa14.04□□□□□ -0.16
VPS52-216ENST00000471309 CFDP1Q9UEE9 299 aaPredicted RBP14.03□□□□□ -0.16
VPS52-216ENST00000471309 RAB3GAP2Q9H2M9 1393 aa14.03□□□□□ -0.16
VPS52-216ENST00000471309 ADGBQ8N7X0 1667 aa14.03□□□□□ -0.16
VPS52-216ENST00000471309 ARHGEF5Q12774 1597 aa14.02□□□□□ -0.16
VPS52-216ENST00000471309 ARAP3Q8WWN8 1544 aa14.02□□□□□ -0.16
VPS52-216ENST00000471309 SAMD9LQ8IVG5 1584 aa14.01□□□□□ -0.17
VPS52-216ENST00000471309 ABCA9Q8IUA7 1624 aa14.01□□□□□ -0.17
VPS52-216ENST00000471309 SHANK2Q9UPX8 1470 aa14□□□□□ -0.17
VPS52-216ENST00000471309 ABCC5O15440 1437 aa14□□□□□ -0.17
VPS52-216ENST00000471309 NAIPQ13075 1403 aa13.99□□□□□ -0.17
VPS52-216ENST00000471309 ROCK1Q13464 1354 aa13.99□□□□□ -0.17
VPS52-216ENST00000471309 ARHGAP5Q13017 1502 aa13.99□□□□□ -0.17
VPS52-216ENST00000471309 ASXL2Q76L83 1435 aa13.98□□□□□ -0.17
VPS52-216ENST00000471309 DHX57Q6P158 1386 aaKnown RBP13.98□□□□□ -0.17
VPS52-216ENST00000471309 SENP3Q9H4L4 574 aaPredicted RBP13.98□□□□□ -0.17
VPS52-216ENST00000471309 ZNF644Q9H582 1327 aaPredicted RBP13.97□□□□□ -0.17
VPS52-216ENST00000471309 ADGRL2O95490 1459 aa13.97□□□□□ -0.17
VPS52-216ENST00000471309 PLEKHH2Q8IVE3 1493 aa13.97□□□□□ -0.17
VPS52-216ENST00000471309 PLCH2O75038 1416 aa13.97□□□□□ -0.17
VPS52-216ENST00000471309 MAPKBP1O60336 1514 aa13.95□□□□□ -0.18
VPS52-216ENST00000471309 CLSPNQ9HAW4 1339 aa13.95□□□□□ -0.18
VPS52-216ENST00000471309 MBD5Q9P267 1494 aa13.94□□□□□ -0.18
VPS52-216ENST00000471309 ABCC1P33527 1531 aa13.94□□□□□ -0.18
VPS52-216ENST00000471309 SYCP2Q9BX26 1530 aa13.94□□□□□ -0.18
VPS52-216ENST00000471309 CCDC141Q6ZP82 1450 aa13.93□□□□□ -0.18
VPS52-216ENST00000471309 MAST1Q9Y2H9 1570 aa13.93□□□□□ -0.18
VPS52-216ENST00000471309 KIAA1107Q9UPP5 1409 aa13.93□□□□□ -0.18
VPS52-216ENST00000471309 NPM1P06748 294 aaKnown RBP eCLIP13.93□□□□□ -0.18
VPS52-216ENST00000471309 ZNF777Q9ULD5 760 aaPredicted RBP13.92□□□□□ -0.18
VPS52-216ENST00000471309 KCNH8Q96L42 1107 aa13.91□□□□□ -0.18
VPS52-216ENST00000471309 C9orf84Q5VXU9 1444 aa13.9□□□□□ -0.18
VPS52-216ENST00000471309 KDM6BO15054 1643 aa13.9□□□□□ -0.18
VPS52-216ENST00000471309 CFAP74Q9C0B2 1584 aa13.89□□□□□ -0.19
VPS52-216ENST00000471309 NCOA1Q15788 1441 aa13.89□□□□□ -0.19
VPS52-216ENST00000471309 ACIN1Q9UKV3 1341 aaKnown RBP13.89□□□□□ -0.19
VPS52-216ENST00000471309 PLXNC1O60486 1568 aa13.88□□□□□ -0.19
VPS52-216ENST00000471309 ANKRD30AQ9BXX3 1397 aa13.88□□□□□ -0.19
VPS52-216ENST00000471309 RSPH4AQ5TD94 716 aa13.88□□□□□ -0.19
VPS52-216ENST00000471309 CHIC2Q9UKJ5 165 aa13.88□□□□□ -0.19
VPS52-216ENST00000471309 EFCAB2Q5VUJ9 269 aa13.87□□□□□ -0.19
VPS52-216ENST00000471309 FANCAO15360 1455 aa13.87□□□□□ -0.19
VPS52-216ENST00000471309 ARHGEF12Q9NZN5 1544 aa13.86□□□□□ -0.19
VPS52-216ENST00000471309 RRP7BPQ9NSQ0 103 aa13.86□□□□□ -0.19
VPS52-216ENST00000471309 GLI2P10070 1586 aa13.85□□□□□ -0.19
VPS52-216ENST00000471309 MAP3K4Q9Y6R4 1608 aa13.84□□□□□ -0.19
VPS52-216ENST00000471309 CYB5RLQ6IPT4 315 aa13.84□□□□□ -0.19
VPS52-216ENST00000471309 HNRNPMP52272 730 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS52-216ENST00000471309 DIP2BQ9P265 1576 aa13.82□□□□□ -0.2
VPS52-216ENST00000471309 INO80Q9ULG1 1556 aaPredicted RBP13.82□□□□□ -0.2
VPS52-216ENST00000471309 ADGRL1O94910 1474 aa13.81□□□□□ -0.2
VPS52-216ENST00000471309 ZFYVE16Q7Z3T8 1539 aa13.81□□□□□ -0.2
VPS52-216ENST00000471309 TSPY4P0CV99 314 aa13.81□□□□□ -0.2
VPS52-216ENST00000471309 TSPY10P0CW01 314 aa13.81□□□□□ -0.2
VPS52-216ENST00000471309 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
VPS52-216ENST00000471309 KIF15Q9NS87 1388 aa13.8□□□□□ -0.2
VPS52-216ENST00000471309 CD109Q6YHK3 1445 aa13.8□□□□□ -0.2
VPS52-216ENST00000471309 TRAPPC8Q9Y2L5 1435 aa13.8□□□□□ -0.2
VPS52-216ENST00000471309 KDM5DQ9BY66 1539 aa13.8□□□□□ -0.2
VPS52-216ENST00000471309 RTEL1-TNFRSF6BF6WH68 1400 aa13.78□□□□□ -0.2
VPS52-216ENST00000471309 DENND4BO75064 1496 aaPredicted RBP13.78□□□□□ -0.2
VPS52-216ENST00000471309 NEO1Q92859 1461 aa13.78□□□□□ -0.2
VPS52-216ENST00000471309 DUOX2Q9NRD8 1548 aa13.78□□□□□ -0.2
VPS52-216ENST00000471309 UNC13BO14795 1591 aa13.77□□□□□ -0.21
VPS52-216ENST00000471309 ATP7AQ04656 1500 aa13.76□□□□□ -0.21
VPS52-216ENST00000471309 TRHP20396 242 aaPredicted RBP13.76□□□□□ -0.21
VPS52-216ENST00000471309 KDM5CP41229 1560 aa13.75□□□□□ -0.21
VPS52-216ENST00000471309 PZPP20742 1482 aa13.75□□□□□ -0.21
VPS52-216ENST00000471309 ERBINQ96RT1 1412 aa13.75□□□□□ -0.21
VPS52-216ENST00000471309 SCAPERQ9BY12 1400 aa13.75□□□□□ -0.21
VPS52-216ENST00000471309 ZNF518AQ6AHZ1 1483 aa13.74□□□□□ -0.21
VPS52-216ENST00000471309 POGZQ7Z3K3 1410 aa13.73□□□□□ -0.21
VPS52-216ENST00000471309 MAGI2Q86UL8 1455 aa13.73□□□□□ -0.21
VPS52-216ENST00000471309 TRIM52Q96A61 297 aa13.72□□□□□ -0.21
VPS52-216ENST00000471309 EIF2AK4Q9P2K8 1649 aaKnown RBP13.72□□□□□ -0.21
VPS52-216ENST00000471309 HECW2Q9P2P5 1572 aa13.71□□□□□ -0.21
VPS52-216ENST00000471309 PPRC1Q5VV67 1664 aaKnown RBP13.71□□□□□ -0.21
VPS52-216ENST00000471309 KIF13AQ9H1H9 1805 aa13.71□□□□□ -0.22
VPS52-216ENST00000471309 KIDINS220Q9ULH0 1771 aa13.71□□□□□ -0.22
VPS52-216ENST00000471309 SPAG9O60271 1321 aaKnown RBP13.7□□□□□ -0.22
VPS52-216ENST00000471309 MPHOSPH9Q99550 1183 aa13.7□□□□□ -0.22
VPS52-216ENST00000471309 IQGAP3Q86VI3 1631 aa13.7□□□□□ -0.22
VPS52-216ENST00000471309 RICTORQ6R327 1708 aa13.7□□□□□ -0.22
VPS52-216ENST00000471309 DEPDC5O75140 1603 aa13.69□□□□□ -0.22
VPS52-216ENST00000471309 MLH3Q9UHC1 1453 aa13.68□□□□□ -0.22
VPS52-216ENST00000471309 PLPPR3Q6T4P5 718 aa13.68□□□□□ -0.22
VPS52-216ENST00000471309 AFAP1Q8N556 730 aa13.68□□□□□ -0.22
VPS52-216ENST00000471309 TIMELESSQ9UNS1 1208 aa13.68□□□□□ -0.22
VPS52-216ENST00000471309 FAM135AQ9P2D6 1515 aa13.68□□□□□ -0.22
VPS52-216ENST00000471309 TEX14Q8IWB6 1497 aa13.67□□□□□ -0.22
VPS52-216ENST00000471309 FRMPD1Q5SYB0 1578 aa13.66□□□□□ -0.22
VPS52-216ENST00000471309 BCORL1Q5H9F3 1711 aa13.65□□□□□ -0.22
VPS52-216ENST00000471309 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms