RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 TRIM26Q12899 539 aaPredicted RBP7.53□□□□□ -1.2
COL3A1-205ENST00000470167 RSPH4AQ5TD94 716 aa7.53□□□□□ -1.2
COL3A1-205ENST00000470167 MS4A3Q96HJ5 214 aa7.53□□□□□ -1.2
COL3A1-205ENST00000470167 TMEM106CQ9BVX2 250 aa7.52□□□□□ -1.21
COL3A1-205ENST00000470167 MS4A4AQ96JQ5 239 aa7.51□□□□□ -1.21
COL3A1-205ENST00000470167 C19orf67A6NJJ6 358 aa7.5□□□□□ -1.21
COL3A1-205ENST00000470167 GOLGA2Q08379 1002 aa7.5□□□□□ -1.21
COL3A1-205ENST00000470167 HSP90B1P14625 803 aaKnown RBP7.49□□□□□ -1.21
COL3A1-205ENST00000470167 ZNF326Q5BKZ1 582 aaKnown RBP7.49□□□□□ -1.21
COL3A1-205ENST00000470167 RSPH6AQ9H0K4 717 aa7.49□□□□□ -1.21
COL3A1-205ENST00000470167 MYT1LQ9UL68 1186 aa7.49□□□□□ -1.21
COL3A1-205ENST00000470167 CDK11BP21127 795 aaKnown RBP7.48□□□□□ -1.21
COL3A1-205ENST00000470167 AAMPQ13685 434 aa7.48□□□□□ -1.21
COL3A1-205ENST00000470167 DHX37Q8IY37 1157 aaKnown RBP7.46□□□□□ -1.22
COL3A1-205ENST00000470167 NCKAP5LQ9HCH0 1330 aa7.46□□□□□ -1.22
COL3A1-205ENST00000470167 MKRN3Q13064 507 aaKnown RBP7.45□□□□□ -1.22
COL3A1-205ENST00000470167 TTLL13PA6NNM8 815 aa7.44□□□□□ -1.22
COL3A1-205ENST00000470167 HMGB1P09429 215 aaKnown RBP7.44□□□□□ -1.22
COL3A1-205ENST00000470167 E2F4Q16254 413 aa7.44□□□□□ -1.22
COL3A1-205ENST00000470167 BCCIPQ9P287 314 aaKnown RBP eCLIP7.44□□□□□ -1.22
COL3A1-205ENST00000470167 CLSPNQ9HAW4 1339 aa7.44□□□□□ -1.22
COL3A1-205ENST00000470167 TIE1P35590 1138 aa7.43□□□□□ -1.22
COL3A1-205ENST00000470167 GALR2O43603 387 aaPredicted RBP7.42□□□□□ -1.22
COL3A1-205ENST00000470167 LARP6Q9BRS8 491 aaKnown RBP7.42□□□□□ -1.22
COL3A1-205ENST00000470167 BMP2KQ9NSY1 1161 aaPredicted RBP7.42□□□□□ -1.22
COL3A1-205ENST00000470167 SALL2Q9Y467 1007 aaPredicted RBP7.42□□□□□ -1.22
COL3A1-205ENST00000470167 SHROOM4Q9ULL8 1493 aa7.42□□□□□ -1.22
COL3A1-205ENST00000470167 LMOD2Q6P5Q4 547 aa7.41□□□□□ -1.22
COL3A1-205ENST00000470167 ARHGEF1Q92888 912 aaKnown RBP7.41□□□□□ -1.22
COL3A1-205ENST00000470167 CRISPLD2Q9H0B8 497 aa7.41□□□□□ -1.22
COL3A1-205ENST00000470167 GABBR2O75899 941 aa7.39□□□□□ -1.23
COL3A1-205ENST00000470167 PDE4AP27815 886 aa7.39□□□□□ -1.23
COL3A1-205ENST00000470167 MFSD10Q14728 455 aa7.39□□□□□ -1.23
COL3A1-205ENST00000470167 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.39□□□□□ -1.23
COL3A1-205ENST00000470167 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.39□□□□□ -1.23
COL3A1-205ENST00000470167 TRIM35Q9UPQ4 493 aa7.39□□□□□ -1.23
COL3A1-205ENST00000470167 DDX27Q96GQ7 796 aaKnown RBP7.38□□□□□ -1.23
COL3A1-205ENST00000470167 SEMA3EO15041 775 aa7.37□□□□□ -1.23
COL3A1-205ENST00000470167 ILDR1Q86SU0 546 aaPredicted RBP7.37□□□□□ -1.23
COL3A1-205ENST00000470167 PPARGC1BQ86YN6 1023 aaKnown RBP7.37□□□□□ -1.23
COL3A1-205ENST00000470167 ZEB1P37275 1124 aaPredicted RBP7.36□□□□□ -1.23
COL3A1-205ENST00000470167 NEUROD1Q13562 356 aa7.36□□□□□ -1.23
COL3A1-205ENST00000470167 PLSCR2Q9NRY7 297 aa7.36□□□□□ -1.23
COL3A1-205ENST00000470167 TESPA1A2RU30 521 aaPredicted RBP7.35□□□□□ -1.23
COL3A1-205ENST00000470167 DPY19L2Q6NUT2 758 aa7.35□□□□□ -1.23
COL3A1-205ENST00000470167 RBM10P98175 930 aaKnown RBP7.34□□□□□ -1.23
COL3A1-205ENST00000470167 GLIPR1L2Q4G1C9 344 aa7.34□□□□□ -1.23
COL3A1-205ENST00000470167 UBTFP17480 764 aaKnown RBP7.33□□□□□ -1.24
COL3A1-205ENST00000470167 ATN1P54259 1190 aaPredicted RBP7.33□□□□□ -1.24
COL3A1-205ENST00000470167 CAMK2BQ13554 666 aa7.32□□□□□ -1.24
COL3A1-205ENST00000470167 PPP1R15BQ5SWA1 713 aa7.32□□□□□ -1.24
COL3A1-205ENST00000470167 MICALL2Q8IY33 904 aa7.31□□□□□ -1.24
COL3A1-205ENST00000470167 PDCD7Q8N8D1 485 aaKnown RBP7.31□□□□□ -1.24
COL3A1-205ENST00000470167 NAP1L5Q96NT1 182 aaPredicted RBP7.31□□□□□ -1.24
COL3A1-205ENST00000470167 PUS7Q96PZ0 661 aaKnown RBP7.31□□□□□ -1.24
COL3A1-205ENST00000470167 SUPT5HO00267 1087 aaKnown RBP7.3□□□□□ -1.24
COL3A1-205ENST00000470167 ATMINO43313 823 aaPredicted RBP7.3□□□□□ -1.24
COL3A1-205ENST00000470167 ZC3H15Q8WU90 426 aaKnown RBP7.3□□□□□ -1.24
COL3A1-205ENST00000470167 GPHNQ9NQX3 736 aaPredicted RBP7.3□□□□□ -1.24
COL3A1-205ENST00000470167 ARIH1Q9Y4X5 557 aaPredicted RBP7.3□□□□□ -1.24
COL3A1-205ENST00000470167 CCDC136Q96JN2 1154 aa7.29□□□□□ -1.24
COL3A1-205ENST00000470167 IGSF3O75054 1194 aa7.28□□□□□ -1.24
COL3A1-205ENST00000470167 IRX5P78411 483 aaPredicted RBP7.28□□□□□ -1.24
COL3A1-205ENST00000470167 DSG2Q14126 1118 aa7.28□□□□□ -1.24
COL3A1-205ENST00000470167 A0A0U1RQG5 324 aaPredicted RBP7.27□□□□□ -1.25
COL3A1-205ENST00000470167 CLCN6P51797 869 aa7.27□□□□□ -1.25
COL3A1-205ENST00000470167 LHX8Q68G74 356 aa7.27□□□□□ -1.25
COL3A1-205ENST00000470167 ASTLQ6HA08 431 aaPredicted RBP7.27□□□□□ -1.25
COL3A1-205ENST00000470167 ZMYND15Q9H091 742 aa7.27□□□□□ -1.25
COL3A1-205ENST00000470167 TMC2Q8TDI7 906 aa7.26□□□□□ -1.25
COL3A1-205ENST00000470167 ARID3AQ99856 593 aa7.26□□□□□ -1.25
COL3A1-205ENST00000470167 EMILIN3Q9NT22 766 aa7.26□□□□□ -1.25
COL3A1-205ENST00000470167 DPYSL4O14531 572 aa7.25□□□□□ -1.25
COL3A1-205ENST00000470167 MLLT3P42568 568 aaPredicted RBP7.25□□□□□ -1.25
COL3A1-205ENST00000470167 IER5LQ5T953 404 aa7.25□□□□□ -1.25
COL3A1-205ENST00000470167 SMYD5Q6GMV2 418 aa7.25□□□□□ -1.25
COL3A1-205ENST00000470167 OCEL1Q9H607 264 aa7.25□□□□□ -1.25
COL3A1-205ENST00000470167 BOLA1Q9Y3E2 137 aa7.25□□□□□ -1.25
COL3A1-205ENST00000470167 C2orf72A6NCS6 295 aa7.23□□□□□ -1.25
COL3A1-205ENST00000470167 PLCG2P16885 1265 aa7.23□□□□□ -1.25
COL3A1-205ENST00000470167 DEKP35659 375 aaKnown RBP7.23□□□□□ -1.25
COL3A1-205ENST00000470167 FOXK1P85037 733 aa7.23□□□□□ -1.25
COL3A1-205ENST00000470167 TICAM2Q86XR7 235 aa7.23□□□□□ -1.25
COL3A1-205ENST00000470167 TMEM121BQ9BXQ6 578 aaPredicted RBP7.23□□□□□ -1.25
COL3A1-205ENST00000470167 SLC24A3Q9HC58 644 aa7.23□□□□□ -1.25
COL3A1-205ENST00000470167 CCDC9Q9Y3X0 531 aaKnown RBP7.23□□□□□ -1.25
COL3A1-205ENST00000470167 G3V3G9 751 aa7.22□□□□□ -1.25
COL3A1-205ENST00000470167 RBM26Q5T8P6 1007 aaKnown RBP7.22□□□□□ -1.25
COL3A1-205ENST00000470167 KIF3CO14782 793 aa7.21□□□□□ -1.26
COL3A1-205ENST00000470167 PLPP6Q8IY26 295 aa7.21□□□□□ -1.26
COL3A1-205ENST00000470167 ZMYND10O75800 440 aa7.2□□□□□ -1.26
COL3A1-205ENST00000470167 POTEIP0CG38 1075 aa7.2□□□□□ -1.26
COL3A1-205ENST00000470167 BRPF1P55201 1214 aaPredicted RBP7.2□□□□□ -1.26
COL3A1-205ENST00000470167 PDIA6Q15084 440 aa7.2□□□□□ -1.26
COL3A1-205ENST00000470167 DCBLD2Q96PD2 775 aa7.2□□□□□ -1.26
COL3A1-205ENST00000470167 GPIHBP1Q8IV16 184 aa7.19□□□□□ -1.26
COL3A1-205ENST00000470167 TEX2Q8IWB9 1127 aa7.19□□□□□ -1.26
COL3A1-205ENST00000470167 COLQQ9Y215 455 aaPredicted RBP7.19□□□□□ -1.26
COL3A1-205ENST00000470167 SPDYE16A6NNV3 312 aaPredicted RBP7.18□□□□□ -1.26
COL3A1-205ENST00000470167 TMEM92Q6UXU6 159 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms