RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 CASKIN1Q8WXD9 1431 aa17.89■□□□□ 0.46
COL4A3-204ENST00000469504 ARID4BQ4LE39 1312 aaPredicted RBP17.89■□□□□ 0.45
COL4A3-204ENST00000469504 POGZQ7Z3K3 1410 aa17.89■□□□□ 0.45
COL4A3-204ENST00000469504 PTPRMP28827 1452 aa17.88■□□□□ 0.45
COL4A3-204ENST00000469504 SCAPERQ9BY12 1400 aa17.88■□□□□ 0.45
COL4A3-204ENST00000469504 BCORL1Q5H9F3 1711 aa17.87■□□□□ 0.45
COL4A3-204ENST00000469504 ZFYVE16Q7Z3T8 1539 aa17.87■□□□□ 0.45
COL4A3-204ENST00000469504 MYO5CQ9NQX4 1742 aa17.86■□□□□ 0.45
COL4A3-204ENST00000469504 FYCO1Q9BQS8 1478 aa17.83■□□□□ 0.45
COL4A3-204ENST00000469504 ZNF518AQ6AHZ1 1483 aa17.82■□□□□ 0.44
COL4A3-204ENST00000469504 YEATS2Q9ULM3 1422 aa17.81■□□□□ 0.44
COL4A3-204ENST00000469504 MSH5O43196 834 aa17.81■□□□□ 0.44
COL4A3-204ENST00000469504 PCF11O94913 1555 aaKnown RBP17.81■□□□□ 0.44
COL4A3-204ENST00000469504 ARHGAP5Q13017 1502 aa17.81■□□□□ 0.44
COL4A3-204ENST00000469504 MADDQ8WXG6 1647 aa17.8■□□□□ 0.44
COL4A3-204ENST00000469504 ATP10AO60312 1499 aa17.78■□□□□ 0.44
COL4A3-204ENST00000469504 C9orf84Q5VXU9 1444 aa17.78■□□□□ 0.44
COL4A3-204ENST00000469504 LRRIQ1Q96JM4 1722 aa17.78■□□□□ 0.44
COL4A3-204ENST00000469504 KDM5CP41229 1560 aa17.77■□□□□ 0.44
COL4A3-204ENST00000469504 PIAS4Q8N2W9 510 aaPredicted RBP17.75■□□□□ 0.43
COL4A3-204ENST00000469504 PREX2Q70Z35 1606 aa17.74■□□□□ 0.43
COL4A3-204ENST00000469504 RIMS1Q86UR5 1692 aaKnown RBP17.72■□□□□ 0.43
COL4A3-204ENST00000469504 MLH3Q9UHC1 1453 aa17.72■□□□□ 0.43
COL4A3-204ENST00000469504 REREQ9P2R6 1566 aa17.71■□□□□ 0.43
COL4A3-204ENST00000469504 AFAP1Q8N556 730 aa17.71■□□□□ 0.43
COL4A3-204ENST00000469504 CDC42BPBQ9Y5S2 1711 aa17.71■□□□□ 0.43
COL4A3-204ENST00000469504 ABCC1P33527 1531 aa17.71■□□□□ 0.43
COL4A3-204ENST00000469504 ARHGEF12Q9NZN5 1544 aa17.7■□□□□ 0.42
COL4A3-204ENST00000469504 LMTK3Q96Q04 1460 aa17.69■□□□□ 0.42
COL4A3-204ENST00000469504 SIGLEC1Q9BZZ2 1709 aa17.68■□□□□ 0.42
COL4A3-204ENST00000469504 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
COL4A3-204ENST00000469504 MLECQ14165 292 aa17.66■□□□□ 0.42
COL4A3-204ENST00000469504 ILDR1Q86SU0 546 aaPredicted RBP17.66■□□□□ 0.42
COL4A3-204ENST00000469504 FER1L4A9Z1Z3 1794 aa17.66■□□□□ 0.42
COL4A3-204ENST00000469504 DIP2CQ9Y2E4 1556 aa17.66■□□□□ 0.42
COL4A3-204ENST00000469504 TRAPPC8Q9Y2L5 1435 aa17.64■□□□□ 0.42
COL4A3-204ENST00000469504 PLEKHH2Q8IVE3 1493 aa17.64■□□□□ 0.41
COL4A3-204ENST00000469504 AGLP35573 1532 aa17.64■□□□□ 0.41
COL4A3-204ENST00000469504 GPATCH8Q9UKJ3 1502 aaKnown RBP17.64■□□□□ 0.41
COL4A3-204ENST00000469504 ITSN2Q9NZM3 1697 aa17.64■□□□□ 0.41
COL4A3-204ENST00000469504 CDC42BPAQ5VT25 1732 aa17.64■□□□□ 0.41
COL4A3-204ENST00000469504 KIAA1107Q9UPP5 1409 aa17.64■□□□□ 0.41
COL4A3-204ENST00000469504 MTUS2Q5JR59 1369 aa17.63■□□□□ 0.41
COL4A3-204ENST00000469504 CCNB3Q8WWL7 1395 aa17.61■□□□□ 0.41
COL4A3-204ENST00000469504 CEP162Q5TB80 1403 aa17.61■□□□□ 0.41
COL4A3-204ENST00000469504 CFDP1Q9UEE9 299 aaPredicted RBP17.6■□□□□ 0.41
COL4A3-204ENST00000469504 ABCA6Q8N139 1617 aa17.6■□□□□ 0.41
COL4A3-204ENST00000469504 ADRA2BP18089 450 aa17.59■□□□□ 0.41
COL4A3-204ENST00000469504 SAMD9LQ8IVG5 1584 aa17.58■□□□□ 0.41
COL4A3-204ENST00000469504 EHBP1L1Q8N3D4 1523 aa17.58■□□□□ 0.41
COL4A3-204ENST00000469504 ZNF777Q9ULD5 760 aaPredicted RBP17.58■□□□□ 0.4
COL4A3-204ENST00000469504 PPP6R1Q9UPN7 881 aa17.58■□□□□ 0.4
COL4A3-204ENST00000469504 ESF1Q9H501 851 aaKnown RBP17.57■□□□□ 0.4
COL4A3-204ENST00000469504 SYCP2Q9BX26 1530 aa17.57■□□□□ 0.4
COL4A3-204ENST00000469504 CNTLNQ9NXG0 1405 aa17.56■□□□□ 0.4
COL4A3-204ENST00000469504 KIDINS220Q9ULH0 1771 aa17.56■□□□□ 0.4
COL4A3-204ENST00000469504 SPAG9O60271 1321 aaKnown RBP17.56■□□□□ 0.4
COL4A3-204ENST00000469504 PREX1Q8TCU6 1659 aa17.54■□□□□ 0.4
COL4A3-204ENST00000469504 FBXO41Q8TF61 875 aa17.53■□□□□ 0.4
COL4A3-204ENST00000469504 UHRF1BP1Q6BDS2 1440 aa17.53■□□□□ 0.4
COL4A3-204ENST00000469504 HNRNPMP52272 730 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL4A3-204ENST00000469504 HSPA2P54652 639 aa17.52■□□□□ 0.4
COL4A3-204ENST00000469504 ATP7AQ04656 1500 aa17.52■□□□□ 0.39
COL4A3-204ENST00000469504 TIAM1Q13009 1591 aa17.5■□□□□ 0.39
COL4A3-204ENST00000469504 SETD1BQ9UPS6 1966 aaKnown RBP17.5■□□□□ 0.39
COL4A3-204ENST00000469504 CEBPAP49715 358 aaPredicted RBP17.5■□□□□ 0.39
COL4A3-204ENST00000469504 INO80Q9ULG1 1556 aaPredicted RBP17.49■□□□□ 0.39
COL4A3-204ENST00000469504 DMRT2Q9Y5R5 561 aa17.49■□□□□ 0.39
COL4A3-204ENST00000469504 RTEL1-TNFRSF6BF6WH68 1400 aa17.48■□□□□ 0.39
COL4A3-204ENST00000469504 RSPH4AQ5TD94 716 aa17.48■□□□□ 0.39
COL4A3-204ENST00000469504 A2MP01023 1474 aa17.48■□□□□ 0.39
COL4A3-204ENST00000469504 PLXNC1O60486 1568 aa17.48■□□□□ 0.39
COL4A3-204ENST00000469504 MBD5Q9P267 1494 aa17.46■□□□□ 0.39
COL4A3-204ENST00000469504 NPATQ14207 1427 aa17.46■□□□□ 0.39
COL4A3-204ENST00000469504 VPS8Q8N3P4 1428 aa17.46■□□□□ 0.39
COL4A3-204ENST00000469504 C3P01024 1663 aa17.45■□□□□ 0.38
COL4A3-204ENST00000469504 MROH2AA6NES4 1674 aa17.45■□□□□ 0.38
COL4A3-204ENST00000469504 SUPT6HQ7KZ85 1726 aaKnown RBP17.44■□□□□ 0.38
COL4A3-204ENST00000469504 NCOA2Q15596 1464 aa17.44■□□□□ 0.38
COL4A3-204ENST00000469504 ADGBQ8N7X0 1667 aa17.42■□□□□ 0.38
COL4A3-204ENST00000469504 MAP3K1Q13233 1512 aa17.42■□□□□ 0.38
COL4A3-204ENST00000469504 ZMYM3Q14202 1370 aa17.41■□□□□ 0.38
COL4A3-204ENST00000469504 CCDC141Q6ZP82 1450 aa17.41■□□□□ 0.38
COL4A3-204ENST00000469504 ZNF644Q9H582 1327 aaPredicted RBP17.41■□□□□ 0.38
COL4A3-204ENST00000469504 DHX29Q7Z478 1369 aaKnown RBP17.4■□□□□ 0.38
COL4A3-204ENST00000469504 CAMSAP2Q08AD1 1489 aa17.38■□□□□ 0.37
COL4A3-204ENST00000469504 LRRC9Q6ZRR7 1453 aa17.38■□□□□ 0.37
COL4A3-204ENST00000469504 PTPRTO14522 1441 aa17.38■□□□□ 0.37
COL4A3-204ENST00000469504 FAM135AQ9P2D6 1515 aa17.37■□□□□ 0.37
COL4A3-204ENST00000469504 GGT6Q6P531 493 aa17.36■□□□□ 0.37
COL4A3-204ENST00000469504 CERKQ8TCT0 537 aa17.36■□□□□ 0.37
COL4A3-204ENST00000469504 ARHGEF5Q12774 1597 aa17.36■□□□□ 0.37
COL4A3-204ENST00000469504 LOC105371045A0A1W2PR82 267 aa17.35■□□□□ 0.37
COL4A3-204ENST00000469504 TSPY4P0CV99 314 aa17.34■□□□□ 0.37
COL4A3-204ENST00000469504 TSPY10P0CW01 314 aa17.34■□□□□ 0.37
COL4A3-204ENST00000469504 NCOA1Q15788 1441 aa17.34■□□□□ 0.37
COL4A3-204ENST00000469504 STRCQ7RTU9 1775 aa17.34■□□□□ 0.37
COL4A3-204ENST00000469504 MIA2Q96PC5 1412 aa17.33■□□□□ 0.36
COL4A3-204ENST00000469504 CLTCQ00610 1675 aaKnown RBP17.32■□□□□ 0.36
COL4A3-204ENST00000469504 PTPRKQ15262 1439 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms