RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM205CA6NFA0 338 aa12.45□□□□□ -0.42
CCDC88A-210ENST00000468534 PPP1R37O75864 691 aa12.43□□□□□ -0.42
CCDC88A-210ENST00000468534 RIMBP2O15034 1052 aa12.42□□□□□ -0.42
CCDC88A-210ENST00000468534 HS3ST6Q96QI5 342 aa12.42□□□□□ -0.42
CCDC88A-210ENST00000468534 POTEB3A0JP26 581 aa12.39□□□□□ -0.43
CCDC88A-210ENST00000468534 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-210ENST00000468534 POTEBQ6S5H4 581 aa12.39□□□□□ -0.43
CCDC88A-210ENST00000468534 C2orf72A6NCS6 295 aa12.38□□□□□ -0.43
CCDC88A-210ENST00000468534 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
CCDC88A-210ENST00000468534 ERBB3P21860 1342 aa12.35□□□□□ -0.43
CCDC88A-210ENST00000468534 TMC2Q8TDI7 906 aa12.34□□□□□ -0.43
CCDC88A-210ENST00000468534 KIF3CO14782 793 aa12.33□□□□□ -0.44
CCDC88A-210ENST00000468534 NKX1-1Q15270 411 aaPredicted RBP12.32□□□□□ -0.44
CCDC88A-210ENST00000468534 ZSWIM6Q9HCJ5 1215 aa12.32□□□□□ -0.44
CCDC88A-210ENST00000468534 ARSIQ5FYB1 569 aa12.31□□□□□ -0.44
CCDC88A-210ENST00000468534 GPR153Q6NV75 609 aa12.3□□□□□ -0.44
CCDC88A-210ENST00000468534 VARS2Q5ST30 1063 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-210ENST00000468534 KHSRPQ92945 711 aaKnown RBP eCLIP12.29□□□□□ -0.44
CCDC88A-210ENST00000468534 KRTAP3-3Q9BYR6 98 aa12.26□□□□□ -0.45
CCDC88A-210ENST00000468534 KRTAP3-2Q9BYR7 98 aa12.26□□□□□ -0.45
CCDC88A-210ENST00000468534 SPNS2Q8IVW8 549 aa12.24□□□□□ -0.45
CCDC88A-210ENST00000468534 DNAJC5Q9H3Z4 198 aa12.24□□□□□ -0.45
CCDC88A-210ENST00000468534 RYDENQ9NUL5 291 aaKnown RBP12.21□□□□□ -0.45
CCDC88A-210ENST00000468534 NUDT7P0C024 238 aa12.19□□□□□ -0.46
CCDC88A-210ENST00000468534 PCDHGA4Q9Y5G9 962 aa12.18□□□□□ -0.46
CCDC88A-210ENST00000468534 MMRN1Q13201 1228 aa12.17□□□□□ -0.46
CCDC88A-210ENST00000468534 ZNF316A6NFI3 1004 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-210ENST00000468534 PLPP6Q8IY26 295 aa12.16□□□□□ -0.46
CCDC88A-210ENST00000468534 GPHNQ9NQX3 736 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-210ENST00000468534 DSG2Q14126 1118 aa12.15□□□□□ -0.46
CCDC88A-210ENST00000468534 GTPBP6O43824 516 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-210ENST00000468534 SLC34A2O95436 690 aa12.14□□□□□ -0.47
CCDC88A-210ENST00000468534 FOXK1P85037 733 aa12.14□□□□□ -0.47
CCDC88A-210ENST00000468534 ZNF687Q8N1G0 1237 aa12.13□□□□□ -0.47
CCDC88A-210ENST00000468534 LHX6Q9UPM6 363 aa12.11□□□□□ -0.47
CCDC88A-210ENST00000468534 PTCD2Q8WV60 388 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-210ENST00000468534 CRISPLD2Q9H0B8 497 aa12.05□□□□□ -0.48
CCDC88A-210ENST00000468534 UPF1Q92900 1129 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC88A-210ENST00000468534 NCKAP5LQ9HCH0 1330 aa12.04□□□□□ -0.48
CCDC88A-210ENST00000468534 PPP1R15BQ5SWA1 713 aa12.03□□□□□ -0.48
CCDC88A-210ENST00000468534 PDE4AP27815 886 aa12.02□□□□□ -0.49
CCDC88A-210ENST00000468534 AMER1Q5JTC6 1135 aaPredicted RBP12.02□□□□□ -0.49
CCDC88A-210ENST00000468534 ANKRD13DQ6ZTN6 518 aa12.02□□□□□ -0.49
CCDC88A-210ENST00000468534 TBC1D12O60347 775 aa12.01□□□□□ -0.49
CCDC88A-210ENST00000468534 RTN4Q9NQC3 1192 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-210ENST00000468534 LARP6Q9BRS8 491 aaKnown RBP12□□□□□ -0.49
CCDC88A-210ENST00000468534 AXIN2Q9Y2T1 843 aa12□□□□□ -0.49
CCDC88A-210ENST00000468534 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
CCDC88A-210ENST00000468534 LSM11P83369 360 aaKnown RBP eCLIP11.96□□□□□ -0.49
CCDC88A-210ENST00000468534 POTEEQ6S8J3 1075 aa11.96□□□□□ -0.49
CCDC88A-210ENST00000468534 OXER1Q8TDS5 423 aa11.95□□□□□ -0.5
CCDC88A-210ENST00000468534 DDX27Q96GQ7 796 aaKnown RBP11.95□□□□□ -0.5
CCDC88A-210ENST00000468534 PSDA5PKW4 1024 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-210ENST00000468534 CADPS2Q86UW7 1296 aa11.94□□□□□ -0.5
CCDC88A-210ENST00000468534 BBXQ8WY36 941 aaPredicted RBP11.94□□□□□ -0.5
CCDC88A-210ENST00000468534 MYT1LQ9UL68 1186 aa11.94□□□□□ -0.5
CCDC88A-210ENST00000468534 PBX2P40425 430 aa11.93□□□□□ -0.5
CCDC88A-210ENST00000468534 RNF166Q96A37 237 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-210ENST00000468534 PPP4R3BQ5MIZ7 849 aa11.91□□□□□ -0.5
CCDC88A-210ENST00000468534 ARHGAP33O14559 1287 aa11.88□□□□□ -0.51
CCDC88A-210ENST00000468534 PSEN2P49810 448 aa11.88□□□□□ -0.51
CCDC88A-210ENST00000468534 MFSD10Q14728 455 aa11.88□□□□□ -0.51
CCDC88A-210ENST00000468534 ZNF454Q8N9F8 522 aa11.86□□□□□ -0.51
CCDC88A-210ENST00000468534 PTGER2P43116 358 aa11.85□□□□□ -0.51
CCDC88A-210ENST00000468534 EVI5O60447 810 aa11.84□□□□□ -0.51
CCDC88A-210ENST00000468534 MAP3K9P80192 1104 aa11.84□□□□□ -0.51
CCDC88A-210ENST00000468534 DMRTA1Q5VZB9 504 aa11.84□□□□□ -0.51
CCDC88A-210ENST00000468534 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-210ENST00000468534 SPRYD3Q8NCJ5 442 aa11.83□□□□□ -0.52
CCDC88A-210ENST00000468534 KCNK17Q96T54 332 aa11.83□□□□□ -0.52
CCDC88A-210ENST00000468534 EMILIN3Q9NT22 766 aa11.83□□□□□ -0.52
CCDC88A-210ENST00000468534 ADGRD1Q6QNK2 874 aa11.82□□□□□ -0.52
CCDC88A-210ENST00000468534 CFAP44Q96MT7 982 aa11.81□□□□□ -0.52
CCDC88A-210ENST00000468534 KCNH8Q96L42 1107 aa11.8□□□□□ -0.52
CCDC88A-210ENST00000468534 PAXIP1Q6ZW49 1069 aaPredicted RBP11.78□□□□□ -0.52
CCDC88A-210ENST00000468534 FOSBP53539 338 aa11.77□□□□□ -0.53
CCDC88A-210ENST00000468534 ANO8Q9HCE9 1232 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-210ENST00000468534 JPH4Q96JJ6 628 aa11.75□□□□□ -0.53
CCDC88A-210ENST00000468534 TK2O00142 265 aa11.73□□□□□ -0.53
CCDC88A-210ENST00000468534 BCL2L12Q9HB09 334 aa11.73□□□□□ -0.53
CCDC88A-210ENST00000468534 DPYSL4O14531 572 aa11.72□□□□□ -0.53
CCDC88A-210ENST00000468534 ZDHHC16Q969W1 377 aa11.72□□□□□ -0.53
CCDC88A-210ENST00000468534 PTPREP23469 700 aa11.71□□□□□ -0.53
CCDC88A-210ENST00000468534 STAC3Q96MF2 364 aa11.71□□□□□ -0.53
CCDC88A-210ENST00000468534 ADAM33Q9BZ11 813 aa11.71□□□□□ -0.53
CCDC88A-210ENST00000468534 HRO43593 1189 aa11.7□□□□□ -0.54
CCDC88A-210ENST00000468534 CAMK2BQ13554 666 aa11.7□□□□□ -0.54
CCDC88A-210ENST00000468534 PCDHGA10Q9Y5H3 936 aa11.68□□□□□ -0.54
CCDC88A-210ENST00000468534 VPS9D1Q9Y2B5 631 aa11.67□□□□□ -0.54
CCDC88A-210ENST00000468534 KCTD12Q96CX2 325 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-210ENST00000468534 PHF14O94880 888 aa11.62□□□□□ -0.55
CCDC88A-210ENST00000468534 ZBED2Q9BTP6 218 aa11.62□□□□□ -0.55
CCDC88A-210ENST00000468534 TYW1BQ6NUM6 668 aa11.61□□□□□ -0.55
CCDC88A-210ENST00000468534 DDX12PQ92771 950 aa11.61□□□□□ -0.55
CCDC88A-210ENST00000468534 WDR70Q9NW82 654 aa11.61□□□□□ -0.55
CCDC88A-210ENST00000468534 HCSTQ9UBK5 93 aa11.6□□□□□ -0.55
CCDC88A-210ENST00000468534 SLC4A5Q9BY07 1137 aa11.59□□□□□ -0.55
CCDC88A-210ENST00000468534 COL9A1P20849 921 aa11.58□□□□□ -0.56
CCDC88A-210ENST00000468534 E2F4Q16254 413 aa11.58□□□□□ -0.56
CCDC88A-210ENST00000468534 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms