RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	MAGI2	Q86UL8	1455 aa		19.17	■□□□□ 0.66
CTNS-205	ENST00000467663	ARHGEF40	Q8TER5	1519 aa		19.17	■□□□□ 0.66
CTNS-205	ENST00000467663	ARHGAP5	Q13017	1502 aa		19.15	■□□□□ 0.66
CTNS-205	ENST00000467663	CEP162	Q5TB80	1403 aa		19.15	■□□□□ 0.66
CTNS-205	ENST00000467663	YEATS2	Q9ULM3	1422 aa		19.14	■□□□□ 0.65
CTNS-205	ENST00000467663	ARID4B	Q4LE39	1312 aa	Predicted RBP	19.13	■□□□□ 0.65
CTNS-205	ENST00000467663	ZFYVE16	Q7Z3T8	1539 aa		19.13	■□□□□ 0.65
CTNS-205	ENST00000467663	ADAMTSL3	P82987	1691 aa		19.13	■□□□□ 0.65
CTNS-205	ENST00000467663	BCORL1	Q5H9F3	1711 aa		19.1	■□□□□ 0.65
CTNS-205	ENST00000467663	CDC42BPB	Q9Y5S2	1711 aa		19.1	■□□□□ 0.65
CTNS-205	ENST00000467663	ZNF518A	Q6AHZ1	1483 aa		19.09	■□□□□ 0.65
CTNS-205	ENST00000467663	PREX2	Q70Z35	1606 aa		19.09	■□□□□ 0.65
CTNS-205	ENST00000467663	AFAP1	Q8N556	730 aa		19.08	■□□□□ 0.64
CTNS-205	ENST00000467663	PTPRM	P28827	1452 aa		19.07	■□□□□ 0.64
CTNS-205	ENST00000467663	KDM5C	P41229	1560 aa		19.06	■□□□□ 0.64
CTNS-205	ENST00000467663	ATP10A	O60312	1499 aa		19.06	■□□□□ 0.64
CTNS-205	ENST00000467663	GPATCH8	Q9UKJ3	1502 aa	Known RBP	19.05	■□□□□ 0.64
CTNS-205	ENST00000467663	ARHGEF12	Q9NZN5	1544 aa		19.05	■□□□□ 0.64
CTNS-205	ENST00000467663	CDC42BPA	Q5VT25	1732 aa		19.04	■□□□□ 0.64
CTNS-205	ENST00000467663	ABCC1	P33527	1531 aa		19.04	■□□□□ 0.64
CTNS-205	ENST00000467663	MTUS2	Q5JR59	1369 aa		19.04	■□□□□ 0.64
CTNS-205	ENST00000467663	SIGLEC1	Q9BZZ2	1709 aa		19.03	■□□□□ 0.64
CTNS-205	ENST00000467663	MADD	Q8WXG6	1647 aa		19.03	■□□□□ 0.64
CTNS-205	ENST00000467663	HECW2	Q9P2P5	1572 aa		19.02	■□□□□ 0.64
CTNS-205	ENST00000467663	C9orf84	Q5VXU9	1444 aa		19.02	■□□□□ 0.64
CTNS-205	ENST00000467663	TRAPPC8	Q9Y2L5	1435 aa		19.02	■□□□□ 0.64
CTNS-205	ENST00000467663	MLH3	Q9UHC1	1453 aa		19.02	■□□□□ 0.63
CTNS-205	ENST00000467663	CCNB3	Q8WWL7	1395 aa		18.99	■□□□□ 0.63
CTNS-205	ENST00000467663	ITSN2	Q9NZM3	1697 aa		18.98	■□□□□ 0.63
CTNS-205	ENST00000467663	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.98	■□□□□ 0.63
CTNS-205	ENST00000467663	ZNF777	Q9ULD5	760 aa	Predicted RBP	18.98	■□□□□ 0.63
CTNS-205	ENST00000467663	EHBP1L1	Q8N3D4	1523 aa		18.98	■□□□□ 0.63
CTNS-205	ENST00000467663	MYT1L	Q9UL68	1186 aa		18.97	■□□□□ 0.63
CTNS-205	ENST00000467663	SAMD9L	Q8IVG5	1584 aa		18.97	■□□□□ 0.63
CTNS-205	ENST00000467663	MLEC	Q14165	292 aa		18.96	■□□□□ 0.63
CTNS-205	ENST00000467663	KIAA1107	Q9UPP5	1409 aa		18.96	■□□□□ 0.63
CTNS-205	ENST00000467663	DIP2C	Q9Y2E4	1556 aa		18.96	■□□□□ 0.63
CTNS-205	ENST00000467663	RERE	Q9P2R6	1566 aa		18.95	■□□□□ 0.62
CTNS-205	ENST00000467663	VPS8	Q8N3P4	1428 aa		18.95	■□□□□ 0.62
CTNS-205	ENST00000467663	RIMS1	Q86UR5	1692 aa	Known RBP	18.95	■□□□□ 0.62
CTNS-205	ENST00000467663	PLEKHH2	Q8IVE3	1493 aa		18.94	■□□□□ 0.62
CTNS-205	ENST00000467663	HNRNPM	P52272	730 aa	Known RBP eCLIP	18.93	■□□□□ 0.62
CTNS-205	ENST00000467663	SYCP2	Q9BX26	1530 aa		18.93	■□□□□ 0.62
CTNS-205	ENST00000467663	ABCA6	Q8N139	1617 aa		18.92	■□□□□ 0.62
CTNS-205	ENST00000467663	TIAM1	Q13009	1591 aa		18.92	■□□□□ 0.62
CTNS-205	ENST00000467663	KIDINS220	Q9ULH0	1771 aa		18.91	■□□□□ 0.62
CTNS-205	ENST00000467663	AGL	P35573	1532 aa		18.9	■□□□□ 0.62
CTNS-205	ENST00000467663	SPAG9	O60271	1321 aa	Known RBP	18.89	■□□□□ 0.61
CTNS-205	ENST00000467663	FER1L4	A9Z1Z3	1794 aa		18.88	■□□□□ 0.61
CTNS-205	ENST00000467663	NCOA2	Q15596	1464 aa		18.87	■□□□□ 0.61
CTNS-205	ENST00000467663	ZNF644	Q9H582	1327 aa	Predicted RBP	18.87	■□□□□ 0.61
CTNS-205	ENST00000467663	LMTK3	Q96Q04	1460 aa		18.86	■□□□□ 0.61
CTNS-205	ENST00000467663	MBD5	Q9P267	1494 aa		18.85	■□□□□ 0.61
CTNS-205	ENST00000467663	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.85	■□□□□ 0.61
CTNS-205	ENST00000467663	MAP3K1	Q13233	1512 aa		18.84	■□□□□ 0.61
CTNS-205	ENST00000467663	LRRC9	Q6ZRR7	1453 aa		18.84	■□□□□ 0.61
CTNS-205	ENST00000467663	ATP7A	Q04656	1500 aa		18.84	■□□□□ 0.61
CTNS-205	ENST00000467663	PLPPR3	Q6T4P5	718 aa		18.83	■□□□□ 0.6
CTNS-205	ENST00000467663	INO80	Q9ULG1	1556 aa	Predicted RBP	18.82	■□□□□ 0.6
CTNS-205	ENST00000467663	CEBPA	P49715	358 aa	Predicted RBP	18.8	■□□□□ 0.6
CTNS-205	ENST00000467663	KANK4	Q5T7N3	995 aa	Predicted RBP	18.8	■□□□□ 0.6
CTNS-205	ENST00000467663	RTEL1-TNFRSF6B	F6WH68	1400 aa		18.79	■□□□□ 0.6
CTNS-205	ENST00000467663	A2M	P01023	1474 aa		18.78	■□□□□ 0.6
CTNS-205	ENST00000467663	RSPH4A	Q5TD94	716 aa		18.78	■□□□□ 0.6
CTNS-205	ENST00000467663	CAMSAP2	Q08AD1	1489 aa		18.77	■□□□□ 0.6
CTNS-205	ENST00000467663	ESF1	Q9H501	851 aa	Known RBP	18.77	■□□□□ 0.6
CTNS-205	ENST00000467663	PLXNC1	O60486	1568 aa		18.76	■□□□□ 0.59
CTNS-205	ENST00000467663	CNTLN	Q9NXG0	1405 aa		18.75	■□□□□ 0.59
CTNS-205	ENST00000467663	HSPA2	P54652	639 aa		18.75	■□□□□ 0.59
CTNS-205	ENST00000467663	CCDC141	Q6ZP82	1450 aa		18.75	■□□□□ 0.59
CTNS-205	ENST00000467663	ADGB	Q8N7X0	1667 aa		18.72	■□□□□ 0.59
CTNS-205	ENST00000467663	DHX29	Q7Z478	1369 aa	Known RBP	18.71	■□□□□ 0.59
CTNS-205	ENST00000467663	ARHGEF5	Q12774	1597 aa		18.71	■□□□□ 0.59
CTNS-205	ENST00000467663	C3	P01024	1663 aa		18.7	■□□□□ 0.58
CTNS-205	ENST00000467663	PREX1	Q8TCU6	1659 aa		18.7	■□□□□ 0.58
CTNS-205	ENST00000467663	APLP2	Q06481	763 aa		18.7	■□□□□ 0.58
CTNS-205	ENST00000467663	MYOM3	Q5VTT5	1437 aa		18.7	■□□□□ 0.58
CTNS-205	ENST00000467663	MIA2	Q96PC5	1412 aa		18.7	■□□□□ 0.58
CTNS-205	ENST00000467663	PPP6R1	Q9UPN7	881 aa		18.69	■□□□□ 0.58
CTNS-205	ENST00000467663	UHRF1BP1	Q6BDS2	1440 aa		18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	TSPY4	P0CV99	314 aa		18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	TSPY10	P0CW01	314 aa		18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	GGT6	Q6P531	493 aa		18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	SETD1B	Q9UPS6	1966 aa	Known RBP	18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	ZMYM3	Q14202	1370 aa		18.68	■□□□□ 0.58
CTNS-205	ENST00000467663	MROH2A	A6NES4	1674 aa		18.66	■□□□□ 0.58
CTNS-205	ENST00000467663	NPAT	Q14207	1427 aa		18.66	■□□□□ 0.58
CTNS-205	ENST00000467663	ILDR1	Q86SU0	546 aa	Predicted RBP	18.65	■□□□□ 0.58
CTNS-205	ENST00000467663	MAST1	Q9Y2H9	1570 aa		18.62	■□□□□ 0.57
CTNS-205	ENST00000467663	CLTC	Q00610	1675 aa	Known RBP	18.61	■□□□□ 0.57
CTNS-205	ENST00000467663	KIF3B	O15066	747 aa		18.61	■□□□□ 0.57
CTNS-205	ENST00000467663	PTPRK	Q15262	1439 aa		18.58	■□□□□ 0.57
CTNS-205	ENST00000467663	FAM135A	Q9P2D6	1515 aa		18.57	■□□□□ 0.56
CTNS-205	ENST00000467663	DMRT2	Q9Y5R5	561 aa		18.56	■□□□□ 0.56
CTNS-205	ENST00000467663	FGD6	Q6ZV73	1430 aa		18.56	■□□□□ 0.56
CTNS-205	ENST00000467663	TCOF1	Q13428	1488 aa	Known RBP	18.54	■□□□□ 0.56
CTNS-205	ENST00000467663	PTPN23	Q9H3S7	1636 aa		18.54	■□□□□ 0.56
CTNS-205	ENST00000467663	STRC	Q7RTU9	1775 aa		18.54	■□□□□ 0.56
CTNS-205	ENST00000467663	ABCC5	O15440	1437 aa		18.54	■□□□□ 0.56
CTNS-205	ENST00000467663	KDM5D	Q9BY66	1539 aa		18.54	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms