RNA–Protein interactions for RNA: ENST00000467273.5

PTCD3-207, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 757 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-207ENST00000467273 RIMBP2O15034 1052 aa11.69□□□□□ -0.54
PTCD3-207ENST00000467273 VARS2Q5ST30 1063 aaKnown RBP11.67□□□□□ -0.54
PTCD3-207ENST00000467273 EIF4G1Q04637 1599 aaKnown RBP11.66□□□□□ -0.54
PTCD3-207ENST00000467273 MICALL2Q8IY33 904 aa11.63□□□□□ -0.55
PTCD3-207ENST00000467273 RNF166Q96A37 237 aaPredicted RBP11.63□□□□□ -0.55
PTCD3-207ENST00000467273 TRIM41Q8WV44 630 aa11.62□□□□□ -0.55
PTCD3-207ENST00000467273 DCAF1Q9Y4B6 1507 aa11.6□□□□□ -0.55
PTCD3-207ENST00000467273 TMEM92Q6UXU6 159 aa11.59□□□□□ -0.55
PTCD3-207ENST00000467273 MYT1LQ9UL68 1186 aa11.57□□□□□ -0.56
PTCD3-207ENST00000467273 ZSWIM6Q9HCJ5 1215 aa11.56□□□□□ -0.56
PTCD3-207ENST00000467273 RIOK3O14730 519 aaKnown RBP11.53□□□□□ -0.56
PTCD3-207ENST00000467273 SOX12O15370 315 aa11.53□□□□□ -0.56
PTCD3-207ENST00000467273 ZNF687Q8N1G0 1237 aa11.53□□□□□ -0.56
PTCD3-207ENST00000467273 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.52□□□□□ -0.57
PTCD3-207ENST00000467273 ZFP91Q96JP5 570 aaPredicted RBP11.52□□□□□ -0.57
PTCD3-207ENST00000467273 MS4A4AQ96JQ5 239 aa11.52□□□□□ -0.57
PTCD3-207ENST00000467273 PHF8Q9UPP1 1060 aa11.52□□□□□ -0.57
PTCD3-207ENST00000467273 GPR153Q6NV75 609 aa11.51□□□□□ -0.57
PTCD3-207ENST00000467273 ZCCHC6Q5VYS8 1495 aaKnown RBP11.5□□□□□ -0.57
PTCD3-207ENST00000467273 RNF25Q96BH1 459 aaPredicted RBP11.49□□□□□ -0.57
PTCD3-207ENST00000467273 ARSIQ5FYB1 569 aa11.48□□□□□ -0.57
PTCD3-207ENST00000467273 SCRIBQ14160 1630 aa11.47□□□□□ -0.57
PTCD3-207ENST00000467273 VGFO15240 615 aaPredicted RBP11.47□□□□□ -0.57
PTCD3-207ENST00000467273 CUX2O14529 1486 aa11.46□□□□□ -0.57
PTCD3-207ENST00000467273 ANKRD13DQ6ZTN6 518 aa11.46□□□□□ -0.57
PTCD3-207ENST00000467273 PTGER2P43116 358 aa11.43□□□□□ -0.58
PTCD3-207ENST00000467273 KHSRPQ92945 711 aaKnown RBP eCLIP11.43□□□□□ -0.582e-8■□□□□ 9.8
PTCD3-207ENST00000467273 ZNF316A6NFI3 1004 aaPredicted RBP11.4□□□□□ -0.58
PTCD3-207ENST00000467273 NLRP6P59044 892 aa11.39□□□□□ -0.59
PTCD3-207ENST00000467273 LSM11P83369 360 aaKnown RBP eCLIP11.36□□□□□ -0.59
PTCD3-207ENST00000467273 BCL11BQ9C0K0 894 aaPredicted RBP11.36□□□□□ -0.59
PTCD3-207ENST00000467273 FBXO22Q8NEZ5 403 aa11.33□□□□□ -0.6
PTCD3-207ENST00000467273 STK24Q9Y6E0 443 aa11.33□□□□□ -0.6
PTCD3-207ENST00000467273 NUDT7P0C024 238 aa11.32□□□□□ -0.6
PTCD3-207ENST00000467273 TAOK2Q9UL54 1235 aa11.3□□□□□ -0.6
PTCD3-207ENST00000467273 C2orf72A6NCS6 295 aa11.29□□□□□ -0.6
PTCD3-207ENST00000467273 ERCC6Q03468 1493 aa11.28□□□□□ -0.6
PTCD3-207ENST00000467273 MFRPQ9BY79 579 aa11.28□□□□□ -0.6
PTCD3-207ENST00000467273 AXIN2Q9Y2T1 843 aa11.27□□□□□ -0.61
PTCD3-207ENST00000467273 STK25O00506 426 aa11.26□□□□□ -0.61
PTCD3-207ENST00000467273 PBX2P40425 430 aa11.26□□□□□ -0.61
PTCD3-207ENST00000467273 KIF3CO14782 793 aa11.25□□□□□ -0.61
PTCD3-207ENST00000467273 LHX6Q9UPM6 363 aa11.25□□□□□ -0.61
PTCD3-207ENST00000467273 PCDHGA4Q9Y5G9 962 aa11.23□□□□□ -0.61
PTCD3-207ENST00000467273 POTEEQ6S8J3 1075 aa11.21□□□□□ -0.61
PTCD3-207ENST00000467273 TMC2Q8TDI7 906 aa11.21□□□□□ -0.61
PTCD3-207ENST00000467273 PLA2G2EQ9NZK7 142 aa11.2□□□□□ -0.62
PTCD3-207ENST00000467273 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
PTCD3-207ENST00000467273 SLC34A2O95436 690 aa11.16□□□□□ -0.62
PTCD3-207ENST00000467273 HCSTQ9UBK5 93 aa11.16□□□□□ -0.62
PTCD3-207ENST00000467273 ECM2O94769 699 aaPredicted RBP11.15□□□□□ -0.62
PTCD3-207ENST00000467273 ADGRD1Q6QNK2 874 aa11.14□□□□□ -0.63
PTCD3-207ENST00000467273 ARHGAP33O14559 1287 aa11.12□□□□□ -0.63
PTCD3-207ENST00000467273 HMGXB3Q12766 1538 aa11.1□□□□□ -0.63
PTCD3-207ENST00000467273 PSDA5PKW4 1024 aaPredicted RBP11.09□□□□□ -0.63
PTCD3-207ENST00000467273 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
PTCD3-207ENST00000467273 THOC2Q8NI27 1593 aaKnown RBP11.07□□□□□ -0.64
PTCD3-207ENST00000467273 ATAD2BQ9ULI0 1458 aa11.06□□□□□ -0.64
PTCD3-207ENST00000467273 PPP1R37O75864 691 aa11.06□□□□□ -0.64
PTCD3-207ENST00000467273 PSEN2P49810 448 aa11.06□□□□□ -0.64
PTCD3-207ENST00000467273 DMRTA1Q5VZB9 504 aa11.06□□□□□ -0.64
PTCD3-207ENST00000467273 RGL2O15211 777 aa11.05□□□□□ -0.64
PTCD3-207ENST00000467273 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
PTCD3-207ENST00000467273 KCTD12Q96CX2 325 aaKnown RBP11.03□□□□□ -0.64
PTCD3-207ENST00000467273 LAMC3Q9Y6N6 1575 aa11.03□□□□□ -0.64
PTCD3-207ENST00000467273 NESP48681 1621 aa11.02□□□□□ -0.64
PTCD3-207ENST00000467273 TK2O00142 265 aa11.02□□□□□ -0.65
PTCD3-207ENST00000467273 STAC3Q96MF2 364 aa11.02□□□□□ -0.65
PTCD3-207ENST00000467273 PPP4R3BQ5MIZ7 849 aa11.01□□□□□ -0.65
PTCD3-207ENST00000467273 HRO43593 1189 aa11□□□□□ -0.65
PTCD3-207ENST00000467273 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
PTCD3-207ENST00000467273 PTCD2Q8WV60 388 aaKnown RBP11□□□□□ -0.65
PTCD3-207ENST00000467273 KDM4FA0A1W2PPD8 638 aa10.99□□□□□ -0.65
PTCD3-207ENST00000467273 PLPP6Q8IY26 295 aa10.99□□□□□ -0.65
PTCD3-207ENST00000467273 KCNH8Q96L42 1107 aa10.98□□□□□ -0.65
PTCD3-207ENST00000467273 KCNK17Q96T54 332 aa10.98□□□□□ -0.65
PTCD3-207ENST00000467273 PKD2Q13563 968 aa10.97□□□□□ -0.65
PTCD3-207ENST00000467273 SMARCA4P51532 1647 aa10.97□□□□□ -0.65
PTCD3-207ENST00000467273 FOXK1P85037 733 aa10.96□□□□□ -0.65
PTCD3-207ENST00000467273 PDS5BQ9NTI5 1447 aa10.95□□□□□ -0.66
PTCD3-207ENST00000467273 TBC1D12O60347 775 aa10.95□□□□□ -0.66
PTCD3-207ENST00000467273 BAZ1BQ9UIG0 1483 aaKnown RBP10.94□□□□□ -0.66
PTCD3-207ENST00000467273 DSG2Q14126 1118 aa10.93□□□□□ -0.66
PTCD3-207ENST00000467273 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
PTCD3-207ENST00000467273 KIF21AQ7Z4S6 1674 aa10.92□□□□□ -0.66
PTCD3-207ENST00000467273 PTPN5P54829 565 aa10.92□□□□□ -0.66
PTCD3-207ENST00000467273 GPHNQ9NQX3 736 aaPredicted RBP10.92□□□□□ -0.66
PTCD3-207ENST00000467273 BAZ1AQ9NRL2 1556 aaPredicted RBP10.89□□□□□ -0.67
PTCD3-207ENST00000467273 UPF1Q92900 1129 aaKnown RBP eCLIP10.87□□□□□ -0.67
PTCD3-207ENST00000467273 VPS9D1Q9Y2B5 631 aa10.87□□□□□ -0.67
PTCD3-207ENST00000467273 ZNF454Q8N9F8 522 aa10.86□□□□□ -0.67
PTCD3-207ENST00000467273 WDR62O43379 1518 aa10.85□□□□□ -0.67
PTCD3-207ENST00000467273 MRC2Q9UBG0 1479 aa10.85□□□□□ -0.67
PTCD3-207ENST00000467273 HS6ST3Q8IZP7 471 aa10.81□□□□□ -0.68
PTCD3-207ENST00000467273 CADPSQ9ULU8 1353 aa10.8□□□□□ -0.68
PTCD3-207ENST00000467273 GOLGA8CPA6NN73 597 aa10.8□□□□□ -0.68
PTCD3-207ENST00000467273 OXER1Q8TDS5 423 aa10.8□□□□□ -0.68
PTCD3-207ENST00000467273 THSD4Q6ZMP0 1018 aa10.79□□□□□ -0.68
PTCD3-207ENST00000467273 BCL2L12Q9HB09 334 aa10.79□□□□□ -0.68
PTCD3-207ENST00000467273 PTPREP23469 700 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms