RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NEO1Q92859 1461 aa23.57■■□□□ 1.36
NPHP4-205ENST00000466897 ARHGAP5Q13017 1502 aa23.57■■□□□ 1.36
NPHP4-205ENST00000466897 MYOM3Q5VTT5 1437 aa23.57■■□□□ 1.36
NPHP4-205ENST00000466897 FANCAO15360 1455 aa23.56■■□□□ 1.36
NPHP4-205ENST00000466897 PHLDB1Q86UU1 1377 aa23.54■■□□□ 1.36
NPHP4-205ENST00000466897 MIA2Q96PC5 1412 aa23.54■■□□□ 1.36
NPHP4-205ENST00000466897 SAMD9LQ8IVG5 1584 aa23.51■■□□□ 1.35
NPHP4-205ENST00000466897 EFCAB2Q5VUJ9 269 aa23.49■■□□□ 1.35
NPHP4-205ENST00000466897 ABCC1P33527 1531 aa23.49■■□□□ 1.35
NPHP4-205ENST00000466897 FGD6Q6ZV73 1430 aa23.48■■□□□ 1.35
NPHP4-205ENST00000466897 PLEKHH2Q8IVE3 1493 aa23.48■■□□□ 1.35
NPHP4-205ENST00000466897 CFDP1Q9UEE9 299 aaPredicted RBP23.47■■□□□ 1.35
NPHP4-205ENST00000466897 AKNAQ7Z591 1439 aa23.47■■□□□ 1.35
NPHP4-205ENST00000466897 PTPN23Q9H3S7 1636 aa23.47■■□□□ 1.35
NPHP4-205ENST00000466897 TCOF1Q13428 1488 aaKnown RBP23.45■■□□□ 1.34
NPHP4-205ENST00000466897 PPARGC1BQ86YN6 1023 aaKnown RBP23.44■■□□□ 1.34
NPHP4-205ENST00000466897 ADGRL1O94910 1474 aa23.43■■□□□ 1.34
NPHP4-205ENST00000466897 CAMSAP2Q08AD1 1489 aa23.43■■□□□ 1.34
NPHP4-205ENST00000466897 KIAA1107Q9UPP5 1409 aa23.43■■□□□ 1.34
NPHP4-205ENST00000466897 RICTORQ6R327 1708 aa23.42■■□□□ 1.34
NPHP4-205ENST00000466897 RRBP1Q9P2E9 1410 aaKnown RBP23.4■■□□□ 1.34
NPHP4-205ENST00000466897 KDM6BO15054 1643 aa23.4■■□□□ 1.34
NPHP4-205ENST00000466897 ARHGEF5Q12774 1597 aa23.4■■□□□ 1.34
NPHP4-205ENST00000466897 SYCP2Q9BX26 1530 aa23.39■■□□□ 1.34
NPHP4-205ENST00000466897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.38■■□□□ 1.33
NPHP4-205ENST00000466897 ARHGEF12Q9NZN5 1544 aa23.37■■□□□ 1.33
NPHP4-205ENST00000466897 FRMPD1Q5SYB0 1578 aa23.36■■□□□ 1.33
NPHP4-205ENST00000466897 DENND4BO75064 1496 aaPredicted RBP23.36■■□□□ 1.33
NPHP4-205ENST00000466897 MBD5Q9P267 1494 aa23.36■■□□□ 1.33
NPHP4-205ENST00000466897 POGZQ7Z3K3 1410 aa23.35■■□□□ 1.33
NPHP4-205ENST00000466897 SCAPERQ9BY12 1400 aa23.35■■□□□ 1.33
NPHP4-205ENST00000466897 ZNF518AQ6AHZ1 1483 aa23.35■■□□□ 1.33
NPHP4-205ENST00000466897 KDM5CP41229 1560 aa23.35■■□□□ 1.33
NPHP4-205ENST00000466897 CROCC2H7BZ55 1655 aa23.35■■□□□ 1.33
NPHP4-205ENST00000466897 DNMT1P26358 1616 aaKnown RBP23.34■■□□□ 1.33
NPHP4-205ENST00000466897 ZNF777Q9ULD5 760 aaPredicted RBP23.34■■□□□ 1.33
NPHP4-205ENST00000466897 ZMYM4Q5VZL5 1548 aa23.33■■□□□ 1.33
NPHP4-205ENST00000466897 COL17A1Q9UMD9 1497 aaPredicted RBP23.33■■□□□ 1.33
NPHP4-205ENST00000466897 ZNF644Q9H582 1327 aaPredicted RBP23.33■■□□□ 1.32
NPHP4-205ENST00000466897 CCDC141Q6ZP82 1450 aa23.3■■□□□ 1.32
NPHP4-205ENST00000466897 RSPH4AQ5TD94 716 aa23.3■■□□□ 1.32
NPHP4-205ENST00000466897 TRAPPC8Q9Y2L5 1435 aa23.28■■□□□ 1.32
NPHP4-205ENST00000466897 MAST1Q9Y2H9 1570 aa23.27■■□□□ 1.32
NPHP4-205ENST00000466897 HECW2Q9P2P5 1572 aa23.27■■□□□ 1.32
NPHP4-205ENST00000466897 INO80Q9ULG1 1556 aaPredicted RBP23.27■■□□□ 1.32
NPHP4-205ENST00000466897 SHANK2Q9UPX8 1470 aa23.26■■□□□ 1.31
NPHP4-205ENST00000466897 MAGI2Q86UL8 1455 aa23.25■■□□□ 1.31
NPHP4-205ENST00000466897 HNRNPMP52272 730 aaKnown RBP eCLIP23.24■■□□□ 1.319e-11■■■■■ 36.6
NPHP4-205ENST00000466897 DAPK1P53355 1430 aa23.24■■□□□ 1.31
NPHP4-205ENST00000466897 MLH3Q9UHC1 1453 aa23.24■■□□□ 1.31
NPHP4-205ENST00000466897 KIDINS220Q9ULH0 1771 aa23.23■■□□□ 1.31
NPHP4-205ENST00000466897 ABCC5O15440 1437 aa23.22■■□□□ 1.31
NPHP4-205ENST00000466897 ZFYVE16Q7Z3T8 1539 aa23.22■■□□□ 1.31
NPHP4-205ENST00000466897 ADGBQ8N7X0 1667 aa23.22■■□□□ 1.31
NPHP4-205ENST00000466897 RAPGEF3O95398 923 aa23.21■■□□□ 1.31
NPHP4-205ENST00000466897 FAM50AQ14320 339 aaKnown RBP23.21■■□□□ 1.31
NPHP4-205ENST00000466897 RTEL1-TNFRSF6BF6WH68 1400 aa23.21■■□□□ 1.31
NPHP4-205ENST00000466897 ATP7AQ04656 1500 aa23.2■■□□□ 1.3
NPHP4-205ENST00000466897 PLXNC1O60486 1568 aa23.19■■□□□ 1.3
NPHP4-205ENST00000466897 AFAP1Q8N556 730 aa23.19■■□□□ 1.3
NPHP4-205ENST00000466897 ARHGEF40Q8TER5 1519 aa23.18■■□□□ 1.3
NPHP4-205ENST00000466897 C9orf84Q5VXU9 1444 aa23.16■■□□□ 1.3
NPHP4-205ENST00000466897 ABCA6Q8N139 1617 aa23.15■■□□□ 1.3
NPHP4-205ENST00000466897 ADGRL2O95490 1459 aa23.15■■□□□ 1.3
NPHP4-205ENST00000466897 SPAG9O60271 1321 aaKnown RBP23.14■■□□□ 1.3
NPHP4-205ENST00000466897 TSPY4P0CV99 314 aa23.14■■□□□ 1.29
NPHP4-205ENST00000466897 TSPY10P0CW01 314 aa23.14■■□□□ 1.29
NPHP4-205ENST00000466897 DIP2CQ9Y2E4 1556 aa23.14■■□□□ 1.29
NPHP4-205ENST00000466897 REREQ9P2R6 1566 aa23.13■■□□□ 1.29
NPHP4-205ENST00000466897 PTPRKQ15262 1439 aa23.1■■□□□ 1.29
NPHP4-205ENST00000466897 ROCK1Q13464 1354 aa23.09■■□□□ 1.29
NPHP4-205ENST00000466897 YEATS2Q9ULM3 1422 aa23.08■■□□□ 1.29
NPHP4-205ENST00000466897 ATP10AO60312 1499 aa23.06■■□□□ 1.28
NPHP4-205ENST00000466897 ANKRD30AQ9BXX3 1397 aa23.06■■□□□ 1.28
NPHP4-205ENST00000466897 NCOA1Q15788 1441 aa23.06■■□□□ 1.28
NPHP4-205ENST00000466897 GCC2Q8IWJ2 1684 aa23.05■■□□□ 1.28
NPHP4-205ENST00000466897 BCORL1Q5H9F3 1711 aa23.05■■□□□ 1.28
NPHP4-205ENST00000466897 DUOX2Q9NRD8 1548 aa23.03■■□□□ 1.28
NPHP4-205ENST00000466897 EIF2AK4Q9P2K8 1649 aaKnown RBP23.03■■□□□ 1.28
NPHP4-205ENST00000466897 A2MP01023 1474 aa23.01■■□□□ 1.27
NPHP4-205ENST00000466897 AGLP35573 1532 aa23.01■■□□□ 1.27
NPHP4-205ENST00000466897 MYT1LQ9UL68 1186 aa23■■□□□ 1.27
NPHP4-205ENST00000466897 KIF15Q9NS87 1388 aa23■■□□□ 1.27
NPHP4-205ENST00000466897 SIGLEC1Q9BZZ2 1709 aa22.99■■□□□ 1.27
NPHP4-205ENST00000466897 TRIM26Q12899 539 aaPredicted RBP22.99■■□□□ 1.27
NPHP4-205ENST00000466897 ITGAEP38570 1179 aa22.98■■□□□ 1.27
NPHP4-205ENST00000466897 ERBINQ96RT1 1412 aa22.98■■□□□ 1.27
NPHP4-205ENST00000466897 CHIC2Q9UKJ5 165 aa22.97■■□□□ 1.27
NPHP4-205ENST00000466897 DHX29Q7Z478 1369 aaKnown RBP22.97■■□□□ 1.27
NPHP4-205ENST00000466897 HFM1A2PYH4 1435 aa22.97■■□□□ 1.27
NPHP4-205ENST00000466897 RNF17Q9BXT8 1623 aaKnown RBP22.93■■□□□ 1.26
NPHP4-205ENST00000466897 NAIPQ13075 1403 aa22.92■■□□□ 1.26
NPHP4-205ENST00000466897 RRP7BPQ9NSQ0 103 aa22.92■■□□□ 1.26
NPHP4-205ENST00000466897 DEPDC5O75140 1603 aa22.92■■□□□ 1.26
NPHP4-205ENST00000466897 ANKRD50Q9ULJ7 1429 aa22.91■■□□□ 1.26
NPHP4-205ENST00000466897 UNC13BO14795 1591 aa22.86■■□□□ 1.25
NPHP4-205ENST00000466897 FAM135AQ9P2D6 1515 aa22.86■■□□□ 1.25
NPHP4-205ENST00000466897 PRDM15P57071 1507 aaPredicted RBP22.85■■□□□ 1.25
NPHP4-205ENST00000466897 MROH1Q8NDA8 1641 aa22.85■■□□□ 1.25
NPHP4-205ENST00000466897 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms