RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CASKIN1Q8WXD9 1431 aa28.33■■■□□ 2.13
COL7A1-206ENST00000466591 POGZQ7Z3K3 1410 aa28.32■■■□□ 2.12
COL7A1-206ENST00000466591 ZMYM4Q5VZL5 1548 aa28.3■■■□□ 2.12
COL7A1-206ENST00000466591 BCORL1Q5H9F3 1711 aa28.29■■■□□ 2.12
COL7A1-206ENST00000466591 ADAMTSL3P82987 1691 aa28.29■■■□□ 2.12
COL7A1-206ENST00000466591 PTPRMP28827 1452 aa28.28■■■□□ 2.12
COL7A1-206ENST00000466591 MAGI2Q86UL8 1455 aa28.28■■■□□ 2.12
COL7A1-206ENST00000466591 LRRIQ1Q96JM4 1722 aa28.27■■■□□ 2.12
COL7A1-206ENST00000466591 PLPPR3Q6T4P5 718 aa28.26■■■□□ 2.11
COL7A1-206ENST00000466591 MADDQ8WXG6 1647 aa28.25■■■□□ 2.11
COL7A1-206ENST00000466591 FYCO1Q9BQS8 1478 aa28.25■■■□□ 2.11
COL7A1-206ENST00000466591 YEATS2Q9ULM3 1422 aa28.25■■■□□ 2.11
COL7A1-206ENST00000466591 MLECQ14165 292 aa28.23■■■□□ 2.11
COL7A1-206ENST00000466591 ZNF518AQ6AHZ1 1483 aa28.2■■■□□ 2.1
COL7A1-206ENST00000466591 RIMS1Q86UR5 1692 aaKnown RBP28.19■■■□□ 2.1
COL7A1-206ENST00000466591 C9orf84Q5VXU9 1444 aa28.14■■■□□ 2.1
COL7A1-206ENST00000466591 ATP10AO60312 1499 aa28.14■■■□□ 2.09
COL7A1-206ENST00000466591 AFAP1Q8N556 730 aa28.13■■■□□ 2.09
COL7A1-206ENST00000466591 PREX2Q70Z35 1606 aa28.13■■■□□ 2.09
COL7A1-206ENST00000466591 ZNF777Q9ULD5 760 aaPredicted RBP28.12■■■□□ 2.09
COL7A1-206ENST00000466591 CDC42BPBQ9Y5S2 1711 aa28.1■■■□□ 2.09
COL7A1-206ENST00000466591 MTUS2Q5JR59 1369 aa28.07■■■□□ 2.08
COL7A1-206ENST00000466591 FER1L4A9Z1Z3 1794 aa28.06■■■□□ 2.08
COL7A1-206ENST00000466591 KDM5CP41229 1560 aa28.04■■■□□ 2.08
COL7A1-206ENST00000466591 ABCC1P33527 1531 aa28.03■■■□□ 2.08
COL7A1-206ENST00000466591 SIGLEC1Q9BZZ2 1709 aa28.03■■■□□ 2.08
COL7A1-206ENST00000466591 CDC42BPAQ5VT25 1732 aa28.02■■■□□ 2.08
COL7A1-206ENST00000466591 ESF1Q9H501 851 aaKnown RBP28.02■■■□□ 2.08
COL7A1-206ENST00000466591 CEP162Q5TB80 1403 aa28.01■■■□□ 2.08
COL7A1-206ENST00000466591 ITSN2Q9NZM3 1697 aa28■■■□□ 2.07
COL7A1-206ENST00000466591 CCNB3Q8WWL7 1395 aa28■■■□□ 2.07
COL7A1-206ENST00000466591 CFDP1Q9UEE9 299 aaPredicted RBP27.99■■■□□ 2.07
COL7A1-206ENST00000466591 TRAPPC8Q9Y2L5 1435 aa27.99■■■□□ 2.07
COL7A1-206ENST00000466591 ILDR1Q86SU0 546 aaPredicted RBP27.97■■■□□ 2.07
COL7A1-206ENST00000466591 MLH3Q9UHC1 1453 aa27.96■■■□□ 2.07
COL7A1-206ENST00000466591 DIP2CQ9Y2E4 1556 aa27.96■■■□□ 2.07
COL7A1-206ENST00000466591 LMTK3Q96Q04 1460 aa27.95■■■□□ 2.06
COL7A1-206ENST00000466591 ARHGEF12Q9NZN5 1544 aa27.94■■■□□ 2.06
COL7A1-206ENST00000466591 GPATCH8Q9UKJ3 1502 aaKnown RBP27.94■■■□□ 2.06
COL7A1-206ENST00000466591 ABCA6Q8N139 1617 aa27.93■■■□□ 2.06
COL7A1-206ENST00000466591 SYCP2Q9BX26 1530 aa27.92■■■□□ 2.06
COL7A1-206ENST00000466591 HNRNPMP52272 730 aaKnown RBP eCLIP27.91■■■□□ 2.06
COL7A1-206ENST00000466591 SPAG9O60271 1321 aaKnown RBP27.91■■■□□ 2.06
COL7A1-206ENST00000466591 SAMD9LQ8IVG5 1584 aa27.9■■■□□ 2.06
COL7A1-206ENST00000466591 PLEKHH2Q8IVE3 1493 aa27.9■■■□□ 2.06
COL7A1-206ENST00000466591 HSPA2P54652 639 aa27.9■■■□□ 2.06
COL7A1-206ENST00000466591 EHBP1L1Q8N3D4 1523 aa27.9■■■□□ 2.06
COL7A1-206ENST00000466591 REREQ9P2R6 1566 aa27.88■■■□□ 2.05
COL7A1-206ENST00000466591 CEBPAP49715 358 aaPredicted RBP27.86■■■□□ 2.05
COL7A1-206ENST00000466591 KIDINS220Q9ULH0 1771 aa27.83■■■□□ 2.05
COL7A1-206ENST00000466591 KIAA1107Q9UPP5 1409 aa27.82■■■□□ 2.04
COL7A1-206ENST00000466591 AGLP35573 1532 aa27.81■■■□□ 2.04
COL7A1-206ENST00000466591 LOC105371045A0A1W2PR82 267 aa27.8■■■□□ 2.04
COL7A1-206ENST00000466591 PREX1Q8TCU6 1659 aa27.78■■■□□ 2.04
COL7A1-206ENST00000466591 ATP7AQ04656 1500 aa27.78■■■□□ 2.04
COL7A1-206ENST00000466591 TIAM1Q13009 1591 aa27.77■■■□□ 2.04
COL7A1-206ENST00000466591 UHRF1BP1Q6BDS2 1440 aa27.76■■■□□ 2.04
COL7A1-206ENST00000466591 CNTLNQ9NXG0 1405 aa27.75■■■□□ 2.03
COL7A1-206ENST00000466591 SUPT6HQ7KZ85 1726 aaKnown RBP27.74■■■□□ 2.03
COL7A1-206ENST00000466591 ZNF644Q9H582 1327 aaPredicted RBP27.72■■■□□ 2.03
COL7A1-206ENST00000466591 VPS8Q8N3P4 1428 aa27.7■■■□□ 2.03
COL7A1-206ENST00000466591 A2MP01023 1474 aa27.7■■■□□ 2.02
COL7A1-206ENST00000466591 NCOA2Q15596 1464 aa27.7■■■□□ 2.02
COL7A1-206ENST00000466591 INO80Q9ULG1 1556 aaPredicted RBP27.69■■■□□ 2.02
COL7A1-206ENST00000466591 C3P01024 1663 aa27.69■■■□□ 2.02
COL7A1-206ENST00000466591 GGT6Q6P531 493 aa27.67■■■□□ 2.02
COL7A1-206ENST00000466591 FBXO41Q8TF61 875 aa27.67■■■□□ 2.02
COL7A1-206ENST00000466591 APLP2Q06481 763 aa27.63■■■□□ 2.01
COL7A1-206ENST00000466591 DMRT2Q9Y5R5 561 aa27.63■■■□□ 2.01
COL7A1-206ENST00000466591 ADGBQ8N7X0 1667 aa27.62■■■□□ 2.01
COL7A1-206ENST00000466591 CAMSAP2Q08AD1 1489 aa27.62■■■□□ 2.01
COL7A1-206ENST00000466591 SETD1BQ9UPS6 1966 aaKnown RBP27.62■■■□□ 2.01
COL7A1-206ENST00000466591 CCDC141Q6ZP82 1450 aa27.6■■■□□ 2.01
COL7A1-206ENST00000466591 MBD5Q9P267 1494 aa27.59■■■□□ 2.01
COL7A1-206ENST00000466591 RSPH4AQ5TD94 716 aa27.59■■■□□ 2.01
COL7A1-206ENST00000466591 PLXNC1O60486 1568 aa27.59■■■□□ 2.01
COL7A1-206ENST00000466591 LRRC9Q6ZRR7 1453 aa27.58■■■□□ 2.01
COL7A1-206ENST00000466591 MROH2AA6NES4 1674 aa27.58■■■□□ 2.01
COL7A1-206ENST00000466591 ZMYM3Q14202 1370 aa27.58■■■□□ 2.01
COL7A1-206ENST00000466591 RTEL1-TNFRSF6BF6WH68 1400 aa27.58■■■□□ 2
COL7A1-206ENST00000466591 CLTCQ00610 1675 aaKnown RBP27.57■■■□□ 2
COL7A1-206ENST00000466591 TSPY4P0CV99 314 aa27.57■■■□□ 2
COL7A1-206ENST00000466591 TSPY10P0CW01 314 aa27.57■■■□□ 2
COL7A1-206ENST00000466591 NPATQ14207 1427 aa27.53■■■□□ 2
COL7A1-206ENST00000466591 PPP6R1Q9UPN7 881 aa27.52■■■□□ 2
COL7A1-206ENST00000466591 KIF3BO15066 747 aa27.51■■□□□ 1.99
COL7A1-206ENST00000466591 DHX29Q7Z478 1369 aaKnown RBP27.5■■□□□ 1.99
COL7A1-206ENST00000466591 CERKQ8TCT0 537 aa27.49■■□□□ 1.99
COL7A1-206ENST00000466591 MAP3K1Q13233 1512 aa27.47■■□□□ 1.99
COL7A1-206ENST00000466591 KANK4Q5T7N3 995 aaPredicted RBP27.47■■□□□ 1.99
COL7A1-206ENST00000466591 ARHGEF5Q12774 1597 aa27.45■■□□□ 1.99
COL7A1-206ENST00000466591 STRCQ7RTU9 1775 aa27.45■■□□□ 1.98
COL7A1-206ENST00000466591 WASHC2CQ9Y4E1 1318 aa27.41■■□□□ 1.98
COL7A1-206ENST00000466591 MYOM3Q5VTT5 1437 aa27.41■■□□□ 1.98
COL7A1-206ENST00000466591 CAMSAP1Q5T5Y3 1602 aa27.4■■□□□ 1.98
COL7A1-206ENST00000466591 MYO3AQ8NEV4 1616 aa27.4■■□□□ 1.98
COL7A1-206ENST00000466591 PTPRKQ15262 1439 aa27.4■■□□□ 1.98
COL7A1-206ENST00000466591 PTPRTO14522 1441 aa27.39■■□□□ 1.97
COL7A1-206ENST00000466591 MIA2Q96PC5 1412 aa27.39■■□□□ 1.97
COL7A1-206ENST00000466591 NCOA1Q15788 1441 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms