RNA–Protein interactions for RNA: ENST00000466205.5

CD40-204, Transcript of CD40 molecule, humanhuman

TSL 1 (best)

Gene CD40, Length 822 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-204ENST00000466205 MTUS2Q5JR59 1369 aa16.21■□□□□ 0.19
CD40-204ENST00000466205 CDC42BPBQ9Y5S2 1711 aa16.2■□□□□ 0.18
CD40-204ENST00000466205 VPS8Q8N3P4 1428 aa16.19■□□□□ 0.18
CD40-204ENST00000466205 PREX2Q70Z35 1606 aa16.19■□□□□ 0.18
CD40-204ENST00000466205 ZNF777Q9ULD5 760 aaPredicted RBP16.18■□□□□ 0.18
CD40-204ENST00000466205 CDC42BPAQ5VT25 1732 aa16.17■□□□□ 0.18
CD40-204ENST00000466205 POGZQ7Z3K3 1410 aa16.17■□□□□ 0.18
CD40-204ENST00000466205 EHBP1L1Q8N3D4 1523 aa16.15■□□□□ 0.18
CD40-204ENST00000466205 MYT1LQ9UL68 1186 aa16.15■□□□□ 0.18
CD40-204ENST00000466205 YEATS2Q9ULM3 1422 aa16.15■□□□□ 0.18
CD40-204ENST00000466205 ARID4BQ4LE39 1312 aaPredicted RBP16.15■□□□□ 0.18
CD40-204ENST00000466205 TIAM1Q13009 1591 aa16.14■□□□□ 0.17
CD40-204ENST00000466205 ARHGEF40Q8TER5 1519 aa16.14■□□□□ 0.17
CD40-204ENST00000466205 GPATCH8Q9UKJ3 1502 aaKnown RBP16.14■□□□□ 0.17
CD40-204ENST00000466205 CCNB3Q8WWL7 1395 aa16.13■□□□□ 0.17
CD40-204ENST00000466205 AFAP1Q8N556 730 aa16.13■□□□□ 0.17
CD40-204ENST00000466205 ZFYVE16Q7Z3T8 1539 aa16.13■□□□□ 0.17
CD40-204ENST00000466205 ABCC1P33527 1531 aa16.12■□□□□ 0.17
CD40-204ENST00000466205 ZMYM4Q5VZL5 1548 aa16.12■□□□□ 0.17
CD40-204ENST00000466205 ARHGEF12Q9NZN5 1544 aa16.12■□□□□ 0.17
CD40-204ENST00000466205 CFDP1Q9UEE9 299 aaPredicted RBP16.11■□□□□ 0.17
CD40-204ENST00000466205 SAMD9LQ8IVG5 1584 aa16.11■□□□□ 0.17
CD40-204ENST00000466205 ITSN2Q9NZM3 1697 aa16.1■□□□□ 0.17
CD40-204ENST00000466205 TRAPPC8Q9Y2L5 1435 aa16.1■□□□□ 0.17
CD40-204ENST00000466205 ZNF518AQ6AHZ1 1483 aa16.09■□□□□ 0.17
CD40-204ENST00000466205 SIGLEC1Q9BZZ2 1709 aa16.08■□□□□ 0.17
CD40-204ENST00000466205 HNRNPMP52272 730 aaKnown RBP eCLIP16.08■□□□□ 0.16
CD40-204ENST00000466205 KANK4Q5T7N3 995 aaPredicted RBP16.08■□□□□ 0.16
CD40-204ENST00000466205 SYCP2Q9BX26 1530 aa16.08■□□□□ 0.16
CD40-204ENST00000466205 SUPT6HQ7KZ85 1726 aaKnown RBP16.08■□□□□ 0.16
CD40-204ENST00000466205 MLECQ14165 292 aa16.07■□□□□ 0.16
CD40-204ENST00000466205 NCOA2Q15596 1464 aa16.07■□□□□ 0.16
CD40-204ENST00000466205 LRRC9Q6ZRR7 1453 aa16.07■□□□□ 0.16
CD40-204ENST00000466205 KDM5CP41229 1560 aa16.06■□□□□ 0.16
CD40-204ENST00000466205 MAGI2Q86UL8 1455 aa16.06■□□□□ 0.16
CD40-204ENST00000466205 ZNF644Q9H582 1327 aaPredicted RBP16.06■□□□□ 0.16
CD40-204ENST00000466205 HECW2Q9P2P5 1572 aa16.05■□□□□ 0.16
CD40-204ENST00000466205 APLP2Q06481 763 aa16.04■□□□□ 0.16
CD40-204ENST00000466205 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
CD40-204ENST00000466205 BCORL1Q5H9F3 1711 aa16.04■□□□□ 0.16
CD40-204ENST00000466205 ATP10AO60312 1499 aa16.03■□□□□ 0.16
CD40-204ENST00000466205 ABCA6Q8N139 1617 aa16.02■□□□□ 0.16
CD40-204ENST00000466205 MADDQ8WXG6 1647 aa16.02■□□□□ 0.16
CD40-204ENST00000466205 C9orf84Q5VXU9 1444 aa16.02■□□□□ 0.15
CD40-204ENST00000466205 ADAMTSL3P82987 1691 aa16.02■□□□□ 0.15
CD40-204ENST00000466205 DIP2CQ9Y2E4 1556 aa16.01■□□□□ 0.15
CD40-204ENST00000466205 MAP3K1Q13233 1512 aa15.99■□□□□ 0.15
CD40-204ENST00000466205 MLH3Q9UHC1 1453 aa15.99■□□□□ 0.15
CD40-204ENST00000466205 RIMS1Q86UR5 1692 aaKnown RBP15.99■□□□□ 0.15
CD40-204ENST00000466205 SPAG9O60271 1321 aaKnown RBP15.98■□□□□ 0.15
CD40-204ENST00000466205 PLEKHH2Q8IVE3 1493 aa15.98■□□□□ 0.15
CD40-204ENST00000466205 KIDINS220Q9ULH0 1771 aa15.98■□□□□ 0.15
CD40-204ENST00000466205 PTPRMP28827 1452 aa15.97■□□□□ 0.15
CD40-204ENST00000466205 CAMSAP2Q08AD1 1489 aa15.97■□□□□ 0.15
CD40-204ENST00000466205 KIAA1107Q9UPP5 1409 aa15.97■□□□□ 0.15
CD40-204ENST00000466205 ATP7AQ04656 1500 aa15.94■□□□□ 0.14
CD40-204ENST00000466205 MBD5Q9P267 1494 aa15.94■□□□□ 0.14
CD40-204ENST00000466205 INO80Q9ULG1 1556 aaPredicted RBP15.93■□□□□ 0.14
CD40-204ENST00000466205 FER1L4A9Z1Z3 1794 aa15.92■□□□□ 0.14
CD40-204ENST00000466205 MYOM3Q5VTT5 1437 aa15.91■□□□□ 0.14
CD40-204ENST00000466205 CCDC141Q6ZP82 1450 aa15.91■□□□□ 0.14
CD40-204ENST00000466205 REREQ9P2R6 1566 aa15.9■□□□□ 0.14
CD40-204ENST00000466205 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
CD40-204ENST00000466205 A2MP01023 1474 aa15.87■□□□□ 0.13
CD40-204ENST00000466205 CEBPAP49715 358 aaPredicted RBP15.87■□□□□ 0.13
CD40-204ENST00000466205 MIA2Q96PC5 1412 aa15.85■□□□□ 0.13
CD40-204ENST00000466205 AGLP35573 1532 aa15.85■□□□□ 0.13
CD40-204ENST00000466205 ARHGEF5Q12774 1597 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 PTPN23Q9H3S7 1636 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 ADGBQ8N7X0 1667 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 TSPY4P0CV99 314 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 TSPY10P0CW01 314 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 GGT6Q6P531 493 aa15.84■□□□□ 0.13
CD40-204ENST00000466205 ESF1Q9H501 851 aaKnown RBP15.84■□□□□ 0.13
CD40-204ENST00000466205 PLXNC1O60486 1568 aa15.83■□□□□ 0.13
CD40-204ENST00000466205 RTEL1-TNFRSF6BF6WH68 1400 aa15.83■□□□□ 0.12
CD40-204ENST00000466205 RSPH4AQ5TD94 716 aa15.82■□□□□ 0.12
CD40-204ENST00000466205 FGD6Q6ZV73 1430 aa15.81■□□□□ 0.12
CD40-204ENST00000466205 DHX29Q7Z478 1369 aaKnown RBP15.78■□□□□ 0.12
CD40-204ENST00000466205 KIF3BO15066 747 aa15.78■□□□□ 0.12
CD40-204ENST00000466205 FAM50AQ14320 339 aaKnown RBP15.78■□□□□ 0.12
CD40-204ENST00000466205 ILDR1Q86SU0 546 aaPredicted RBP15.78■□□□□ 0.12
CD40-204ENST00000466205 LMTK3Q96Q04 1460 aa15.78■□□□□ 0.12
CD40-204ENST00000466205 ABCC5O15440 1437 aa15.77■□□□□ 0.12
CD40-204ENST00000466205 C3P01024 1663 aa15.77■□□□□ 0.12
CD40-204ENST00000466205 CLTCQ00610 1675 aaKnown RBP15.77■□□□□ 0.12
CD40-204ENST00000466205 HSPA2P54652 639 aa15.77■□□□□ 0.12
CD40-204ENST00000466205 MAST1Q9Y2H9 1570 aa15.76■□□□□ 0.11
CD40-204ENST00000466205 CHIC2Q9UKJ5 165 aa15.76■□□□□ 0.11
CD40-204ENST00000466205 TCOF1Q13428 1488 aaKnown RBP15.76■□□□□ 0.11
CD40-204ENST00000466205 DAPK1P53355 1430 aa15.76■□□□□ 0.11
CD40-204ENST00000466205 CROCC2H7BZ55 1655 aa15.75■□□□□ 0.11
CD40-204ENST00000466205 RRP7BPQ9NSQ0 103 aa15.74■□□□□ 0.11
CD40-204ENST00000466205 DNMT1P26358 1616 aaKnown RBP15.73■□□□□ 0.11
CD40-204ENST00000466205 CNTLNQ9NXG0 1405 aa15.73■□□□□ 0.11
CD40-204ENST00000466205 ZMYM3Q14202 1370 aa15.73■□□□□ 0.11
CD40-204ENST00000466205 PREX1Q8TCU6 1659 aa15.7■□□□□ 0.1
CD40-204ENST00000466205 KIF15Q9NS87 1388 aa15.7■□□□□ 0.1
CD40-204ENST00000466205 SHANK2Q9UPX8 1470 aa15.7■□□□□ 0.1
CD40-204ENST00000466205 MROH2AA6NES4 1674 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms