RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 ARHGAP5Q13017 1502 aa21.56■■□□□ 1.04
LIMD1-203ENST00000465039 APLP2Q06481 763 aa21.56■■□□□ 1.04
LIMD1-203ENST00000465039 EFCAB2Q5VUJ9 269 aa21.56■■□□□ 1.04
LIMD1-203ENST00000465039 CDC42BPBQ9Y5S2 1711 aa21.55■■□□□ 1.04
LIMD1-203ENST00000465039 GPATCH8Q9UKJ3 1502 aaKnown RBP21.55■■□□□ 1.04
LIMD1-203ENST00000465039 NCOA2Q15596 1464 aa21.53■■□□□ 1.04
LIMD1-203ENST00000465039 CCNB3Q8WWL7 1395 aa21.53■■□□□ 1.04
LIMD1-203ENST00000465039 ADGRL1O94910 1474 aa21.52■■□□□ 1.04
LIMD1-203ENST00000465039 DENND4BO75064 1496 aaPredicted RBP21.52■■□□□ 1.03
LIMD1-203ENST00000465039 PLEKHH2Q8IVE3 1493 aa21.5■■□□□ 1.03
LIMD1-203ENST00000465039 ZMYM4Q5VZL5 1548 aa21.5■■□□□ 1.03
LIMD1-203ENST00000465039 RICTORQ6R327 1708 aa21.49■■□□□ 1.03
LIMD1-203ENST00000465039 ABCC1P33527 1531 aa21.49■■□□□ 1.03
LIMD1-203ENST00000465039 FRMPD1Q5SYB0 1578 aa21.48■■□□□ 1.03
LIMD1-203ENST00000465039 POGZQ7Z3K3 1410 aa21.48■■□□□ 1.03
LIMD1-203ENST00000465039 KIAA1107Q9UPP5 1409 aa21.46■■□□□ 1.03
LIMD1-203ENST00000465039 ZNF518AQ6AHZ1 1483 aa21.46■■□□□ 1.03
LIMD1-203ENST00000465039 SCAPERQ9BY12 1400 aa21.46■■□□□ 1.03
LIMD1-203ENST00000465039 MAGI2Q86UL8 1455 aa21.45■■□□□ 1.03
LIMD1-203ENST00000465039 KDM5CP41229 1560 aa21.44■■□□□ 1.02
LIMD1-203ENST00000465039 SAMD9LQ8IVG5 1584 aa21.44■■□□□ 1.02
LIMD1-203ENST00000465039 CFDP1Q9UEE9 299 aaPredicted RBP21.43■■□□□ 1.02
LIMD1-203ENST00000465039 KANK4Q5T7N3 995 aaPredicted RBP21.42■■□□□ 1.02
LIMD1-203ENST00000465039 MIA2Q96PC5 1412 aa21.42■■□□□ 1.02
LIMD1-203ENST00000465039 MYOM3Q5VTT5 1437 aa21.4■■□□□ 1.02
LIMD1-203ENST00000465039 ARHGEF40Q8TER5 1519 aa21.39■■□□□ 1.01
LIMD1-203ENST00000465039 RAPGEF3O95398 923 aa21.37■■□□□ 1.01
LIMD1-203ENST00000465039 SYCP2Q9BX26 1530 aa21.36■■□□□ 1.01
LIMD1-203ENST00000465039 ARHGEF12Q9NZN5 1544 aa21.35■■□□□ 1.01
LIMD1-203ENST00000465039 MLH3Q9UHC1 1453 aa21.35■■□□□ 1.01
LIMD1-203ENST00000465039 HECW2Q9P2P5 1572 aa21.35■■□□□ 1.01
LIMD1-203ENST00000465039 ZFYVE16Q7Z3T8 1539 aa21.34■■□□□ 1.01
LIMD1-203ENST00000465039 CAMSAP2Q08AD1 1489 aa21.33■■□□□ 1.01
LIMD1-203ENST00000465039 ARHGEF5Q12774 1597 aa21.32■■□□□ 1
LIMD1-203ENST00000465039 MBD5Q9P267 1494 aa21.32■■□□□ 1
LIMD1-203ENST00000465039 TRAPPC8Q9Y2L5 1435 aa21.31■■□□□ 1
LIMD1-203ENST00000465039 RSPH4AQ5TD94 716 aa21.31■■□□□ 1
LIMD1-203ENST00000465039 REREQ9P2R6 1566 aa21.29■■□□□ 1
LIMD1-203ENST00000465039 ZNF777Q9ULD5 760 aaPredicted RBP21.29■■□□□ 1
LIMD1-203ENST00000465039 FGD6Q6ZV73 1430 aa21.28■■□□□ 1
LIMD1-203ENST00000465039 INO80Q9ULG1 1556 aaPredicted RBP21.27■■□□□ 1
LIMD1-203ENST00000465039 CCDC141Q6ZP82 1450 aa21.27■■□□□ 1
LIMD1-203ENST00000465039 TCOF1Q13428 1488 aaKnown RBP21.26■□□□□ 0.99
LIMD1-203ENST00000465039 RTEL1-TNFRSF6BF6WH68 1400 aa21.25■□□□□ 0.99
LIMD1-203ENST00000465039 AFAP1Q8N556 730 aa21.25■□□□□ 0.99
LIMD1-203ENST00000465039 PTPN23Q9H3S7 1636 aa21.24■□□□□ 0.99
LIMD1-203ENST00000465039 ATP10AO60312 1499 aa21.24■□□□□ 0.99
LIMD1-203ENST00000465039 ATP7AQ04656 1500 aa21.24■□□□□ 0.99
LIMD1-203ENST00000465039 DIP2CQ9Y2E4 1556 aa21.23■□□□□ 0.99
LIMD1-203ENST00000465039 KIDINS220Q9ULH0 1771 aa21.23■□□□□ 0.99
LIMD1-203ENST00000465039 C9orf84Q5VXU9 1444 aa21.23■□□□□ 0.99
LIMD1-203ENST00000465039 YEATS2Q9ULM3 1422 aa21.23■□□□□ 0.99
LIMD1-203ENST00000465039 ZNF644Q9H582 1327 aaPredicted RBP21.23■□□□□ 0.99
LIMD1-203ENST00000465039 HNRNPMP52272 730 aaKnown RBP eCLIP21.21■□□□□ 0.99
LIMD1-203ENST00000465039 MAST1Q9Y2H9 1570 aa21.21■□□□□ 0.99
LIMD1-203ENST00000465039 SPAG9O60271 1321 aaKnown RBP21.21■□□□□ 0.99
LIMD1-203ENST00000465039 ABCA6Q8N139 1617 aa21.21■□□□□ 0.99
LIMD1-203ENST00000465039 SHANK2Q9UPX8 1470 aa21.2■□□□□ 0.98
LIMD1-203ENST00000465039 AGLP35573 1532 aa21.18■□□□□ 0.98
LIMD1-203ENST00000465039 ADGBQ8N7X0 1667 aa21.16■□□□□ 0.98
LIMD1-203ENST00000465039 DNMT1P26358 1616 aaKnown RBP21.16■□□□□ 0.98
LIMD1-203ENST00000465039 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.16■□□□□ 0.98
LIMD1-203ENST00000465039 CROCC2H7BZ55 1655 aa21.15■□□□□ 0.98
LIMD1-203ENST00000465039 PLXNC1O60486 1568 aa21.14■□□□□ 0.98
LIMD1-203ENST00000465039 BCORL1Q5H9F3 1711 aa21.12■□□□□ 0.97
LIMD1-203ENST00000465039 TSPY4P0CV99 314 aa21.12■□□□□ 0.97
LIMD1-203ENST00000465039 TSPY10P0CW01 314 aa21.12■□□□□ 0.97
LIMD1-203ENST00000465039 DAPK1P53355 1430 aa21.11■□□□□ 0.97
LIMD1-203ENST00000465039 ADAMTSL3P82987 1691 aa21.09■□□□□ 0.97
LIMD1-203ENST00000465039 A2MP01023 1474 aa21.09■□□□□ 0.97
LIMD1-203ENST00000465039 MYT1LQ9UL68 1186 aa21.09■□□□□ 0.97
LIMD1-203ENST00000465039 ABCC5O15440 1437 aa21.09■□□□□ 0.97
LIMD1-203ENST00000465039 SIGLEC1Q9BZZ2 1709 aa21.09■□□□□ 0.97
LIMD1-203ENST00000465039 RRBP1Q9P2E9 1410 aaKnown RBP21.08■□□□□ 0.97
LIMD1-203ENST00000465039 ARID4BQ4LE39 1312 aaPredicted RBP21.04■□□□□ 0.96
LIMD1-203ENST00000465039 DHX29Q7Z478 1369 aaKnown RBP21.04■□□□□ 0.96
LIMD1-203ENST00000465039 ADGRL2O95490 1459 aa21.04■□□□□ 0.96
LIMD1-203ENST00000465039 FAM135AQ9P2D6 1515 aa21.04■□□□□ 0.96
LIMD1-203ENST00000465039 KDM4FA0A1W2PPD8 638 aa21.03■□□□□ 0.96
LIMD1-203ENST00000465039 EIF2AK4Q9P2K8 1649 aaKnown RBP21.02■□□□□ 0.96
LIMD1-203ENST00000465039 DUOX2Q9NRD8 1548 aa21.01■□□□□ 0.95
LIMD1-203ENST00000465039 ANKRD30AQ9BXX3 1397 aa20.99■□□□□ 0.95
LIMD1-203ENST00000465039 FAM50AQ14320 339 aaKnown RBP20.99■□□□□ 0.95
LIMD1-203ENST00000465039 MADDQ8WXG6 1647 aa20.99■□□□□ 0.95
LIMD1-203ENST00000465039 ERBINQ96RT1 1412 aa20.98■□□□□ 0.95
LIMD1-203ENST00000465039 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
LIMD1-203ENST00000465039 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
LIMD1-203ENST00000465039 FER1L4A9Z1Z3 1794 aa20.97■□□□□ 0.95
LIMD1-203ENST00000465039 NCOA1Q15788 1441 aa20.97■□□□□ 0.95
LIMD1-203ENST00000465039 CNTLNQ9NXG0 1405 aa20.97■□□□□ 0.95
LIMD1-203ENST00000465039 KIF15Q9NS87 1388 aa20.97■□□□□ 0.95
LIMD1-203ENST00000465039 PPARGC1BQ86YN6 1023 aaKnown RBP20.95■□□□□ 0.94
LIMD1-203ENST00000465039 RNF17Q9BXT8 1623 aaKnown RBP20.95■□□□□ 0.94
LIMD1-203ENST00000465039 PTPRMP28827 1452 aa20.93■□□□□ 0.94
LIMD1-203ENST00000465039 MROH2AA6NES4 1674 aa20.93■□□□□ 0.94
LIMD1-203ENST00000465039 RIMS1Q86UR5 1692 aaKnown RBP20.91■□□□□ 0.94
LIMD1-203ENST00000465039 PTPRKQ15262 1439 aa20.88■□□□□ 0.93
LIMD1-203ENST00000465039 DEPDC5O75140 1603 aa20.88■□□□□ 0.93
LIMD1-203ENST00000465039 ZC3H13Q5T200 1668 aaKnown RBP20.87■□□□□ 0.93
LIMD1-203ENST00000465039 PRDM15P57071 1507 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms