RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 POGZQ7Z3K3 1410 aa23.38■■□□□ 1.33
SNRNP40-203ENST00000463988 BCORL1Q5H9F3 1711 aa23.38■■□□□ 1.33
SNRNP40-203ENST00000463988 LRRIQ1Q96JM4 1722 aa23.38■■□□□ 1.33
SNRNP40-203ENST00000463988 PTPRMP28827 1452 aa23.37■■□□□ 1.33
SNRNP40-203ENST00000463988 ZFYVE16Q7Z3T8 1539 aa23.36■■□□□ 1.33
SNRNP40-203ENST00000463988 PCF11O94913 1555 aaKnown RBP23.35■■□□□ 1.33
SNRNP40-203ENST00000463988 YEATS2Q9ULM3 1422 aa23.33■■□□□ 1.33
SNRNP40-203ENST00000463988 FYCO1Q9BQS8 1478 aa23.33■■□□□ 1.33
SNRNP40-203ENST00000463988 ARHGAP5Q13017 1502 aa23.31■■□□□ 1.32
SNRNP40-203ENST00000463988 MADDQ8WXG6 1647 aa23.3■■□□□ 1.32
SNRNP40-203ENST00000463988 ZNF518AQ6AHZ1 1483 aa23.28■■□□□ 1.32
SNRNP40-203ENST00000463988 ATP10AO60312 1499 aa23.26■■□□□ 1.31
SNRNP40-203ENST00000463988 CDC42BPBQ9Y5S2 1711 aa23.24■■□□□ 1.31
SNRNP40-203ENST00000463988 KDM5CP41229 1560 aa23.23■■□□□ 1.31
SNRNP40-203ENST00000463988 PREX2Q70Z35 1606 aa23.22■■□□□ 1.31
SNRNP40-203ENST00000463988 SIGLEC1Q9BZZ2 1709 aa23.22■■□□□ 1.31
SNRNP40-203ENST00000463988 AFAP1Q8N556 730 aa23.22■■□□□ 1.31
SNRNP40-203ENST00000463988 C9orf84Q5VXU9 1444 aa23.22■■□□□ 1.31
SNRNP40-203ENST00000463988 RIMS1Q86UR5 1692 aaKnown RBP23.2■■□□□ 1.3
SNRNP40-203ENST00000463988 ABCC1P33527 1531 aa23.17■■□□□ 1.3
SNRNP40-203ENST00000463988 MLH3Q9UHC1 1453 aa23.17■■□□□ 1.3
SNRNP40-203ENST00000463988 MLECQ14165 292 aa23.15■■□□□ 1.3
SNRNP40-203ENST00000463988 CDC42BPAQ5VT25 1732 aa23.15■■□□□ 1.3
SNRNP40-203ENST00000463988 ARHGEF12Q9NZN5 1544 aa23.14■■□□□ 1.3
SNRNP40-203ENST00000463988 TRAPPC8Q9Y2L5 1435 aa23.13■■□□□ 1.29
SNRNP40-203ENST00000463988 LMTK3Q96Q04 1460 aa23.12■■□□□ 1.29
SNRNP40-203ENST00000463988 REREQ9P2R6 1566 aa23.12■■□□□ 1.29
SNRNP40-203ENST00000463988 MYT1LQ9UL68 1186 aa23.12■■□□□ 1.29
SNRNP40-203ENST00000463988 GPATCH8Q9UKJ3 1502 aaKnown RBP23.12■■□□□ 1.29
SNRNP40-203ENST00000463988 DIP2CQ9Y2E4 1556 aa23.11■■□□□ 1.29
SNRNP40-203ENST00000463988 ITSN2Q9NZM3 1697 aa23.11■■□□□ 1.29
SNRNP40-203ENST00000463988 FER1L4A9Z1Z3 1794 aa23.11■■□□□ 1.29
SNRNP40-203ENST00000463988 CEP162Q5TB80 1403 aa23.1■■□□□ 1.29
SNRNP40-203ENST00000463988 ILDR1Q86SU0 546 aaPredicted RBP23.08■■□□□ 1.29
SNRNP40-203ENST00000463988 MTUS2Q5JR59 1369 aa23.08■■□□□ 1.29
SNRNP40-203ENST00000463988 CCNB3Q8WWL7 1395 aa23.06■■□□□ 1.28
SNRNP40-203ENST00000463988 ZNF777Q9ULD5 760 aaPredicted RBP23.06■■□□□ 1.28
SNRNP40-203ENST00000463988 ABCA6Q8N139 1617 aa23.06■■□□□ 1.28
SNRNP40-203ENST00000463988 AGLP35573 1532 aa23.05■■□□□ 1.28
SNRNP40-203ENST00000463988 CFDP1Q9UEE9 299 aaPredicted RBP23.05■■□□□ 1.28
SNRNP40-203ENST00000463988 KIAA1107Q9UPP5 1409 aa23.05■■□□□ 1.28
SNRNP40-203ENST00000463988 SAMD9LQ8IVG5 1584 aa23.05■■□□□ 1.28
SNRNP40-203ENST00000463988 PLEKHH2Q8IVE3 1493 aa23.05■■□□□ 1.28
SNRNP40-203ENST00000463988 PLPPR3Q6T4P5 718 aa23.03■■□□□ 1.28
SNRNP40-203ENST00000463988 KIDINS220Q9ULH0 1771 aa23.02■■□□□ 1.28
SNRNP40-203ENST00000463988 SYCP2Q9BX26 1530 aa23.01■■□□□ 1.27
SNRNP40-203ENST00000463988 EHBP1L1Q8N3D4 1523 aa23■■□□□ 1.27
SNRNP40-203ENST00000463988 HNRNPMP52272 730 aaKnown RBP eCLIP23■■□□□ 1.27
SNRNP40-203ENST00000463988 SPAG9O60271 1321 aaKnown RBP22.99■■□□□ 1.27
SNRNP40-203ENST00000463988 HSPA2P54652 639 aa22.96■■□□□ 1.27
SNRNP40-203ENST00000463988 CEBPAP49715 358 aaPredicted RBP22.95■■□□□ 1.26
SNRNP40-203ENST00000463988 TIAM1Q13009 1591 aa22.95■■□□□ 1.26
SNRNP40-203ENST00000463988 ESF1Q9H501 851 aaKnown RBP22.93■■□□□ 1.26
SNRNP40-203ENST00000463988 SETD1BQ9UPS6 1966 aaKnown RBP22.92■■□□□ 1.26
SNRNP40-203ENST00000463988 PREX1Q8TCU6 1659 aa22.92■■□□□ 1.26
SNRNP40-203ENST00000463988 ATP7AQ04656 1500 aa22.92■■□□□ 1.26
SNRNP40-203ENST00000463988 CNTLNQ9NXG0 1405 aa22.91■■□□□ 1.26
SNRNP40-203ENST00000463988 INO80Q9ULG1 1556 aaPredicted RBP22.9■■□□□ 1.26
SNRNP40-203ENST00000463988 LOC105371045A0A1W2PR82 267 aa22.9■■□□□ 1.26
SNRNP40-203ENST00000463988 ZNF644Q9H582 1327 aaPredicted RBP22.88■■□□□ 1.25
SNRNP40-203ENST00000463988 MBD5Q9P267 1494 aa22.88■■□□□ 1.25
SNRNP40-203ENST00000463988 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
SNRNP40-203ENST00000463988 UHRF1BP1Q6BDS2 1440 aa22.87■■□□□ 1.25
SNRNP40-203ENST00000463988 A2MP01023 1474 aa22.86■■□□□ 1.25
SNRNP40-203ENST00000463988 NCOA2Q15596 1464 aa22.86■■□□□ 1.25
SNRNP40-203ENST00000463988 C3P01024 1663 aa22.86■■□□□ 1.25
SNRNP40-203ENST00000463988 SUPT6HQ7KZ85 1726 aaKnown RBP22.85■■□□□ 1.25
SNRNP40-203ENST00000463988 PLXNC1O60486 1568 aa22.85■■□□□ 1.25
SNRNP40-203ENST00000463988 FBXO41Q8TF61 875 aa22.85■■□□□ 1.25
SNRNP40-203ENST00000463988 RTEL1-TNFRSF6BF6WH68 1400 aa22.84■■□□□ 1.25
SNRNP40-203ENST00000463988 RSPH4AQ5TD94 716 aa22.82■■□□□ 1.24
SNRNP40-203ENST00000463988 MROH2AA6NES4 1674 aa22.81■■□□□ 1.24
SNRNP40-203ENST00000463988 PPP6R1Q9UPN7 881 aa22.8■■□□□ 1.24
SNRNP40-203ENST00000463988 ADGBQ8N7X0 1667 aa22.8■■□□□ 1.24
SNRNP40-203ENST00000463988 MAP3K1Q13233 1512 aa22.79■■□□□ 1.24
SNRNP40-203ENST00000463988 NPATQ14207 1427 aa22.79■■□□□ 1.24
SNRNP40-203ENST00000463988 LRRC9Q6ZRR7 1453 aa22.79■■□□□ 1.24
SNRNP40-203ENST00000463988 ZMYM3Q14202 1370 aa22.78■■□□□ 1.24
SNRNP40-203ENST00000463988 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
SNRNP40-203ENST00000463988 CCDC141Q6ZP82 1450 aa22.78■■□□□ 1.24
SNRNP40-203ENST00000463988 CAMSAP2Q08AD1 1489 aa22.77■■□□□ 1.24
SNRNP40-203ENST00000463988 DHX29Q7Z478 1369 aaKnown RBP22.76■■□□□ 1.23
SNRNP40-203ENST00000463988 GGT6Q6P531 493 aa22.74■■□□□ 1.23
SNRNP40-203ENST00000463988 STRCQ7RTU9 1775 aa22.73■■□□□ 1.23
SNRNP40-203ENST00000463988 ARHGEF5Q12774 1597 aa22.72■■□□□ 1.23
SNRNP40-203ENST00000463988 CLTCQ00610 1675 aaKnown RBP22.71■■□□□ 1.23
SNRNP40-203ENST00000463988 TSPY4P0CV99 314 aa22.69■■□□□ 1.22
SNRNP40-203ENST00000463988 TSPY10P0CW01 314 aa22.69■■□□□ 1.22
SNRNP40-203ENST00000463988 KANK4Q5T7N3 995 aaPredicted RBP22.69■■□□□ 1.22
SNRNP40-203ENST00000463988 CERKQ8TCT0 537 aa22.69■■□□□ 1.22
SNRNP40-203ENST00000463988 PTPRTO14522 1441 aa22.68■■□□□ 1.22
SNRNP40-203ENST00000463988 PTPRKQ15262 1439 aa22.67■■□□□ 1.22
SNRNP40-203ENST00000463988 MIA2Q96PC5 1412 aa22.66■■□□□ 1.22
SNRNP40-203ENST00000463988 NCOA1Q15788 1441 aa22.65■■□□□ 1.22
SNRNP40-203ENST00000463988 FAM135AQ9P2D6 1515 aa22.64■■□□□ 1.21
SNRNP40-203ENST00000463988 KIF3BO15066 747 aa22.64■■□□□ 1.21
SNRNP40-203ENST00000463988 MYOM3Q5VTT5 1437 aa22.64■■□□□ 1.21
SNRNP40-203ENST00000463988 MAST1Q9Y2H9 1570 aa22.6■■□□□ 1.21
SNRNP40-203ENST00000463988 APLP2Q06481 763 aa22.6■■□□□ 1.21
SNRNP40-203ENST00000463988 CAMSAP1Q5T5Y3 1602 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms