RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PLCB2Q00722 1185 aa24.3■■□□□ 1.48
CCDC88B-204ENST00000463837 SPRYD3Q8NCJ5 442 aa24.28■■□□□ 1.48
CCDC88B-204ENST00000463837 ZRSR1Q15695 479 aaKnown RBP24.28■■□□□ 1.48
CCDC88B-204ENST00000463837 SMARCA2P51531 1590 aa24.28■■□□□ 1.48
CCDC88B-204ENST00000463837 PDE3BQ13370 1112 aa24.28■■□□□ 1.48
CCDC88B-204ENST00000463837 MPHOSPH9Q99550 1183 aa24.28■■□□□ 1.48
CCDC88B-204ENST00000463837 ROCK2O75116 1388 aaKnown RBP24.27■■□□□ 1.48
CCDC88B-204ENST00000463837 USP35Q9P2H5 1018 aa24.24■■□□□ 1.47
CCDC88B-204ENST00000463837 EIF4G1Q04637 1599 aaKnown RBP24.23■■□□□ 1.47
CCDC88B-204ENST00000463837 MSNP26038 577 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-204ENST00000463837 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.22■■□□□ 1.47
CCDC88B-204ENST00000463837 POGKQ9P215 609 aa24.22■■□□□ 1.47
CCDC88B-204ENST00000463837 WIZO95785 1651 aa24.22■■□□□ 1.47
CCDC88B-204ENST00000463837 PKD2Q13563 968 aa24.21■■□□□ 1.47
CCDC88B-204ENST00000463837 FANCIQ9NVI1 1328 aa24.2■■□□□ 1.46
CCDC88B-204ENST00000463837 KANK1Q14678 1352 aa24.18■■□□□ 1.46
CCDC88B-204ENST00000463837 GBP4Q96PP9 640 aa24.18■■□□□ 1.46
CCDC88B-204ENST00000463837 HDGFP51858 240 aaKnown RBP24.18■■□□□ 1.46
CCDC88B-204ENST00000463837 GOLGA6L6A8MZA4 724 aa24.17■■□□□ 1.46
CCDC88B-204ENST00000463837 RWDD1Q9H446 243 aaPredicted RBP24.16■■□□□ 1.46
CCDC88B-204ENST00000463837 PHLDB1Q86UU1 1377 aa24.15■■□□□ 1.46
CCDC88B-204ENST00000463837 CDK11BP21127 795 aaKnown RBP24.14■■□□□ 1.46
CCDC88B-204ENST00000463837 U2SURPO15042 1029 aaKnown RBP24.14■■□□□ 1.46
CCDC88B-204ENST00000463837 MORC1Q86VD1 984 aa24.14■■□□□ 1.46
CCDC88B-204ENST00000463837 RAPGEF2Q9Y4G8 1499 aa24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 IPO8O15397 1037 aaKnown RBP24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 CHAF1AQ13111 956 aaPredicted RBP24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 PMFBP1Q8TBY8 1022 aa24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 PDS5BQ9NTI5 1447 aa24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 NLRP13Q86W25 1043 aa24.13■■□□□ 1.45
CCDC88B-204ENST00000463837 MCCP23508 829 aa24.12■■□□□ 1.45
CCDC88B-204ENST00000463837 SLKQ9H2G2 1235 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-204ENST00000463837 ANKRD30AQ9BXX3 1397 aa24.12■■□□□ 1.45
CCDC88B-204ENST00000463837 L3MBTL2Q969R5 705 aa24.11■■□□□ 1.45
CCDC88B-204ENST00000463837 GZF1Q9H116 711 aaPredicted RBP24.11■■□□□ 1.45
CCDC88B-204ENST00000463837 LMOD2Q6P5Q4 547 aa24.1■■□□□ 1.45
CCDC88B-204ENST00000463837 ZBED9Q6R2W3 1325 aa24.1■■□□□ 1.45
CCDC88B-204ENST00000463837 NRDCO43847 1150 aa24.09■■□□□ 1.45
CCDC88B-204ENST00000463837 FOXD1Q16676 465 aa24.09■■□□□ 1.45
CCDC88B-204ENST00000463837 TRHP20396 242 aaPredicted RBP24.08■■□□□ 1.45
CCDC88B-204ENST00000463837 KIF15Q9NS87 1388 aa24.08■■□□□ 1.44
CCDC88B-204ENST00000463837 GOLGA6L3A6NEY3 463 aa24.05■■□□□ 1.44
CCDC88B-204ENST00000463837 GOLGA2Q08379 1002 aa24.05■■□□□ 1.44
CCDC88B-204ENST00000463837 NUP155O75694 1391 aa24.04■■□□□ 1.44
CCDC88B-204ENST00000463837 MYBBP1AQ9BQG0 1328 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-204ENST00000463837 EIF3AQ14152 1382 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-204ENST00000463837 CALD1Q05682 793 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-204ENST00000463837 PRKRIP1Q9H875 184 aaPredicted RBP24■■□□□ 1.43
CCDC88B-204ENST00000463837 GOLGA6L4A6NEF3 574 aa23.99■■□□□ 1.43
CCDC88B-204ENST00000463837 CARMIL2Q6F5E8 1435 aa23.98■■□□□ 1.43
CCDC88B-204ENST00000463837 CENPQQ7L2Z9 268 aaPredicted RBP23.97■■□□□ 1.43
CCDC88B-204ENST00000463837 KCNJ4P48050 445 aa23.97■■□□□ 1.43
CCDC88B-204ENST00000463837 CCDC18Q5T9S5 1454 aa23.96■■□□□ 1.43
CCDC88B-204ENST00000463837 TAOK2Q9UL54 1235 aa23.96■■□□□ 1.43
CCDC88B-204ENST00000463837 OS9Q13438 667 aaPredicted RBP23.96■■□□□ 1.43
CCDC88B-204ENST00000463837 PDE4AP27815 886 aa23.95■■□□□ 1.43
CCDC88B-204ENST00000463837 FGD1P98174 961 aa23.95■■□□□ 1.42
CCDC88B-204ENST00000463837 FHOD3Q2V2M9 1422 aa23.95■■□□□ 1.42
CCDC88B-204ENST00000463837 SYAP1Q96A49 352 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-204ENST00000463837 ARID3AQ99856 593 aa23.93■■□□□ 1.42
CCDC88B-204ENST00000463837 KIAA2012Q0VF49 1180 aa23.92■■□□□ 1.42
CCDC88B-204ENST00000463837 FAM161AQ3B820 660 aa23.92■■□□□ 1.42
CCDC88B-204ENST00000463837 RRP1P56182 461 aaKnown RBP23.92■■□□□ 1.42
CCDC88B-204ENST00000463837 MLECQ14165 292 aa23.92■■□□□ 1.42
CCDC88B-204ENST00000463837 RSPH6AQ9H0K4 717 aa23.92■■□□□ 1.42
CCDC88B-204ENST00000463837 ITPRIPQ8IWB1 547 aa23.91■■□□□ 1.42
CCDC88B-204ENST00000463837 CENPJQ9HC77 1338 aaPredicted RBP23.91■■□□□ 1.42
CCDC88B-204ENST00000463837 NPHP1O15259 732 aa23.91■■□□□ 1.42
CCDC88B-204ENST00000463837 RUSC2Q8N2Y8 1516 aa23.9■■□□□ 1.42
CCDC88B-204ENST00000463837 SRPK2P78362 688 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-204ENST00000463837 GSE1Q14687 1217 aa23.89■■□□□ 1.42
CCDC88B-204ENST00000463837 SMARCA4P51532 1647 aa23.89■■□□□ 1.42
CCDC88B-204ENST00000463837 DRC7Q8IY82 874 aa23.89■■□□□ 1.41
CCDC88B-204ENST00000463837 RSPH4AQ5TD94 716 aa23.88■■□□□ 1.41
CCDC88B-204ENST00000463837 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
CCDC88B-204ENST00000463837 NAP1L2Q9ULW6 460 aaPredicted RBP23.88■■□□□ 1.41
CCDC88B-204ENST00000463837 DDX11L8A8MPP1 907 aa23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 U2AF1L5P0DN76 240 aaPredicted RBP23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 U2AF1Q01081 240 aaKnown RBP eCLIP23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 MFAP1P55081 439 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 HDGFL2Q7Z4V5 671 aaPredicted RBP23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 APBB1O00213 710 aa23.87■■□□□ 1.41
CCDC88B-204ENST00000463837 TDRD9Q8NDG6 1382 aaKnown RBP23.85■■□□□ 1.41
CCDC88B-204ENST00000463837 AMER1Q5JTC6 1135 aaPredicted RBP23.84■■□□□ 1.41
CCDC88B-204ENST00000463837 GGT6Q6P531 493 aa23.83■■□□□ 1.41
CCDC88B-204ENST00000463837 EFCAB2Q5VUJ9 269 aa23.81■■□□□ 1.4
CCDC88B-204ENST00000463837 SMC4Q9NTJ3 1288 aa23.81■■□□□ 1.4
CCDC88B-204ENST00000463837 SLC4A3P48751 1232 aa23.8■■□□□ 1.4
CCDC88B-204ENST00000463837 KIAA1211Q6ZU35 1233 aa23.8■■□□□ 1.4
CCDC88B-204ENST00000463837 EXOC6Q8TAG9 804 aa23.79■■□□□ 1.4
CCDC88B-204ENST00000463837 ATAD2BQ9ULI0 1458 aa23.79■■□□□ 1.4
CCDC88B-204ENST00000463837 USP47Q96K76 1375 aa23.78■■□□□ 1.4
CCDC88B-204ENST00000463837 SAFB2Q14151 953 aaKnown RBP eCLIP23.78■■□□□ 1.4
CCDC88B-204ENST00000463837 HTATSF1O43719 755 aaKnown RBP23.78■■□□□ 1.4
CCDC88B-204ENST00000463837 NGEFQ8N5V2 710 aa23.78■■□□□ 1.4
CCDC88B-204ENST00000463837 CGNL1Q0VF96 1302 aa23.78■■□□□ 1.4
CCDC88B-204ENST00000463837 RTF1Q92541 710 aaKnown RBP23.77■■□□□ 1.4
CCDC88B-204ENST00000463837 SKOR2Q2VWA4 1001 aaPredicted RBP23.76■■□□□ 1.39
CCDC88B-204ENST00000463837 E9PSI1 815 aa23.76■■□□□ 1.39
CCDC88B-204ENST00000463837 CLUAP1Q96AJ1 413 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms