RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 AKNAQ7Z591 1439 aa30.9■■■□□ 2.54
COL9A3-204ENST00000463487 CDC42BPAQ5VT25 1732 aa30.88■■■□□ 2.53
COL9A3-204ENST00000463487 NCOA2Q15596 1464 aa30.88■■■□□ 2.53
COL9A3-204ENST00000463487 KANK4Q5T7N3 995 aaPredicted RBP30.86■■■□□ 2.53
COL9A3-204ENST00000463487 GPATCH8Q9UKJ3 1502 aaKnown RBP30.86■■■□□ 2.53
COL9A3-204ENST00000463487 ITSN2Q9NZM3 1697 aa30.86■■■□□ 2.53
COL9A3-204ENST00000463487 CDC42BPBQ9Y5S2 1711 aa30.85■■■□□ 2.53
COL9A3-204ENST00000463487 ADGRL1O94910 1474 aa30.83■■■□□ 2.53
COL9A3-204ENST00000463487 CFDP1Q9UEE9 299 aaPredicted RBP30.82■■■□□ 2.52
COL9A3-204ENST00000463487 COL17A1Q9UMD9 1497 aaPredicted RBP30.81■■■□□ 2.52
COL9A3-204ENST00000463487 DENND4BO75064 1496 aaPredicted RBP30.8■■■□□ 2.52
COL9A3-204ENST00000463487 SCAPERQ9BY12 1400 aa30.76■■■□□ 2.51
COL9A3-204ENST00000463487 ZNF777Q9ULD5 760 aaPredicted RBP30.75■■■□□ 2.51
COL9A3-204ENST00000463487 PLEKHH2Q8IVE3 1493 aa30.74■■■□□ 2.51
COL9A3-204ENST00000463487 ABCC1P33527 1531 aa30.71■■■□□ 2.51
COL9A3-204ENST00000463487 RAPGEF3O95398 923 aa30.7■■■□□ 2.51
COL9A3-204ENST00000463487 POGZQ7Z3K3 1410 aa30.69■■■□□ 2.5
COL9A3-204ENST00000463487 RICTORQ6R327 1708 aa30.68■■■□□ 2.5
COL9A3-204ENST00000463487 SAMD9LQ8IVG5 1584 aa30.68■■■□□ 2.5
COL9A3-204ENST00000463487 MYOM3Q5VTT5 1437 aa30.68■■■□□ 2.5
COL9A3-204ENST00000463487 ZNF518AQ6AHZ1 1483 aa30.68■■■□□ 2.5
COL9A3-204ENST00000463487 FRMPD1Q5SYB0 1578 aa30.66■■■□□ 2.5
COL9A3-204ENST00000463487 MIA2Q96PC5 1412 aa30.64■■■□□ 2.5
COL9A3-204ENST00000463487 KIAA1107Q9UPP5 1409 aa30.64■■■□□ 2.5
COL9A3-204ENST00000463487 ZMYM4Q5VZL5 1548 aa30.62■■■□□ 2.49
COL9A3-204ENST00000463487 SYCP2Q9BX26 1530 aa30.62■■■□□ 2.49
COL9A3-204ENST00000463487 MAGI2Q86UL8 1455 aa30.6■■■□□ 2.49
COL9A3-204ENST00000463487 CAMSAP2Q08AD1 1489 aa30.59■■■□□ 2.49
COL9A3-204ENST00000463487 KDM5CP41229 1560 aa30.56■■■□□ 2.48
COL9A3-204ENST00000463487 ARHGEF12Q9NZN5 1544 aa30.56■■■□□ 2.48
COL9A3-204ENST00000463487 ZNF644Q9H582 1327 aaPredicted RBP30.55■■■□□ 2.48
COL9A3-204ENST00000463487 HNRNPMP52272 730 aaKnown RBP eCLIP30.55■■■□□ 2.48
COL9A3-204ENST00000463487 AFAP1Q8N556 730 aa30.55■■■□□ 2.48
COL9A3-204ENST00000463487 MYT1LQ9UL68 1186 aa30.55■■■□□ 2.48
COL9A3-204ENST00000463487 TRAPPC8Q9Y2L5 1435 aa30.55■■■□□ 2.48
COL9A3-204ENST00000463487 RSPH4AQ5TD94 716 aa30.53■■■□□ 2.48
COL9A3-204ENST00000463487 ZFYVE16Q7Z3T8 1539 aa30.52■■■□□ 2.48
COL9A3-204ENST00000463487 FGD6Q6ZV73 1430 aa30.52■■■□□ 2.48
COL9A3-204ENST00000463487 HECW2Q9P2P5 1572 aa30.51■■■□□ 2.47
COL9A3-204ENST00000463487 ARHGEF40Q8TER5 1519 aa30.5■■■□□ 2.47
COL9A3-204ENST00000463487 PPARGC1BQ86YN6 1023 aaKnown RBP30.48■■■□□ 2.47
COL9A3-204ENST00000463487 MLH3Q9UHC1 1453 aa30.48■■■□□ 2.47
COL9A3-204ENST00000463487 PTPN23Q9H3S7 1636 aa30.47■■■□□ 2.47
COL9A3-204ENST00000463487 CCDC141Q6ZP82 1450 aa30.47■■■□□ 2.47
COL9A3-204ENST00000463487 MBD5Q9P267 1494 aa30.47■■■□□ 2.47
COL9A3-204ENST00000463487 SPAG9O60271 1321 aaKnown RBP30.47■■■□□ 2.47
COL9A3-204ENST00000463487 ARHGEF5Q12774 1597 aa30.45■■■□□ 2.47
COL9A3-204ENST00000463487 YEATS2Q9ULM3 1422 aa30.42■■■□□ 2.46
COL9A3-204ENST00000463487 TCOF1Q13428 1488 aaKnown RBP30.42■■■□□ 2.46
COL9A3-204ENST00000463487 TSPY4P0CV99 314 aa30.4■■■□□ 2.46
COL9A3-204ENST00000463487 TSPY10P0CW01 314 aa30.4■■■□□ 2.46
COL9A3-204ENST00000463487 ATP10AO60312 1499 aa30.38■■■□□ 2.45
COL9A3-204ENST00000463487 ATP7AQ04656 1500 aa30.38■■■□□ 2.45
COL9A3-204ENST00000463487 INO80Q9ULG1 1556 aaPredicted RBP30.37■■■□□ 2.45
COL9A3-204ENST00000463487 RTEL1-TNFRSF6BF6WH68 1400 aa30.36■■■□□ 2.45
COL9A3-204ENST00000463487 C9orf84Q5VXU9 1444 aa30.36■■■□□ 2.45
COL9A3-204ENST00000463487 KIDINS220Q9ULH0 1771 aa30.36■■■□□ 2.45
COL9A3-204ENST00000463487 FAM50AQ14320 339 aaKnown RBP30.35■■■□□ 2.45
COL9A3-204ENST00000463487 DIP2CQ9Y2E4 1556 aa30.34■■■□□ 2.45
COL9A3-204ENST00000463487 ARID4BQ4LE39 1312 aaPredicted RBP30.33■■■□□ 2.45
COL9A3-204ENST00000463487 ABCA6Q8N139 1617 aa30.33■■■□□ 2.45
COL9A3-204ENST00000463487 DNMT1P26358 1616 aaKnown RBP30.29■■■□□ 2.44
COL9A3-204ENST00000463487 REREQ9P2R6 1566 aa30.29■■■□□ 2.44
COL9A3-204ENST00000463487 MAST1Q9Y2H9 1570 aa30.28■■■□□ 2.44
COL9A3-204ENST00000463487 SHANK2Q9UPX8 1470 aa30.27■■■□□ 2.44
COL9A3-204ENST00000463487 DAPK1P53355 1430 aa30.27■■■□□ 2.44
COL9A3-204ENST00000463487 CROCC2H7BZ55 1655 aa30.26■■■□□ 2.43
COL9A3-204ENST00000463487 ABCC5O15440 1437 aa30.25■■■□□ 2.43
COL9A3-204ENST00000463487 ADGBQ8N7X0 1667 aa30.25■■■□□ 2.43
COL9A3-204ENST00000463487 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.25■■■□□ 2.433e-9■■□□□ 11.7
COL9A3-204ENST00000463487 A2MP01023 1474 aa30.22■■■□□ 2.43
COL9A3-204ENST00000463487 RRBP1Q9P2E9 1410 aaKnown RBP30.22■■■□□ 2.43
COL9A3-204ENST00000463487 AGLP35573 1532 aa30.19■■■□□ 2.42
COL9A3-204ENST00000463487 PLXNC1O60486 1568 aa30.18■■■□□ 2.42
COL9A3-204ENST00000463487 BCORL1Q5H9F3 1711 aa30.16■■■□□ 2.42
COL9A3-204ENST00000463487 ANKRD30AQ9BXX3 1397 aa30.15■■■□□ 2.42
COL9A3-204ENST00000463487 DHX29Q7Z478 1369 aaKnown RBP30.14■■■□□ 2.41
COL9A3-204ENST00000463487 SIGLEC1Q9BZZ2 1709 aa30.13■■■□□ 2.41
COL9A3-204ENST00000463487 CHIC2Q9UKJ5 165 aa30.1■■■□□ 2.41
COL9A3-204ENST00000463487 KDM4FA0A1W2PPD8 638 aa30.09■■■□□ 2.41
COL9A3-204ENST00000463487 MLECQ14165 292 aa30.09■■■□□ 2.41
COL9A3-204ENST00000463487 KIF15Q9NS87 1388 aa30.09■■■□□ 2.41
COL9A3-204ENST00000463487 DUOX2Q9NRD8 1548 aa30.08■■■□□ 2.41
COL9A3-204ENST00000463487 ADGRL2O95490 1459 aa30.07■■■□□ 2.4
COL9A3-204ENST00000463487 ADAMTSL3P82987 1691 aa30.07■■■□□ 2.4
COL9A3-204ENST00000463487 ITGAEP38570 1179 aa30.06■■■□□ 2.4
COL9A3-204ENST00000463487 RRP7BPQ9NSQ0 103 aa30.05■■■□□ 2.4
COL9A3-204ENST00000463487 NCOA1Q15788 1441 aa30.05■■■□□ 2.4
COL9A3-204ENST00000463487 ESF1Q9H501 851 aaKnown RBP30.04■■■□□ 2.4
COL9A3-204ENST00000463487 ROCK1Q13464 1354 aa30.02■■■□□ 2.4
COL9A3-204ENST00000463487 EIF2AK4Q9P2K8 1649 aaKnown RBP30.01■■■□□ 2.39
COL9A3-204ENST00000463487 ERBINQ96RT1 1412 aa30.01■■■□□ 2.39
COL9A3-204ENST00000463487 MADDQ8WXG6 1647 aa30■■■□□ 2.39
COL9A3-204ENST00000463487 KIF3BO15066 747 aa30■■■□□ 2.39
COL9A3-204ENST00000463487 AEBP2Q6ZN18 517 aaPredicted RBP30■■■□□ 2.39
COL9A3-204ENST00000463487 FER1L4A9Z1Z3 1794 aa30■■■□□ 2.39
COL9A3-204ENST00000463487 PTPRKQ15262 1439 aa29.98■■■□□ 2.39
COL9A3-204ENST00000463487 GGT6Q6P531 493 aa29.97■■■□□ 2.39
COL9A3-204ENST00000463487 PPP6R1Q9UPN7 881 aa29.97■■■□□ 2.39
COL9A3-204ENST00000463487 CNTLNQ9NXG0 1405 aa29.95■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms