RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 ZMYM4Q5VZL5 1548 aa11.69□□□□□ -0.54
PTPRF-210ENST00000463041 AFAP1Q8N556 730 aa11.68□□□□□ -0.54
PTPRF-210ENST00000463041 ARHGAP5Q13017 1502 aa11.68□□□□□ -0.54
PTPRF-210ENST00000463041 POGZQ7Z3K3 1410 aa11.68□□□□□ -0.54
PTPRF-210ENST00000463041 BCORL1Q5H9F3 1711 aa11.67□□□□□ -0.54
PTPRF-210ENST00000463041 CDC42BPBQ9Y5S2 1711 aa11.67□□□□□ -0.54
PTPRF-210ENST00000463041 ZFYVE16Q7Z3T8 1539 aa11.66□□□□□ -0.54
PTPRF-210ENST00000463041 ARHGEF40Q8TER5 1519 aa11.66□□□□□ -0.54
PTPRF-210ENST00000463041 ATP10AO60312 1499 aa11.66□□□□□ -0.54
PTPRF-210ENST00000463041 MYT1LQ9UL68 1186 aa11.66□□□□□ -0.54
PTPRF-210ENST00000463041 YEATS2Q9ULM3 1422 aa11.66□□□□□ -0.54
PTPRF-210ENST00000463041 PTPRMP28827 1452 aa11.65□□□□□ -0.54
PTPRF-210ENST00000463041 ZNF518AQ6AHZ1 1483 aa11.65□□□□□ -0.54
PTPRF-210ENST00000463041 LOC105371045A0A1W2PR82 267 aa11.64□□□□□ -0.55
PTPRF-210ENST00000463041 CEP162Q5TB80 1403 aa11.63□□□□□ -0.55
PTPRF-210ENST00000463041 MTUS2Q5JR59 1369 aa11.63□□□□□ -0.55
PTPRF-210ENST00000463041 CDC42BPAQ5VT25 1732 aa11.63□□□□□ -0.55
PTPRF-210ENST00000463041 PREX2Q70Z35 1606 aa11.62□□□□□ -0.55
PTPRF-210ENST00000463041 MLECQ14165 292 aa11.62□□□□□ -0.55
PTPRF-210ENST00000463041 ZNF777Q9ULD5 760 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-210ENST00000463041 HECW2Q9P2P5 1572 aa11.62□□□□□ -0.55
PTPRF-210ENST00000463041 GPATCH8Q9UKJ3 1502 aaKnown RBP11.61□□□□□ -0.55
PTPRF-210ENST00000463041 CFDP1Q9UEE9 299 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-210ENST00000463041 MLH3Q9UHC1 1453 aa11.61□□□□□ -0.55
PTPRF-210ENST00000463041 C9orf84Q5VXU9 1444 aa11.6□□□□□ -0.55
PTPRF-210ENST00000463041 MADDQ8WXG6 1647 aa11.6□□□□□ -0.55
PTPRF-210ENST00000463041 KDM5CP41229 1560 aa11.6□□□□□ -0.55
PTPRF-210ENST00000463041 CCNB3Q8WWL7 1395 aa11.6□□□□□ -0.55
PTPRF-210ENST00000463041 TRAPPC8Q9Y2L5 1435 aa11.6□□□□□ -0.55
PTPRF-210ENST00000463041 HNRNPMP52272 730 aaKnown RBP eCLIP11.59□□□□□ -0.55
PTPRF-210ENST00000463041 SETD1BQ9UPS6 1966 aaKnown RBP11.59□□□□□ -0.55
PTPRF-210ENST00000463041 ARHGEF12Q9NZN5 1544 aa11.59□□□□□ -0.55
PTPRF-210ENST00000463041 ABCC1P33527 1531 aa11.58□□□□□ -0.56
PTPRF-210ENST00000463041 KIAA1107Q9UPP5 1409 aa11.58□□□□□ -0.56
PTPRF-210ENST00000463041 RIMS1Q86UR5 1692 aaKnown RBP11.58□□□□□ -0.56
PTPRF-210ENST00000463041 SIGLEC1Q9BZZ2 1709 aa11.57□□□□□ -0.56
PTPRF-210ENST00000463041 SPAG9O60271 1321 aaKnown RBP11.57□□□□□ -0.56
PTPRF-210ENST00000463041 PLEKHH2Q8IVE3 1493 aa11.57□□□□□ -0.56
PTPRF-210ENST00000463041 ITSN2Q9NZM3 1697 aa11.56□□□□□ -0.56
PTPRF-210ENST00000463041 REREQ9P2R6 1566 aa11.55□□□□□ -0.56
PTPRF-210ENST00000463041 PLPPR3Q6T4P5 718 aa11.55□□□□□ -0.56
PTPRF-210ENST00000463041 DIP2CQ9Y2E4 1556 aa11.54□□□□□ -0.56
PTPRF-210ENST00000463041 FER1L4A9Z1Z3 1794 aa11.54□□□□□ -0.56
PTPRF-210ENST00000463041 KIDINS220Q9ULH0 1771 aa11.54□□□□□ -0.56
PTPRF-210ENST00000463041 ESF1Q9H501 851 aaKnown RBP11.54□□□□□ -0.56
PTPRF-210ENST00000463041 SAMD9LQ8IVG5 1584 aa11.54□□□□□ -0.56
PTPRF-210ENST00000463041 RSPH4AQ5TD94 716 aa11.53□□□□□ -0.56
PTPRF-210ENST00000463041 AGLP35573 1532 aa11.53□□□□□ -0.56
PTPRF-210ENST00000463041 EHBP1L1Q8N3D4 1523 aa11.53□□□□□ -0.56
PTPRF-210ENST00000463041 CEBPAP49715 358 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-210ENST00000463041 ZNF644Q9H582 1327 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-210ENST00000463041 ABCA6Q8N139 1617 aa11.52□□□□□ -0.57
PTPRF-210ENST00000463041 VPS8Q8N3P4 1428 aa11.52□□□□□ -0.57
PTPRF-210ENST00000463041 SYCP2Q9BX26 1530 aa11.51□□□□□ -0.57
PTPRF-210ENST00000463041 LMTK3Q96Q04 1460 aa11.51□□□□□ -0.57
PTPRF-210ENST00000463041 TIAM1Q13009 1591 aa11.5□□□□□ -0.57
PTPRF-210ENST00000463041 SUPT6HQ7KZ85 1726 aaKnown RBP11.49□□□□□ -0.57
PTPRF-210ENST00000463041 NCOA2Q15596 1464 aa11.49□□□□□ -0.57
PTPRF-210ENST00000463041 HSPA2P54652 639 aa11.48□□□□□ -0.57
PTPRF-210ENST00000463041 PPP6R1Q9UPN7 881 aa11.48□□□□□ -0.57
PTPRF-210ENST00000463041 MBD5Q9P267 1494 aa11.48□□□□□ -0.57
PTPRF-210ENST00000463041 MAP3K1Q13233 1512 aa11.48□□□□□ -0.57
PTPRF-210ENST00000463041 ATP7AQ04656 1500 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 LRRC9Q6ZRR7 1453 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 RTEL1-TNFRSF6BF6WH68 1400 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 CNTLNQ9NXG0 1405 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 TSPY4P0CV99 314 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 TSPY10P0CW01 314 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 APLP2Q06481 763 aa11.47□□□□□ -0.57
PTPRF-210ENST00000463041 ILDR1Q86SU0 546 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-210ENST00000463041 A2MP01023 1474 aa11.46□□□□□ -0.57
PTPRF-210ENST00000463041 KANK4Q5T7N3 995 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-210ENST00000463041 GGT6Q6P531 493 aa11.45□□□□□ -0.58
PTPRF-210ENST00000463041 ZMYM3Q14202 1370 aa11.44□□□□□ -0.58
PTPRF-210ENST00000463041 DHX29Q7Z478 1369 aaKnown RBP11.44□□□□□ -0.58
PTPRF-210ENST00000463041 DMRT2Q9Y5R5 561 aa11.44□□□□□ -0.58
PTPRF-210ENST00000463041 INO80Q9ULG1 1556 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-210ENST00000463041 C3P01024 1663 aa11.43□□□□□ -0.58
PTPRF-210ENST00000463041 ADGBQ8N7X0 1667 aa11.43□□□□□ -0.58
PTPRF-210ENST00000463041 PREX1Q8TCU6 1659 aa11.43□□□□□ -0.58
PTPRF-210ENST00000463041 UHRF1BP1Q6BDS2 1440 aa11.43□□□□□ -0.58
PTPRF-210ENST00000463041 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
PTPRF-210ENST00000463041 CCDC141Q6ZP82 1450 aa11.42□□□□□ -0.58
PTPRF-210ENST00000463041 MIA2Q96PC5 1412 aa11.41□□□□□ -0.58
PTPRF-210ENST00000463041 PLXNC1O60486 1568 aa11.41□□□□□ -0.58
PTPRF-210ENST00000463041 MROH2AA6NES4 1674 aa11.4□□□□□ -0.58
PTPRF-210ENST00000463041 KIF3BO15066 747 aa11.4□□□□□ -0.58
PTPRF-210ENST00000463041 NPATQ14207 1427 aa11.4□□□□□ -0.58
PTPRF-210ENST00000463041 ARHGEF5Q12774 1597 aa11.39□□□□□ -0.59
PTPRF-210ENST00000463041 FBXO41Q8TF61 875 aa11.39□□□□□ -0.59
PTPRF-210ENST00000463041 MYOM3Q5VTT5 1437 aa11.38□□□□□ -0.59
PTPRF-210ENST00000463041 CLTCQ00610 1675 aaKnown RBP11.37□□□□□ -0.59
PTPRF-210ENST00000463041 STRCQ7RTU9 1775 aa11.36□□□□□ -0.59
PTPRF-210ENST00000463041 WASHC2CQ9Y4E1 1318 aa11.35□□□□□ -0.59
PTPRF-210ENST00000463041 PTPRKQ15262 1439 aa11.35□□□□□ -0.59
PTPRF-210ENST00000463041 CERKQ8TCT0 537 aa11.34□□□□□ -0.59
PTPRF-210ENST00000463041 MAST1Q9Y2H9 1570 aa11.33□□□□□ -0.6
PTPRF-210ENST00000463041 PTPRTO14522 1441 aa11.33□□□□□ -0.6
PTPRF-210ENST00000463041 FAM135AQ9P2D6 1515 aa11.32□□□□□ -0.6
PTPRF-210ENST00000463041 PKD2Q13563 968 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms