RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 MAGI2Q86UL8 1455 aa26.5■■□□□ 1.83
COL7A1-204ENST00000462475 TROQ12816 1431 aaPredicted RBP26.5■■□□□ 1.83
COL7A1-204ENST00000462475 CDK11AQ9UQ88 783 aaPredicted RBP26.5■■□□□ 1.83
COL7A1-204ENST00000462475 MYO5CQ9NQX4 1742 aa26.48■■□□□ 1.83
COL7A1-204ENST00000462475 RIMS1Q86UR5 1692 aaKnown RBP26.48■■□□□ 1.83
COL7A1-204ENST00000462475 LRRIQ1Q96JM4 1722 aa26.47■■□□□ 1.83
COL7A1-204ENST00000462475 EFCAB2Q5VUJ9 269 aa26.45■■□□□ 1.82
COL7A1-204ENST00000462475 CLIP1P30622 1438 aa26.44■■□□□ 1.82
COL7A1-204ENST00000462475 PCF11O94913 1555 aaKnown RBP26.44■■□□□ 1.82
COL7A1-204ENST00000462475 LMTK3Q96Q04 1460 aa26.42■■□□□ 1.82
COL7A1-204ENST00000462475 ARHGAP5Q13017 1502 aa26.41■■□□□ 1.82
COL7A1-204ENST00000462475 CASKIN1Q8WXD9 1431 aa26.39■■□□□ 1.82
COL7A1-204ENST00000462475 MLECQ14165 292 aa26.38■■□□□ 1.81
COL7A1-204ENST00000462475 ATP10AO60312 1499 aa26.36■■□□□ 1.81
COL7A1-204ENST00000462475 ZNF518AQ6AHZ1 1483 aa26.36■■□□□ 1.81
COL7A1-204ENST00000462475 PLPPR3Q6T4P5 718 aa26.36■■□□□ 1.81
COL7A1-204ENST00000462475 C9orf84Q5VXU9 1444 aa26.36■■□□□ 1.81
COL7A1-204ENST00000462475 CCDC18Q5T9S5 1454 aa26.36■■□□□ 1.81
COL7A1-204ENST00000462475 KDM5CP41229 1560 aa26.33■■□□□ 1.81
COL7A1-204ENST00000462475 AFAP1Q8N556 730 aa26.32■■□□□ 1.8
COL7A1-204ENST00000462475 FER1L4A9Z1Z3 1794 aa26.31■■□□□ 1.8
COL7A1-204ENST00000462475 ARHGEF12Q9NZN5 1544 aa26.31■■□□□ 1.8
COL7A1-204ENST00000462475 CDC42BPBQ9Y5S2 1711 aa26.31■■□□□ 1.8
COL7A1-204ENST00000462475 FYCO1Q9BQS8 1478 aa26.3■■□□□ 1.8
COL7A1-204ENST00000462475 PREX2Q70Z35 1606 aa26.29■■□□□ 1.8
COL7A1-204ENST00000462475 HSPA2P54652 639 aa26.27■■□□□ 1.8
COL7A1-204ENST00000462475 DIP2CQ9Y2E4 1556 aa26.26■■□□□ 1.79
COL7A1-204ENST00000462475 ABCC1P33527 1531 aa26.26■■□□□ 1.79
COL7A1-204ENST00000462475 TRAPPC8Q9Y2L5 1435 aa26.23■■□□□ 1.79
COL7A1-204ENST00000462475 MYT1LQ9UL68 1186 aa26.22■■□□□ 1.79
COL7A1-204ENST00000462475 MLH3Q9UHC1 1453 aa26.22■■□□□ 1.79
COL7A1-204ENST00000462475 ABCA6Q8N139 1617 aa26.21■■□□□ 1.79
COL7A1-204ENST00000462475 ITSN2Q9NZM3 1697 aa26.2■■□□□ 1.78
COL7A1-204ENST00000462475 REREQ9P2R6 1566 aa26.2■■□□□ 1.78
COL7A1-204ENST00000462475 CDC42BPAQ5VT25 1732 aa26.19■■□□□ 1.78
COL7A1-204ENST00000462475 FBXO41Q8TF61 875 aa26.17■■□□□ 1.78
COL7A1-204ENST00000462475 CEBPAP49715 358 aaPredicted RBP26.16■■□□□ 1.78
COL7A1-204ENST00000462475 GPATCH8Q9UKJ3 1502 aaKnown RBP26.13■■□□□ 1.77
COL7A1-204ENST00000462475 SAMD9LQ8IVG5 1584 aa26.12■■□□□ 1.77
COL7A1-204ENST00000462475 KIDINS220Q9ULH0 1771 aa26.11■■□□□ 1.77
COL7A1-204ENST00000462475 AGLP35573 1532 aa26.11■■□□□ 1.77
COL7A1-204ENST00000462475 PREX1Q8TCU6 1659 aa26.1■■□□□ 1.77
COL7A1-204ENST00000462475 ZNF777Q9ULD5 760 aaPredicted RBP26.1■■□□□ 1.77
COL7A1-204ENST00000462475 SYCP2Q9BX26 1530 aa26.09■■□□□ 1.77
COL7A1-204ENST00000462475 MTUS2Q5JR59 1369 aa26.03■■□□□ 1.76
COL7A1-204ENST00000462475 UHRF1BP1Q6BDS2 1440 aa26.03■■□□□ 1.76
COL7A1-204ENST00000462475 HNRNPMP52272 730 aaKnown RBP eCLIP26.02■■□□□ 1.76
COL7A1-204ENST00000462475 CCNB3Q8WWL7 1395 aa26.02■■□□□ 1.76
COL7A1-204ENST00000462475 C3P01024 1663 aa26.01■■□□□ 1.75
COL7A1-204ENST00000462475 KIAA1107Q9UPP5 1409 aa26■■□□□ 1.75
COL7A1-204ENST00000462475 SPAG9O60271 1321 aaKnown RBP26■■□□□ 1.75
COL7A1-204ENST00000462475 CFDP1Q9UEE9 299 aaPredicted RBP26■■□□□ 1.75
COL7A1-204ENST00000462475 PLEKHH2Q8IVE3 1493 aa25.98■■□□□ 1.75
COL7A1-204ENST00000462475 ESF1Q9H501 851 aaKnown RBP25.98■■□□□ 1.75
COL7A1-204ENST00000462475 ATP7AQ04656 1500 aa25.98■■□□□ 1.75
COL7A1-204ENST00000462475 CEP162Q5TB80 1403 aa25.97■■□□□ 1.75
COL7A1-204ENST00000462475 CNTLNQ9NXG0 1405 aa25.96■■□□□ 1.75
COL7A1-204ENST00000462475 INO80Q9ULG1 1556 aaPredicted RBP25.95■■□□□ 1.75
COL7A1-204ENST00000462475 EHBP1L1Q8N3D4 1523 aa25.95■■□□□ 1.74
COL7A1-204ENST00000462475 TIAM1Q13009 1591 aa25.95■■□□□ 1.74
COL7A1-204ENST00000462475 STRCQ7RTU9 1775 aa25.92■■□□□ 1.74
COL7A1-204ENST00000462475 PLXNC1O60486 1568 aa25.91■■□□□ 1.74
COL7A1-204ENST00000462475 CERKQ8TCT0 537 aa25.91■■□□□ 1.74
COL7A1-204ENST00000462475 SETD1BQ9UPS6 1966 aaKnown RBP25.91■■□□□ 1.74
COL7A1-204ENST00000462475 SUPT6HQ7KZ85 1726 aaKnown RBP25.9■■□□□ 1.74
COL7A1-204ENST00000462475 A2MP01023 1474 aa25.9■■□□□ 1.74
COL7A1-204ENST00000462475 ZNF644Q9H582 1327 aaPredicted RBP25.89■■□□□ 1.74
COL7A1-204ENST00000462475 MBD5Q9P267 1494 aa25.86■■□□□ 1.73
COL7A1-204ENST00000462475 MROH2AA6NES4 1674 aa25.86■■□□□ 1.73
COL7A1-204ENST00000462475 DMRT2Q9Y5R5 561 aa25.85■■□□□ 1.73
COL7A1-204ENST00000462475 ZMYM3Q14202 1370 aa25.83■■□□□ 1.73
COL7A1-204ENST00000462475 NPATQ14207 1427 aa25.83■■□□□ 1.73
COL7A1-204ENST00000462475 CLTCQ00610 1675 aaKnown RBP25.8■■□□□ 1.72
COL7A1-204ENST00000462475 PTPRTO14522 1441 aa25.8■■□□□ 1.72
COL7A1-204ENST00000462475 NCOA1Q15788 1441 aa25.8■■□□□ 1.72
COL7A1-204ENST00000462475 NCOA2Q15596 1464 aa25.79■■□□□ 1.72
COL7A1-204ENST00000462475 ADGBQ8N7X0 1667 aa25.79■■□□□ 1.72
COL7A1-204ENST00000462475 GGT6Q6P531 493 aa25.78■■□□□ 1.72
COL7A1-204ENST00000462475 RTEL1-TNFRSF6BF6WH68 1400 aa25.76■■□□□ 1.71
COL7A1-204ENST00000462475 CAMSAP2Q08AD1 1489 aa25.75■■□□□ 1.71
COL7A1-204ENST00000462475 PTPRKQ15262 1439 aa25.74■■□□□ 1.71
COL7A1-204ENST00000462475 CAMSAP1Q5T5Y3 1602 aa25.74■■□□□ 1.71
COL7A1-204ENST00000462475 CCDC141Q6ZP82 1450 aa25.73■■□□□ 1.71
COL7A1-204ENST00000462475 MYO3AQ8NEV4 1616 aa25.72■■□□□ 1.71
COL7A1-204ENST00000462475 DHX29Q7Z478 1369 aaKnown RBP25.7■■□□□ 1.71
COL7A1-204ENST00000462475 VPS8Q8N3P4 1428 aa25.7■■□□□ 1.7
COL7A1-204ENST00000462475 LOC105371045A0A1W2PR82 267 aa25.69■■□□□ 1.7
COL7A1-204ENST00000462475 ZNF142P52746 1687 aaPredicted RBP25.68■■□□□ 1.7
COL7A1-204ENST00000462475 PPP6R1Q9UPN7 881 aa25.68■■□□□ 1.7
COL7A1-204ENST00000462475 LTBP4Q8N2S1 1624 aa25.67■■□□□ 1.7
COL7A1-204ENST00000462475 CEP170BQ9Y4F5 1589 aaPredicted RBP25.67■■□□□ 1.7
COL7A1-204ENST00000462475 LRRC9Q6ZRR7 1453 aa25.66■■□□□ 1.7
COL7A1-204ENST00000462475 NCKAP5LQ9HCH0 1330 aa25.63■■□□□ 1.69
COL7A1-204ENST00000462475 ARHGEF5Q12774 1597 aa25.63■■□□□ 1.69
COL7A1-204ENST00000462475 PLA2R1Q13018 1463 aa25.62■■□□□ 1.69
COL7A1-204ENST00000462475 KIF3BO15066 747 aa25.62■■□□□ 1.69
COL7A1-204ENST00000462475 RSPH4AQ5TD94 716 aa25.61■■□□□ 1.69
COL7A1-204ENST00000462475 TCOF1Q13428 1488 aaKnown RBP25.6■■□□□ 1.69
COL7A1-204ENST00000462475 KDM5DQ9BY66 1539 aa25.59■■□□□ 1.69
COL7A1-204ENST00000462475 KANK4Q5T7N3 995 aaPredicted RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms