RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ARHGAP5Q13017 1502 aa18.85■□□□□ 0.61
VPS52-213ENST00000461743 MTUS2Q5JR59 1369 aa18.85■□□□□ 0.61
VPS52-213ENST00000461743 ZMYM4Q5VZL5 1548 aa18.84■□□□□ 0.61
VPS52-213ENST00000461743 AKNAQ7Z591 1439 aa18.83■□□□□ 0.61
VPS52-213ENST00000461743 ADGRL1O94910 1474 aa18.82■□□□□ 0.6
VPS52-213ENST00000461743 ABCC1P33527 1531 aa18.8■□□□□ 0.6
VPS52-213ENST00000461743 DENND4BO75064 1496 aaPredicted RBP18.8■□□□□ 0.6
VPS52-213ENST00000461743 ARHGEF40Q8TER5 1519 aa18.79■□□□□ 0.6
VPS52-213ENST00000461743 LRRC9Q6ZRR7 1453 aa18.79■□□□□ 0.6
VPS52-213ENST00000461743 POGZQ7Z3K3 1410 aa18.77■□□□□ 0.6
VPS52-213ENST00000461743 GPATCH8Q9UKJ3 1502 aaKnown RBP18.77■□□□□ 0.6
VPS52-213ENST00000461743 KDM5CP41229 1560 aa18.76■□□□□ 0.59
VPS52-213ENST00000461743 SAMD9LQ8IVG5 1584 aa18.76■□□□□ 0.59
VPS52-213ENST00000461743 EFCAB2Q5VUJ9 269 aa18.76■□□□□ 0.59
VPS52-213ENST00000461743 ZNF518AQ6AHZ1 1483 aa18.75■□□□□ 0.59
VPS52-213ENST00000461743 NCOA2Q15596 1464 aa18.74■□□□□ 0.59
VPS52-213ENST00000461743 MAGI2Q86UL8 1455 aa18.74■□□□□ 0.59
VPS52-213ENST00000461743 PLEKHH2Q8IVE3 1493 aa18.73■□□□□ 0.59
VPS52-213ENST00000461743 CCNB3Q8WWL7 1395 aa18.73■□□□□ 0.59
VPS52-213ENST00000461743 HECW2Q9P2P5 1572 aa18.72■□□□□ 0.59
VPS52-213ENST00000461743 SCAPERQ9BY12 1400 aa18.72■□□□□ 0.59
VPS52-213ENST00000461743 ZFYVE16Q7Z3T8 1539 aa18.7■□□□□ 0.58
VPS52-213ENST00000461743 SYCP2Q9BX26 1530 aa18.69■□□□□ 0.58
VPS52-213ENST00000461743 KIAA1107Q9UPP5 1409 aa18.66■□□□□ 0.58
VPS52-213ENST00000461743 APLP2Q06481 763 aa18.66■□□□□ 0.58
VPS52-213ENST00000461743 RAPGEF3O95398 923 aa18.65■□□□□ 0.58
VPS52-213ENST00000461743 ARHGEF12Q9NZN5 1544 aa18.64■□□□□ 0.58
VPS52-213ENST00000461743 REREQ9P2R6 1566 aa18.64■□□□□ 0.58
VPS52-213ENST00000461743 INO80Q9ULG1 1556 aaPredicted RBP18.64■□□□□ 0.57
VPS52-213ENST00000461743 KIDINS220Q9ULH0 1771 aa18.63■□□□□ 0.57
VPS52-213ENST00000461743 MLH3Q9UHC1 1453 aa18.63■□□□□ 0.57
VPS52-213ENST00000461743 ABCA6Q8N139 1617 aa18.63■□□□□ 0.57
VPS52-213ENST00000461743 CFDP1Q9UEE9 299 aaPredicted RBP18.62■□□□□ 0.57
VPS52-213ENST00000461743 CAMSAP2Q08AD1 1489 aa18.62■□□□□ 0.57
VPS52-213ENST00000461743 ARHGEF5Q12774 1597 aa18.62■□□□□ 0.57
VPS52-213ENST00000461743 DIP2CQ9Y2E4 1556 aa18.62■□□□□ 0.57
VPS52-213ENST00000461743 BCORL1Q5H9F3 1711 aa18.61■□□□□ 0.57
VPS52-213ENST00000461743 MYOM3Q5VTT5 1437 aa18.61■□□□□ 0.57
VPS52-213ENST00000461743 MIA2Q96PC5 1412 aa18.6■□□□□ 0.57
VPS52-213ENST00000461743 TRAPPC8Q9Y2L5 1435 aa18.59■□□□□ 0.57
VPS52-213ENST00000461743 ADGBQ8N7X0 1667 aa18.59■□□□□ 0.57
VPS52-213ENST00000461743 SIGLEC1Q9BZZ2 1709 aa18.58■□□□□ 0.57
VPS52-213ENST00000461743 KANK4Q5T7N3 995 aaPredicted RBP18.58■□□□□ 0.56
VPS52-213ENST00000461743 ATP7AQ04656 1500 aa18.58■□□□□ 0.56
VPS52-213ENST00000461743 C9orf84Q5VXU9 1444 aa18.57■□□□□ 0.56
VPS52-213ENST00000461743 YEATS2Q9ULM3 1422 aa18.57■□□□□ 0.56
VPS52-213ENST00000461743 ADAMTSL3P82987 1691 aa18.57■□□□□ 0.56
VPS52-213ENST00000461743 CROCC2H7BZ55 1655 aa18.57■□□□□ 0.56
VPS52-213ENST00000461743 ATP10AO60312 1499 aa18.56■□□□□ 0.56
VPS52-213ENST00000461743 CCDC141Q6ZP82 1450 aa18.56■□□□□ 0.56
VPS52-213ENST00000461743 MBD5Q9P267 1494 aa18.56■□□□□ 0.56
VPS52-213ENST00000461743 PTPN23Q9H3S7 1636 aa18.56■□□□□ 0.56
VPS52-213ENST00000461743 ZNF777Q9ULD5 760 aaPredicted RBP18.54■□□□□ 0.56
VPS52-213ENST00000461743 MAST1Q9Y2H9 1570 aa18.53■□□□□ 0.56
VPS52-213ENST00000461743 FER1L4A9Z1Z3 1794 aa18.53■□□□□ 0.56
VPS52-213ENST00000461743 PLXNC1O60486 1568 aa18.51■□□□□ 0.55
VPS52-213ENST00000461743 AGLP35573 1532 aa18.51■□□□□ 0.55
VPS52-213ENST00000461743 AFAP1Q8N556 730 aa18.51■□□□□ 0.55
VPS52-213ENST00000461743 TCOF1Q13428 1488 aaKnown RBP18.5■□□□□ 0.55
VPS52-213ENST00000461743 RTEL1-TNFRSF6BF6WH68 1400 aa18.49■□□□□ 0.55
VPS52-213ENST00000461743 FGD6Q6ZV73 1430 aa18.49■□□□□ 0.55
VPS52-213ENST00000461743 MADDQ8WXG6 1647 aa18.49■□□□□ 0.55
VPS52-213ENST00000461743 RSPH4AQ5TD94 716 aa18.49■□□□□ 0.55
VPS52-213ENST00000461743 DNMT1P26358 1616 aaKnown RBP18.49■□□□□ 0.55
VPS52-213ENST00000461743 SPAG9O60271 1321 aaKnown RBP18.48■□□□□ 0.55
VPS52-213ENST00000461743 SHANK2Q9UPX8 1470 aa18.47■□□□□ 0.55
VPS52-213ENST00000461743 KDM4FA0A1W2PPD8 638 aa18.46■□□□□ 0.55
VPS52-213ENST00000461743 HNRNPMP52272 730 aaKnown RBP eCLIP18.46■□□□□ 0.55
VPS52-213ENST00000461743 RIMS1Q86UR5 1692 aaKnown RBP18.46■□□□□ 0.55
VPS52-213ENST00000461743 ZNF644Q9H582 1327 aaPredicted RBP18.46■□□□□ 0.55
VPS52-213ENST00000461743 EIF2AK4Q9P2K8 1649 aaKnown RBP18.41■□□□□ 0.54
VPS52-213ENST00000461743 A2MP01023 1474 aa18.41■□□□□ 0.54
VPS52-213ENST00000461743 MYT1LQ9UL68 1186 aa18.41■□□□□ 0.54
VPS52-213ENST00000461743 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
VPS52-213ENST00000461743 MROH2AA6NES4 1674 aa18.4■□□□□ 0.54
VPS52-213ENST00000461743 AEBP2Q6ZN18 517 aaPredicted RBP18.39■□□□□ 0.53
VPS52-213ENST00000461743 FAM135AQ9P2D6 1515 aa18.39■□□□□ 0.53
VPS52-213ENST00000461743 DAPK1P53355 1430 aa18.37■□□□□ 0.53
VPS52-213ENST00000461743 PTPRMP28827 1452 aa18.37■□□□□ 0.53
VPS52-213ENST00000461743 RNF17Q9BXT8 1623 aaKnown RBP18.35■□□□□ 0.53
VPS52-213ENST00000461743 TSPY4P0CV99 314 aa18.34■□□□□ 0.53
VPS52-213ENST00000461743 TSPY10P0CW01 314 aa18.34■□□□□ 0.53
VPS52-213ENST00000461743 ABCC5O15440 1437 aa18.33■□□□□ 0.53
VPS52-213ENST00000461743 DUOX2Q9NRD8 1548 aa18.33■□□□□ 0.52
VPS52-213ENST00000461743 C3P01024 1663 aa18.32■□□□□ 0.52
VPS52-213ENST00000461743 ZC3H13Q5T200 1668 aaKnown RBP18.32■□□□□ 0.52
VPS52-213ENST00000461743 ADGRL2O95490 1459 aa18.32■□□□□ 0.52
VPS52-213ENST00000461743 CNTLNQ9NXG0 1405 aa18.32■□□□□ 0.52
VPS52-213ENST00000461743 DHX29Q7Z478 1369 aaKnown RBP18.31■□□□□ 0.52
VPS52-213ENST00000461743 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS52-213ENST00000461743 CLTCQ00610 1675 aaKnown RBP18.31■□□□□ 0.52
VPS52-213ENST00000461743 SETD1BQ9UPS6 1966 aaKnown RBP18.29■□□□□ 0.52
VPS52-213ENST00000461743 DEPDC5O75140 1603 aa18.28■□□□□ 0.52
VPS52-213ENST00000461743 ERBINQ96RT1 1412 aa18.28■□□□□ 0.52
VPS52-213ENST00000461743 PREX1Q8TCU6 1659 aa18.28■□□□□ 0.52
VPS52-213ENST00000461743 RRBP1Q9P2E9 1410 aaKnown RBP18.27■□□□□ 0.52
VPS52-213ENST00000461743 KDM5DQ9BY66 1539 aa18.26■□□□□ 0.51
VPS52-213ENST00000461743 KIF15Q9NS87 1388 aa18.25■□□□□ 0.51
VPS52-213ENST00000461743 PRDM15P57071 1507 aaPredicted RBP18.24■□□□□ 0.51
VPS52-213ENST00000461743 MROH1Q8NDA8 1641 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms