RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 HS6ST3Q8IZP7 471 aa7.13□□□□□ -1.27
VCL-203ENST00000461383 MARVELD3Q96A59 401 aa7.12□□□□□ -1.27
VCL-203ENST00000461383 EMP3P54852 163 aa7.11□□□□□ -1.27
VCL-203ENST00000461383 PHF8Q9UPP1 1060 aa7.1□□□□□ -1.27
VCL-203ENST00000461383 HOXB1P14653 301 aaPredicted RBP7.09□□□□□ -1.27
VCL-203ENST00000461383 DOK7Q18PE1 504 aa7.09□□□□□ -1.27
VCL-203ENST00000461383 TMEM92Q6UXU6 159 aa7.09□□□□□ -1.27
VCL-203ENST00000461383 FBXO22Q8NEZ5 403 aa7.09□□□□□ -1.27
VCL-203ENST00000461383 TSHZ2Q9NRE2 1034 aa7.09□□□□□ -1.27
VCL-203ENST00000461383 KDM2AQ9Y2K7 1162 aa7.09□□□□□ -1.27
VCL-203ENST00000461383 STK25O00506 426 aa7.08□□□□□ -1.28
VCL-203ENST00000461383 HS3ST6Q96QI5 342 aa7.08□□□□□ -1.28
VCL-203ENST00000461383 POTEB3A0JP26 581 aa7.07□□□□□ -1.28
VCL-203ENST00000461383 NLRP6P59044 892 aa7.07□□□□□ -1.28
VCL-203ENST00000461383 POTEBQ6S5H4 581 aa7.07□□□□□ -1.28
VCL-203ENST00000461383 SPNS2Q8IVW8 549 aa7.07□□□□□ -1.28
VCL-203ENST00000461383 BCL11BQ9C0K0 894 aaPredicted RBP7.07□□□□□ -1.28
VCL-203ENST00000461383 ZSWIM6Q9HCJ5 1215 aa7.07□□□□□ -1.28
VCL-203ENST00000461383 KRTAP3-3Q9BYR6 98 aa7.06□□□□□ -1.28
VCL-203ENST00000461383 KRTAP3-2Q9BYR7 98 aa7.06□□□□□ -1.28
VCL-203ENST00000461383 RIMBP2O15034 1052 aa7.04□□□□□ -1.28
VCL-203ENST00000461383 MMRN1Q13201 1228 aa7.04□□□□□ -1.28
VCL-203ENST00000461383 MFRPQ9BY79 579 aa7.04□□□□□ -1.28
VCL-203ENST00000461383 STK24Q9Y6E0 443 aa7.04□□□□□ -1.28
VCL-203ENST00000461383 FAM205CA6NFA0 338 aa7.03□□□□□ -1.28
VCL-203ENST00000461383 ZNF710Q8N1W2 664 aa7.03□□□□□ -1.28
VCL-203ENST00000461383 DNAJC5Q9H3Z4 198 aa7.03□□□□□ -1.28
VCL-203ENST00000461383 KIF3CO14782 793 aa7□□□□□ -1.29
VCL-203ENST00000461383 NKX1-1Q15270 411 aaPredicted RBP7□□□□□ -1.29
VCL-203ENST00000461383 GPR153Q6NV75 609 aa7□□□□□ -1.29
VCL-203ENST00000461383 RYDENQ9NUL5 291 aaKnown RBP7□□□□□ -1.29
VCL-203ENST00000461383 NBR1Q14596 966 aa6.99□□□□□ -1.29
VCL-203ENST00000461383 GTPBP6O43824 516 aaPredicted RBP6.97□□□□□ -1.29
VCL-203ENST00000461383 ERBB3P21860 1342 aa6.97□□□□□ -1.29
VCL-203ENST00000461383 PRKCSHP14314 528 aaPredicted RBP6.96□□□□□ -1.3
VCL-203ENST00000461383 SLC34A2O95436 690 aa6.94□□□□□ -1.3
VCL-203ENST00000461383 TPRNQ4KMQ1 711 aa6.94□□□□□ -1.3
VCL-203ENST00000461383 VARS2Q5ST30 1063 aaKnown RBP6.94□□□□□ -1.3
VCL-203ENST00000461383 ZNF687Q8N1G0 1237 aa6.94□□□□□ -1.3
VCL-203ENST00000461383 C2orf72A6NCS6 295 aa6.93□□□□□ -1.3
VCL-203ENST00000461383 ARSIQ5FYB1 569 aa6.9□□□□□ -1.3
VCL-203ENST00000461383 ZNF316A6NFI3 1004 aaPredicted RBP6.89□□□□□ -1.31
VCL-203ENST00000461383 PPP1R37O75864 691 aa6.88□□□□□ -1.31
VCL-203ENST00000461383 PTGER2P43116 358 aa6.87□□□□□ -1.31
VCL-203ENST00000461383 TMC2Q8TDI7 906 aa6.87□□□□□ -1.31
VCL-203ENST00000461383 KHSRPQ92945 711 aaKnown RBP eCLIP6.86□□□□□ -1.31
VCL-203ENST00000461383 WDR70Q9NW82 654 aa6.86□□□□□ -1.31
VCL-203ENST00000461383 PCDHGA4Q9Y5G9 962 aa6.86□□□□□ -1.31
VCL-203ENST00000461383 KDM4FA0A1W2PPD8 638 aa6.84□□□□□ -1.31
VCL-203ENST00000461383 PBX2P40425 430 aa6.84□□□□□ -1.31
VCL-203ENST00000461383 FOXK1P85037 733 aa6.84□□□□□ -1.31
VCL-203ENST00000461383 NUDT7P0C024 238 aa6.83□□□□□ -1.32
VCL-203ENST00000461383 P3H3Q8IVL6 736 aa6.83□□□□□ -1.32
VCL-203ENST00000461383 PTCD2Q8WV60 388 aaKnown RBP6.83□□□□□ -1.32
VCL-203ENST00000461383 RNF166Q96A37 237 aaPredicted RBP6.83□□□□□ -1.32
VCL-203ENST00000461383 MYT1LQ9UL68 1186 aa6.82□□□□□ -1.32
VCL-203ENST00000461383 LSM11P83369 360 aaKnown RBP eCLIP6.81□□□□□ -1.32
VCL-203ENST00000461383 GPHNQ9NQX3 736 aaPredicted RBP6.81□□□□□ -1.32
VCL-203ENST00000461383 LHX6Q9UPM6 363 aa6.81□□□□□ -1.32
VCL-203ENST00000461383 PSDA5PKW4 1024 aaPredicted RBP6.8□□□□□ -1.32
VCL-203ENST00000461383 POTEEQ6S8J3 1075 aa6.79□□□□□ -1.32
VCL-203ENST00000461383 PLPP6Q8IY26 295 aa6.77□□□□□ -1.33
VCL-203ENST00000461383 DSG2Q14126 1118 aa6.76□□□□□ -1.33
VCL-203ENST00000461383 CADPS2Q86UW7 1296 aa6.76□□□□□ -1.33
VCL-203ENST00000461383 CRISPLD2Q9H0B8 497 aa6.76□□□□□ -1.33
VCL-203ENST00000461383 ANKRD13DQ6ZTN6 518 aa6.74□□□□□ -1.33
VCL-203ENST00000461383 TULP1O00294 542 aaPredicted RBP6.73□□□□□ -1.33
VCL-203ENST00000461383 ARHGAP33O14559 1287 aa6.73□□□□□ -1.33
VCL-203ENST00000461383 KCNV2Q8TDN2 545 aa6.73□□□□□ -1.33
VCL-203ENST00000461383 OXER1Q8TDS5 423 aa6.73□□□□□ -1.33
VCL-203ENST00000461383 TK2O00142 265 aa6.72□□□□□ -1.33
VCL-203ENST00000461383 TBC1D12O60347 775 aa6.72□□□□□ -1.33
VCL-203ENST00000461383 PPP4R3BQ5MIZ7 849 aa6.7□□□□□ -1.34
VCL-203ENST00000461383 ADGRD1Q6QNK2 874 aa6.7□□□□□ -1.34
VCL-203ENST00000461383 AXIN2Q9Y2T1 843 aa6.7□□□□□ -1.34
VCL-203ENST00000461383 NCKAP5LQ9HCH0 1330 aa6.7□□□□□ -1.34
VCL-203ENST00000461383 HRO43593 1189 aa6.69□□□□□ -1.34
VCL-203ENST00000461383 PPP1R15BQ5SWA1 713 aa6.69□□□□□ -1.34
VCL-203ENST00000461383 E2F4Q16254 413 aa6.68□□□□□ -1.34
VCL-203ENST00000461383 PDE4AP27815 886 aa6.67□□□□□ -1.34
VCL-203ENST00000461383 MFSD10Q14728 455 aa6.67□□□□□ -1.34
VCL-203ENST00000461383 DMRTA1Q5VZB9 504 aa6.66□□□□□ -1.34
VCL-203ENST00000461383 ARHGEF1Q92888 912 aaKnown RBP6.66□□□□□ -1.34
VCL-203ENST00000461383 LARP6Q9BRS8 491 aaKnown RBP6.66□□□□□ -1.34
VCL-203ENST00000461383 PSEN2P49810 448 aa6.65□□□□□ -1.34
VCL-203ENST00000461383 LMOD2Q6P5Q4 547 aa6.65□□□□□ -1.34
VCL-203ENST00000461383 SLC4A5Q9BY07 1137 aa6.65□□□□□ -1.34
VCL-203ENST00000461383 ANO8Q9HCE9 1232 aaPredicted RBP6.65□□□□□ -1.34
VCL-203ENST00000461383 FOSBP53539 338 aa6.64□□□□□ -1.35
VCL-203ENST00000461383 BCL2L12Q9HB09 334 aa6.64□□□□□ -1.35
VCL-203ENST00000461383 UPF1Q92900 1129 aaKnown RBP eCLIP6.63□□□□□ -1.35
VCL-203ENST00000461383 JPH4Q96JJ6 628 aa6.63□□□□□ -1.35
VCL-203ENST00000461383 HCSTQ9UBK5 93 aa6.63□□□□□ -1.35
VCL-203ENST00000461383 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.62□□□□□ -1.35
VCL-203ENST00000461383 DDX27Q96GQ7 796 aaKnown RBP6.62□□□□□ -1.35
VCL-203ENST00000461383 KCNH8Q96L42 1107 aa6.61□□□□□ -1.35
VCL-203ENST00000461383 ZNF454Q8N9F8 522 aa6.6□□□□□ -1.35
VCL-203ENST00000461383 KCNK17Q96T54 332 aa6.6□□□□□ -1.35
VCL-203ENST00000461383 VPS9D1Q9Y2B5 631 aa6.6□□□□□ -1.35
VCL-203ENST00000461383 EVI5O60447 810 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms